mRNA_P-littoralis_Contig999.6.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5K9G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G2_9PHAE) HSP 1 Score: 120 bits (301), Expect = 1.020e-29 Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = 3
Query: 6 MPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNLPRATVAEPSAP 293
MP+RD GWG++PKAKG A LTG NCV+W+SEHSYIG D K T+TCGCNP CR C C+GRKCSLA RC+L R V P AP
Sbjct: 308 MPERDFNGKGWGINPKAKGSNASALTGENCVMWMSEHSYIGPDGKLVTMTCGCNPVKALKHNCRGCGCKGRKCSLACGCRGRCHLARKPV--PGAP 401
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5KN69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN69_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.100e-29 Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 3
Query: 6 MPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNLPRATVAEPSAP 293
MP+RD GW ++PKAKG A LTG NCV+W+SEHSYIG D K T+TCGC+P CR C C+GRKCSLA RC+L R V P AP
Sbjct: 23 MPERDFNGKGWIINPKAKGSNASALTGENCVMWMSEHSYIGPDGKMVTMTCGCDPVKALKHNCRGCGCKGRKCSLACGCRGRCHLARKPV--PGAP 116
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5KNV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV6_9PHAE) HSP 1 Score: 112 bits (281), Expect = 3.870e-27 Identity = 55/105 (52.38%), Postives = 63/105 (60.00%), Query Frame = 3
Query: 6 MPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXX---------RCNLPRATVAEPSAP 293
MP+RD GWG++PKAKG A LTG NCV+W+SEHSYIG D K T+TCGCNP CR C C+GRKCSLA RC+L R V P AP
Sbjct: 269 MPERDFNGKGWGINPKAKGSNASALTGENCVMWMSEHSYIGPDGKLVTMTCGCNPVKALKHNCRGCGCKGRKCSLARKGRECSLACGCRGRCHLARKPV--PGAP 371
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5KR74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR74_9PHAE) HSP 1 Score: 110 bits (275), Expect = 5.170e-27 Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 3
Query: 6 MPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLA 233
MP+RD GWG++PKAKG A LTG NCV+W+SEHSYIG D K T+TCGC+P CR C C+GRKCSLA
Sbjct: 219 MPERDFNGKGWGINPKAKGSNASALTGENCVMWMSEHSYIGPDGKMVTMTCGCDPVKALKHNCRGCGCKGRKCSLA 294
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5JJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH5_9PHAE) HSP 1 Score: 110 bits (275), Expect = 4.660e-26 Identity = 50/92 (54.35%), Postives = 59/92 (64.13%), Query Frame = 3
Query: 3 TMPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNLPRATVA 278
MP + GWGVDP+ KG +++EL NCVLWLSE+SYIG +RKT TL CGCNPD +C C C+ RKCSLA RC L RA A
Sbjct: 434 AMPTTEFAYEGWGVDPRGKGSDSDELIAENCVLWLSEYSYIGPNRKTVTLACGCNPDTA---LCNRCRCKDRKCSLACGRISRCTLRRAAPA 522
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5K0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U7_9PHAE) HSP 1 Score: 103 bits (258), Expect = 1.010e-23 Identity = 47/86 (54.65%), Postives = 55/86 (63.95%), Query Frame = 3
Query: 3 TMPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNL 260
TMP + GWGVDP+ KG +ELT NCVL LSE+SYIG DRKT TL CGCNP++ +C C C+ RKCSLA C L
Sbjct: 337 TMPATEFAGKGWGVDPRGKGSNGDELTAGNCVLRLSEYSYIGPDRKTVTLACGCNPEM---YLCNRCRCKDRKCSLACGCRGLCTL 419
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5JVZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ4_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 7.470e-21 Identity = 51/105 (48.57%), Postives = 62/105 (59.05%), Query Frame = 3
Query: 3 TMPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTC-GCNPDLPPHRM-CRSCSCRG--RKCSLAXXXXXRCNLPRATVAEPSAPAPGP 305
T+P RD K+ GWGVDP K + ELT NCV+WLSEHSY+G+D KTKTL C C P + C+ C C RKCSL CN R A+P+ P+P P
Sbjct: 508 TVPPRDFKDQGWGVDPTLKNFASLELTKENCVMWLSEHSYVGSDNKTKTLACKDCRPPTIGRPINCQRCRCNKDERKCSLTCGCRGTCNERR--FAKPATPSPAP 610
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5JT11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT11_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.070e-18 Identity = 46/86 (53.49%), Postives = 53/86 (61.63%), Query Frame = 3
Query: 3 TMPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNL 260
MP + GW VDP+ K ++ ELT NCVL LSE SYIG DRKT TL CGCNP+ +C C + RKCSL XXX RC L
Sbjct: 829 AMPATEFAGKGWSVDPQGKRNDGVELTVKNCVLDLSEFSYIGPDRKTITLACGCNPETT---LCNRCRWKDRKCSLXXXXRGRCTL 911
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5JT24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT24_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 8.400e-17 Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 3
Query: 3 TMPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPD 173
TMP + GWGV+ + KG +++ELT NCVLWLSE+SYIG DRKT TL GCNPD
Sbjct: 553 TMPTTEFAGKGWGVEIRGKGSDSDELTAENCVLWLSEYSYIGPDRKTVTLAFGCNPD 609
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Match: A0A6H5JLL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL0_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 4.060e-16 Identity = 39/69 (56.52%), Postives = 45/69 (65.22%), Query Frame = 3
Query: 72 EELTGSNCVLWLSEHSYIGTDRKTKTLTCGCNPDLPPHRMCRSCSCRGRKCSLAXXXXXRCNLPRATVA 278
E+++ NCVLWLSE+SYIG DRKT TL GCNPD +C C C+ RKCSLA RC L RA A
Sbjct: 225 EKISAENCVLWLSEYSYIGPDRKTVTLAFGCNPDTA---LCNRCRCKDRKCSLACRCRSRCTLRRAASA 290 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig999.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig999.6.1 >prot_P-littoralis_Contig999.6.1 ID=prot_P-littoralis_Contig999.6.1|Name=mRNA_P-littoralis_Contig999.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp MPKRDLKNHGWGVDPKAKGHEAEELTGSNCVLWLSEHSYIGTDRKTKTLTback to top mRNA from alignment at P-littoralis_Contig999:18058..18377+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig999.6.1 ID=mRNA_P-littoralis_Contig999.6.1|Name=mRNA_P-littoralis_Contig999.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=320bp|location=Sequence derived from alignment at P-littoralis_Contig999:18058..18377+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig999:18058..18377+ >mRNA_P-littoralis_Contig999.6.1 ID=mRNA_P-littoralis_Contig999.6.1|Name=mRNA_P-littoralis_Contig999.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig999:18058..18377+ (Pylaiella littoralis U1_48)back to top |