mRNA_P-littoralis_Contig997.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig997.3.1
Unique NamemRNA_P-littoralis_Contig997.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig997.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig997contigP-littoralis_Contig997:8137..11036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size469
Hectar predicted targeting categoryother localisation
Exons2
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791920.1420705-CDS-P-littoralis_Contig997:8136..82831680791920.1420705-CDS-P-littoralis_Contig997:8136..8283Pylaiella littoralis U1_48CDSP-littoralis_Contig997 8137..8283 +
1680791920.1560543-CDS-P-littoralis_Contig997:10716..110341680791920.1560543-CDS-P-littoralis_Contig997:10716..11034Pylaiella littoralis U1_48CDSP-littoralis_Contig997 10717..11034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig997.3.1prot_P-littoralis_Contig997.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig997 8137..11034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig997.3.1

>prot_P-littoralis_Contig997.3.1 ID=prot_P-littoralis_Contig997.3.1|Name=mRNA_P-littoralis_Contig997.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
PGDDQEDEVVTTRVVAPTQAQRALAVDGIQRAENQKLVGLIQDSHISREL
RLKLDGVLDVMRDADGRYTWFTMRTHLDVAIRMATDLNLLDARKVLSDTV
ARGNRMVAACNDPVLVLGVFSKMLPSVHGVSQEVYEADCADLRKVTALSR
NFFTN
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mRNA from alignment at P-littoralis_Contig997:8137..11036+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig997.3.1 ID=mRNA_P-littoralis_Contig997.3.1|Name=mRNA_P-littoralis_Contig997.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2900bp|location=Sequence derived from alignment at P-littoralis_Contig997:8137..11036+ (Pylaiella littoralis U1_48)
CCAGGGGACGACCAGGAGGACGAGGTGGTCACGACCAGGGTAGTAGCGCC
TACCCAGGCGCAGCGGGCTTTGGCGGTGGACGGCATCCAACGCGCGGAGA
ACCAAAAGCTAGTGGGCTTGATCCAGGACTCCCACATATCTCGCGAGGTG
AATTTCGGGTGCTTGCATTTTATCTCCATCCACCGCTGCGCATTTGTTCG
GGCCTCCGCCTTTGAATCTATCGGGGTATAATAGGTTCCATATATTCTCT
GTCACCTTCTTCTTTCCATCGTTCTCGGATGCCAGCAATATTTTGGTTCG
GAGTAATACGGTACTGGAAAAGAGGGATCGGTTTCTGTGCTCTTATCATA
AATGCTGTTTCACCGACTGCCTGTACAGTACGGCAGTACCGGCTACACCG
CCGTGCTTATATTGATATGGTACGTTACTGCCATGGGCAGTTGCGTCGTA
TACTCCAGAACTGCTGTTACTGATATCAGGGGTGGATTCGTACACTCAAA
TTGGGTATTGAGTATGCTACTGCGATACTGCTGTAGACCGAGCCGCCATA
CGATTGTACAAACGTCCCTGCCTGCTGTAACCACGCGGCGGTACCGGGTC
GGTCCGCATTGCGTATCAGACGACCCGCTATTGACGAATACCTGGTAGTG
ATGATGCGTGCTATTTACGACCGACCGGGTTCGATCCCCTTAAACACCTG
AGTAGACGGCGGGGTTCGATTCCATCACTCACGGAAGGACGCTTTATTCT
ACTTCATTTTACTTTCGGTTCTATGATACCTGAAATGCTGTGATGTACGA
TACCGACATTAGGATTACTCCGGAACCGGGTAATGAGTAGGCTGCTGCTG
TACCCAGAAACCCTGACGACTACTGTTGACACTTCATTTTATTTTGTTCC
ACCTCACTGTGTACGATACCGCTGATGATACTCGATCCTTATTTTCCGTT
CTACCTCATTCTCTACGATACGGACATCAGTGGTTGATTGCTTCGTATGC
TCCGGAACCGGAAATGAGTAGGTAGGCTACGGCCGTACACACACACCATA
ACCATGCTGCGGTAGACCGAGCCGCAATACCGTACAACCGCCCAGGCCCG
CGGTAACCAGGCCGCGGTACCGGGAACCACCGTAGGGAGTGTATTAGGTT
CCGCTATGGACCTAAAATTATTACATGTACGTCTGGGTTCGATCCCCTAC
ACCTTTAAAAATTACGGCAGGGGGGGGGCTCGATGCCCCAATTTACGGAG
GACACTTTAGGTGTAACTTTTATTTTTCTCTATATTTCTATTTTGACGAA
TATGTTCGAACGGGTTCGATCCCCTAATTTACGGACGGGCCCGATCCCTA
CTACACGATTTGGGTTCGATCCCCTCGGGCACGAATTACTTCGACCCCCT
ACGAACAGGTTCGATCTCCGCCACGCAATTGGGTTCGATCCCCTCGGATA
CGAACGGGTTCGACCCCCCCTCATTCTCGGACAGGTTCGATCCCCACTAC
GCAATTGGGTTCGATCCCCTCGGATACGAACGGGTTCGACCCCCTGGTTT
AGTTCGGTCCTAATTTTTGGACAGGCTCGACCCCCAATACGCAATTGGGT
TCGAACCCCTCATATCCAACAGGTTCGACCCCCCCGGTTTTCGGACGGGT
TCGATCCCCACTACGCAATCGGGTTCGATCCCCTCATATACTTTTACGGA
TGGGTCCGATCCCCACTACGCCATCGGGTTCGATCCCCTCATATACTTTT
ACGGACGGGTTCGATCCCCACTACGCAATCGGGTTCGATCCCCTCATATA
CTCTTACGGACGGGTTCGATCCCCACTACGCAATCGGGTTCGATCCCCCC
ATATAATTTTACGGCATATACTCTTACGGACGGGTTCGATCCCCACTACG
CAATCGGGTTCGATCCCCTCATATACGGACGGGTTCGATTACGCAATCGG
GTTCGATCCCCACTAGTTTTCGGACGGGTTCGATCCCCACTGCGTAATCG
GGTTCGATCATTTCTTACTACTGTCCGAACGGGTTCGATCCCTTTGCGGT
ACGGTTGGGTTCGATCCCCTCATACACCTTTACGGACGGATTCGATCCCC
ACTTAAAGCGTGGGTTCGATCCCTTACTGCTGTACGAACGGGTTCGATCC
CTTGCGGTACGATTGGGTTCGATCCCCTGTGTGGCACGGTTCGACCCCGT
AGGACTTTTGCCGGAAAATCAGGAATGTTATCTTGGCTTTGGTCTTTCCG
ATCCCCGGGGGGCTCTGCAGGAAAAATCAGGAACCGTGTTTATTTTATTC
TCTTTTATTTTTCTTTCGCGGCTGTGGTACGGTTAGATCCCCTTGCGAGT
TTCTGCGCGAAGTTCCCCGAGCGCGCCATGCGACGTGGGGCTCTGCAGGA
AAAATCAGAAATCTTGTTTTATCTTATTCCATTTCACTCTTTCGCGGCGG
CGGTAAGGTTCGATCCCCTTGCGAGTTTCTGCGTGAAGTTCCCCGAGCGC
GCCATAAGGCAAACGAGTTTCATATTGACGTGGCCGACCGATTCCTTTGC
TTTCACTTCCGACGGTGCGATCGATTGCAGTTGCGACTCAAGCTCGACGG
CGTTCTCGACGTCATGCGCGACGCGGACGGTCGCTATACGTGGTTCACCA
TGCGCACTCACCTGGACGTAGCCATTCGGATGGCAACGGATTTGAACCTC
CTCGACGCGAGGAAGGTGCTGAGCGACACAGTCGCGCGGGGCAATCGTAT
GGTGGCGGCGTGTAACGATCCGGTTCTCGTCCTTGGCGTCTTCTCCAAGA
TGCTGCCGTCGGTCCACGGCGTCTCGCAAGAGGTATACGAGGCGGACTGC
GCGGACCTGCGGAAGGTCACCGCGCTTTCCCGCAACTTCTTCACCAACCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig997:8137..11036+

>mRNA_P-littoralis_Contig997.3.1 ID=mRNA_P-littoralis_Contig997.3.1|Name=mRNA_P-littoralis_Contig997.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig997:8137..11036+ (Pylaiella littoralis U1_48)
CCAGGGGACGACCAGGAGGACGAGGTGGTCACGACCAGGGTAGTAGCGCC
TACCCAGGCGCAGCGGGCTTTGGCGGTGGACGGCATCCAACGCGCGGAGA
ACCAAAAGCTAGTGGGCTTGATCCAGGACTCCCACATATCTCGCGAGTTG
CGACTCAAGCTCGACGGCGTTCTCGACGTCATGCGCGACGCGGACGGTCG
CTATACGTGGTTCACCATGCGCACTCACCTGGACGTAGCCATTCGGATGG
CAACGGATTTGAACCTCCTCGACGCGAGGAAGGTGCTGAGCGACACAGTC
GCGCGGGGCAATCGTATGGTGGCGGCGTGTAACGATCCGGTTCTCGTCCT
TGGCGTCTTCTCCAAGATGCTGCCGTCGGTCCACGGCGTCTCGCAAGAGG
TATACGAGGCGGACTGCGCGGACCTGCGGAAGGTCACCGCGCTTTCCCGC
AACTTCTTCACCAAC
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