mRNA_P-littoralis_Contig999.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig999.6.1
Unique NamemRNA_P-littoralis_Contig999.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5K9G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G2_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.020e-29
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 3
Query:    6 MPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNLPRATVAEPSAP 293
            MP+RD    GWG++PKAKG  A  LTG NCV+W+SEHSYIG D K  T+TCGCNP       CR C C+GRKCSLA     RC+L R  V  P AP
Sbjct:  308 MPERDFNGKGWGINPKAKGSNASALTGENCVMWMSEHSYIGPDGKLVTMTCGCNPVKALKHNCRGCGCKGRKCSLACGCRGRCHLARKPV--PGAP 401          
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5KN69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN69_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.100e-29
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 3
Query:    6 MPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNLPRATVAEPSAP 293
            MP+RD    GW ++PKAKG  A  LTG NCV+W+SEHSYIG D K  T+TCGC+P       CR C C+GRKCSLA     RC+L R  V  P AP
Sbjct:   23 MPERDFNGKGWIINPKAKGSNASALTGENCVMWMSEHSYIGPDGKMVTMTCGCDPVKALKHNCRGCGCKGRKCSLACGCRGRCHLARKPV--PGAP 116          
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5KNV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.870e-27
Identity = 55/105 (52.38%), Postives = 63/105 (60.00%), Query Frame = 3
Query:    6 MPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXX---------RCNLPRATVAEPSAP 293
            MP+RD    GWG++PKAKG  A  LTG NCV+W+SEHSYIG D K  T+TCGCNP       CR C C+GRKCSLA              RC+L R  V  P AP
Sbjct:  269 MPERDFNGKGWGINPKAKGSNASALTGENCVMWMSEHSYIGPDGKLVTMTCGCNPVKALKHNCRGCGCKGRKCSLARKGRECSLACGCRGRCHLARKPV--PGAP 371          
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5KR74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR74_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.170e-27
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 3
Query:    6 MPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLA 233
            MP+RD    GWG++PKAKG  A  LTG NCV+W+SEHSYIG D K  T+TCGC+P       CR C C+GRKCSLA
Sbjct:  219 MPERDFNGKGWGINPKAKGSNASALTGENCVMWMSEHSYIGPDGKMVTMTCGCDPVKALKHNCRGCGCKGRKCSLA 294          
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5JJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH5_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.660e-26
Identity = 50/92 (54.35%), Postives = 59/92 (64.13%), Query Frame = 3
Query:    3 TMPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNLPRATVA 278
             MP  +    GWGVDP+ KG +++EL   NCVLWLSE+SYIG +RKT TL CGCNPD     +C  C C+ RKCSLA     RC L RA  A
Sbjct:  434 AMPTTEFAYEGWGVDPRGKGSDSDELIAENCVLWLSEYSYIGPNRKTVTLACGCNPDTA---LCNRCRCKDRKCSLACGRISRCTLRRAAPA 522          
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5K0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U7_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.010e-23
Identity = 47/86 (54.65%), Postives = 55/86 (63.95%), Query Frame = 3
Query:    3 TMPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNL 260
            TMP  +    GWGVDP+ KG   +ELT  NCVL LSE+SYIG DRKT TL CGCNP++    +C  C C+ RKCSLA      C L
Sbjct:  337 TMPATEFAGKGWGVDPRGKGSNGDELTAGNCVLRLSEYSYIGPDRKTVTLACGCNPEM---YLCNRCRCKDRKCSLACGCRGLCTL 419          
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5JVZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 7.470e-21
Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = 3
Query:    3 TMPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTC-GCNPDLPPHRM-CRSCSCRG--RKCSLAXXXXXRCNLPRATVAEPSAPAPGP 305
            T+P RD K+ GWGVDP  K   + ELT  NCV+WLSEHSY+G+D KTKTL C  C P      + C+ C C    RKCSL       CN  R   A+P+ P+P P
Sbjct:  508 TVPPRDFKDQGWGVDPTLKNFASLELTKENCVMWLSEHSYVGSDNKTKTLACKDCRPPTIGRPINCQRCRCNKDERKCSLTCGCRGTCNERR--FAKPATPSPAP 610          
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5JT11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT11_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.070e-18
Identity = 46/86 (53.49%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    3 TMPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNL 260
             MP  +    GW VDP+ K ++  ELT  NCVL LSE SYIG DRKT TL CGCNP+     +C  C  + RKCSL XXX  RC L
Sbjct:  829 AMPATEFAGKGWSVDPQGKRNDGVELTVKNCVLDLSEFSYIGPDRKTITLACGCNPETT---LCNRCRWKDRKCSLXXXXRGRCTL 911          
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5JT24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT24_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.400e-17
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 3
Query:    3 TMPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPD 173
            TMP  +    GWGV+ + KG +++ELT  NCVLWLSE+SYIG DRKT TL  GCNPD
Sbjct:  553 TMPTTEFAGKGWGVEIRGKGSDSDELTAENCVLWLSEYSYIGPDRKTVTLAFGCNPD 609          
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5JLL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.060e-16
Identity = 39/69 (56.52%), Postives = 45/69 (65.22%), Query Frame = 3
Query:   72 EELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNLPRATVA 278
            E+++  NCVLWLSE+SYIG DRKT TL  GCNPD     +C  C C+ RKCSLA     RC L RA  A
Sbjct:  225 EKISAENCVLWLSEYSYIGPDRKTVTLAFGCNPDTA---LCNRCRCKDRKCSLACRCRSRCTLRRAASA 290          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K9G2_9PHAE1.020e-2957.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN69_9PHAE1.100e-2955.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNV6_9PHAE3.870e-2752.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR74_9PHAE5.170e-2760.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJH5_9PHAE4.660e-2654.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0U7_9PHAE1.010e-2354.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVZ4_9PHAE7.470e-2148.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT11_9PHAE2.070e-1853.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT24_9PHAE8.400e-1761.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLL0_9PHAE4.060e-1656.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig999contigP-littoralis_Contig999:18058..18377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size321
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791920.9783123-UTR-P-littoralis_Contig999:18057..180621680791920.9783123-UTR-P-littoralis_Contig999:18057..18062Pylaiella littoralis U1_48UTRP-littoralis_Contig999 18058..18062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791920.9923654-CDS-P-littoralis_Contig999:18062..183771680791920.9923654-CDS-P-littoralis_Contig999:18062..18377Pylaiella littoralis U1_48CDSP-littoralis_Contig999 18063..18377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig999.6.1prot_P-littoralis_Contig999.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig999 18063..18377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig999.6.1

>prot_P-littoralis_Contig999.6.1 ID=prot_P-littoralis_Contig999.6.1|Name=mRNA_P-littoralis_Contig999.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLT
CGCNPDLPPHRMCRSCSCRGRKCSLACSCRGRCNLPRATVAEPSAPAPGP
TNGAP
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mRNA from alignment at P-littoralis_Contig999:18058..18377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig999.6.1 ID=mRNA_P-littoralis_Contig999.6.1|Name=mRNA_P-littoralis_Contig999.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=320bp|location=Sequence derived from alignment at P-littoralis_Contig999:18058..18377+ (Pylaiella littoralis U1_48)
AGACGATGCCAAAAAGAGACTTAAAAAACCACGGGTGGGGTGTCGACCCG AAAGCTAAGGGGCACGAGGCGGAAGAACTAACAGGGAGCAACTGCGTATT GTGGTTGTCGGAGCATTCGTACATCGGTACTGACAGGAAGACAAAAACGC TTACATGCGGTTGCAACCCGGACCTGCCCCCCCACCGCATGTGCAGATCG TGCAGCTGCAGAGGGAGGAAATGCTCGCTCGCCTGCAGCTGCAGGGGTCG GTGCAACCTACCCCGTGCGACCGTGGCCGAACCTAGTGCGCCTGCGCCCG GGCCGACGAACGGTGCGCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig999:18058..18377+

>mRNA_P-littoralis_Contig999.6.1 ID=mRNA_P-littoralis_Contig999.6.1|Name=mRNA_P-littoralis_Contig999.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig999:18058..18377+ (Pylaiella littoralis U1_48)
ATGCCAAAAAGAGACTTAAAAAACCACGGGTGGGGTGTCGACCCGAAAGC
TAAGGGGCACGAGGCGGAAGAACTAACAGGGAGCAACTGCGTATTGTGGT
TGTCGGAGCATTCGTACATCGGTACTGACAGGAAGACAAAAACGCTTACA
TGCGGTTGCAACCCGGACCTGCCCCCCCACCGCATGTGCAGATCGTGCAG
CTGCAGAGGGAGGAAATGCTCGCTCGCCTGCAGCTGCAGGGGTCGGTGCA
ACCTACCCCGTGCGACCGTGGCCGAACCTAGTGCGCCTGCGCCCGGGCCG
ACGAACGGTGCGCCT
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