prot_P-littoralis_Contig106.114.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig106.114.1
Unique Nameprot_P-littoralis_Contig106.114.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length86
Homology
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 6.350e-52
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEMDADGTKRKIQLDQILLNGNNVAMLVPGGSPED 84
            MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYE+DADGTKR+IQLDQILLNGNNVAMLVPGGSPED
Sbjct:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQILLNGNNVAMLVPGGSPED 84          
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 147 bits (372), Expect = 9.160e-45
Identity = 69/83 (83.13%), Postives = 81/83 (97.59%), Query Frame = 0
Query:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEMDADGTKRKIQLDQILLNGNNVAMLVPGGSPE 83
            MA RL+PLELIDKCIGS+LWIIMKGDKELVGTLRGFDDYVNMVL+DVTEYE+DA+G +R+++L+QILLNGNNVA+LVPGGSP+
Sbjct:    1 MAGRLMPLELIDKCIGSKLWIIMKGDKELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQILLNGNNVALLVPGGSPD 83          
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 138 bits (347), Expect = 6.910e-41
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 0
Query:    4 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEMDADGTKRKIQLDQILLNGNNVAMLVPGGSPE 83
            RLLPLELIDKCIGSR+WIIMKGDKE VGTLRGFDDYVNMVLDDVTEYE+  +G KRK+ +DQ+LLNGNNV +LVPGGSPE
Sbjct:    5 RLLPLELIDKCIGSRMWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQVLLNGNNVCLLVPGGSPE 83          
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Match: A0A024UWN5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 5.520e-40
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 0
Query:    4 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEMDADGTKRKIQLDQILLNGNNVAMLVPGGSPED 84
            RLLPLELIDKCIGSR+WIIMKGDKE VGTLRGFDDYVNMVLDDV EYE+  +G KRK+++DQ+LLNGNNV +LVPGG+PE+
Sbjct:    6 RLLPLELIDKCIGSRIWIIMKGDKEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQVLLNGNNVCLLVPGGNPEE 85          
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Match: A0A024G4D3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4D3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.060e-39
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0
Query:    4 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEMDADGTKRKIQLDQILLNGNNVAMLVPGGSPEDA 85
            R+LPLELIDKCIGSRLWI+M+GDKE VGTLRGFDDYVNMVLDDVTE+E+   G KR+ +LDQ+LLNGNNV ML+PGG PED+
Sbjct:    5 RVLPLELIDKCIGSRLWIVMQGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSG-KRQTELDQVLLNGNNVCMLIPGGMPEDS 85          
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 134 bits (336), Expect = 2.930e-39
Identity = 65/80 (81.25%), Postives = 74/80 (92.50%), Query Frame = 0
Query:    3 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEMDADGTKRKIQLDQILLNGNNVAMLVPGGSP 82
            +RLLPLELIDKCIGSRLWIIMKGDKE +GTLRGFDDYVNMVLDDVTEYE+  +G KR+I+LDQ+LLNGNN+ +LVPGG P
Sbjct:    4 SRLLPLELIDKCIGSRLWIIMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQVLLNGNNICLLVPGGFP 82          
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Match: A0A8K1CS49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS49_PYTOL)

HSP 1 Score: 133 bits (335), Expect = 4.160e-39
Identity = 64/84 (76.19%), Postives = 76/84 (90.48%), Query Frame = 0
Query:    2 AARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEMDADGTKRKIQLDQILLNGNNVAMLVPGGSPEDA 85
            A RLLPLELIDKCIGS++WIIMKGDKE VGTLRGFDDYVNMVLDDVTE+E+  +G K++++L+Q+LLNGNNV +LVPGG P DA
Sbjct:    3 AGRLLPLELIDKCIGSQIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEFEITPEG-KKEVKLEQVLLNGNNVCLLVPGGFPSDA 85          
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA)

HSP 1 Score: 133 bits (335), Expect = 6.890e-39
Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 0
Query:    3 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEMDADGTKRKIQLDQILLNGNNVAMLVPGGSPEDA 85
            +++LPLELIDKCIGS++W+IM+GDKE+VGTLRGFDDYVNMVL+DVTEYE+ ADG KR  +LDQILLNGNNVA+LVPGG P  A
Sbjct:   21 SQVLPLELIDKCIGSKMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQILLNGNNVALLVPGGDPSQA 102          
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Match: A0A7S3BG05_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BG05_9EUKA)

HSP 1 Score: 133 bits (334), Expect = 8.950e-39
Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 0
Query:    3 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEMDADGTKRKIQLDQILLNGNNVAMLVPGGSPEDA 85
            A++LPLE+IDKCIGSR+W+IM+GDKE+VGTLRGFDDYVNMVL+DVTEYE+ A+G KR  +LDQILLNGNNVA+LVPGG P  A
Sbjct:   18 AQVLPLEIIDKCIGSRMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITAEG-KRVTKLDQILLNGNNVALLVPGGDPSQA 99          
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Match: A0A7S2SPY3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPY3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.790e-38
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 0
Query:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEMDADGTKRKIQLDQILLNGNNVAMLVPGGSPE 83
            M+ + LPL +IDKCIGSRLW+IMKGDKELVGTLRGFDDYVNMVLDDVTEYE+  +G KR  +L+QILLNGNN+A+LVPGG PE
Sbjct:   24 MSGKKLPLAIIDKCIGSRLWVIMKGDKELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRATRLEQILLNGNNIALLVPGGDPE 105          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig106.114.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI3_ECTSI6.350e-5297.62U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=E... [more]
A0A835ZDD9_9STRA9.160e-4583.13U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A067CXC5_SAPPC6.910e-4183.75U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=S... [more]
A0A024UWN5_9STRA5.520e-4080.25U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=A... [more]
A0A024G4D3_9STRA2.060e-3978.05U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=A... [more]
K3W4W8_GLOUD2.930e-3981.25U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=... [more]
A0A8K1CS49_PYTOL4.160e-3976.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4M2I3_9EUKA6.890e-3977.11U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A7S3BG05_9EUKA8.950e-3977.11U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=H... [more]
A0A7S2SPY3_9STRA3.790e-3877.11U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..78
e-value: 1.9E-23
score: 93.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..78
e-value: 6.1E-22
score: 77.1
NoneNo IPR availableGENE3D2.30.30.100coord: 6..83
e-value: 5.5E-28
score: 98.5
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 3..82
IPR033871Sm-like protein LSm5CDDcd01732LSm5coord: 5..80
e-value: 1.54467E-47
score: 143.539
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig106contigP-littoralis_Contig106:458578..462463 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig106.114.1mRNA_P-littoralis_Contig106.114.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig106 458451..463389 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig106.114.1 ID=prot_P-littoralis_Contig106.114.1|Name=mRNA_P-littoralis_Contig106.114.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEY
EMDADGTKRKIQLDQILLNGNNVAMLVPGGSPEDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR033871LSm5
IPR010920LSM_dom_sf