mRNA_P-littoralis_Contig995.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig995.5.1
Unique Name	mRNA_P-littoralis_Contig995.5.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 8.550e-63
Identity = 98/159 (61.64%), Postives = 112/159 (70.44%), Query Frame = 2

Query:    5 EMKDGKLVEGRSDTYVGRCPPCQEYPDGLMRKSVR*AVEILENLLPDLEIDCKGGGPEYNRQRSARVILRVGVNFDGYWTCDDLCKQLKPLFVVFELSREPGRQMLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHEGRRIPTVFEEDSVL 481
            E+ D      RSDTYVGRC PC+EYPDG+  K V  AV  LE +L +L IDCK  GPEYN  RSAR+ILRVG N DGYW  + LC QL+ +F  FE+SREPGRQML +FDNSTGH AYSPDALRAQN+ A  GG+Q  PR F + GR I T F E  VL
Sbjct:   72 EITDEGATLSRSDTYVGRCKPCEEYPDGMKTKKVSDAVHSLERVLSELNIDCKESGPEYNLARSARIILRVGKNLDGYWDSNRLCVQLEAIFAAFEISREPGRQMLAVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEYNGRTIYTTFREGDVL 230

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BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 2.430e-62
Identity = 99/160 (61.88%), Postives = 113/160 (70.62%), Query Frame = 2

Query:    2 MEMKDGKLVEGRSDTYVGRCPPCQEYPDGLMRKSVR*AVEILENLLPDLEIDCKGGGPEYNRQRSARVILRVGVNFDGYWTCDDLCKQLKPLFVVFELSREPGRQMLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHEGRRIPTVFEEDSVL 481
            ME+ D      RSDTYVGRC PC+EYPDG+  K V  AV  LE +L +L IDCK  GPEYN  RSAR+ILRVG N DGYW  + LC QL+ +F  FE+SREPGRQML +FDNSTGH AYSPDALRAQN+ A  GG+Q  PR F + GR I T F E  VL
Sbjct:  130 MEITDEGATLSRSDTYVGRCKPCEEYPDGMKTKKVSDAVHSLERVLSELNIDCKESGPEYNLARSARIILRVGKNLDGYWDSNRLCVQLEAIFAAFEISREPGRQMLAVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEYNGRTIYTTFREGDVL 289

[Close]

BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Match: A0A6H5JDB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB4_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 6.080e-61
Identity = 99/160 (61.88%), Postives = 113/160 (70.62%), Query Frame = 2

Query:    2 MEMKDGKLVEGRSDTYVGRCPPCQEYPDGLMRKSVR*AVEILENLLPDLEIDCKGGGPEYNRQRSARVILRVGVNFDGYWTCDDLCKQLKPLFVVFELSREPGRQMLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHEGRRIPTVFEEDSVL 481
            ME+ D      RSDTYVGRC PC+EYPDG+  K V  AV  LE +L +L IDCK  GPEYN  RSAR+ILRVG N DGYW  + LC QL+ +F  FE+SREPGRQML +FDNSTGH AYSPDALRAQN+ A  GG+Q  PR F + GR I T F E  VL
Sbjct:  337 MEITDEGATLSRSDTYVGRCKPCEEYPDGMKTKKVSDAVHSLERVLSELNIDCKESGPEYNLARSARIILRVGKNLDGYWDSNRLCVQLEAIFAAFEISREPGRQMLAVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEYNGRTIYTTFREGDVL 496

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BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 4.590e-60
Identity = 98/159 (61.64%), Postives = 112/159 (70.44%), Query Frame = 2

Query:    5 EMKDGKLVEGRSDTYVGRCPPCQEYPDGLMRKSVR*AVEILENLLPDLEIDCKGGGPEYNRQRSARVILRVGVNFDGYWTCDDLCKQLKPLFVVFELSREPGRQMLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHEGRRIPTVFEEDSVL 481
            E+ D      RSDTYVGRC PC+EYPDG+  K V  AV  LE +L +L IDCK  GPEYN  RSAR+ILRVG N DGYW  + LC QL+ +F  FE+SREPGRQML +FDNSTGH AYSPDALRAQN+ A  GG+Q  PR F + GR I T F E  VL
Sbjct:  262 EITDEGATLSRSDTYVGRCKPCEEYPDGMKTKKVSDAVHSLERVLSELNIDCKESGPEYNLARSARIILRVGKNLDGYWDSNRLCVQLEAIFAAFEISREPGRQMLAVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEYNGRTIYTTFREGDVL 420

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BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.440e-59
Identity = 99/160 (61.88%), Postives = 113/160 (70.62%), Query Frame = 2

Query:    2 MEMKDGKLVEGRSDTYVGRCPPCQEYPDGLMRKSVR*AVEILENLLPDLEIDCKGGGPEYNRQRSARVILRVGVNFDGYWTCDDLCKQLKPLFVVFELSREPGRQMLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHEGRRIPTVFEEDSVL 481
            ME+ D      RSDTYVGRC PC+EYPDG+  K V  AV  LE +L +L IDCK  GPEYN  RSAR+ILRVG N DGYW  + LC QL+ +F  FE+SREPGRQML +FDNSTGH AYSPDALRAQN+ A  GG+Q  PR F + GR I T F E  VL
Sbjct:  695 MEITDEGATLSRSDTYVGRCKPCEEYPDGMKTKKVSDAVHSLERVLSELNIDCKESGPEYNLARSARIILRVGKNLDGYWDSNRLCVQLEAIFAAFEISREPGRQMLAVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEYNGRTIYTTFREGDVL 854

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BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.770e-58
Identity = 98/176 (55.68%), Postives = 113/176 (64.20%), Query Frame = 2

Query:    2 MEMKDGKLVEGRSDTYVGRCPPCQEYPDGLMRKSVR*AVEILENLLPDLEIDCKGGGPEYNRQRSARVILRVGVNFDGYWTC----------------DDLCKQLKPLFVVFELSREPGRQMLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHEGRRIPTVFEEDSVL 481
            ME+ D      RSDTYVGRC PC+EYPDG+  K V  AV  LE +L +L IDCK  GPEYN  RSAR+ILRVG N DGYW                  + LC QL+ +F  FE+SR+PGRQML +FDNSTGH AYSPDALRAQN+ A  GG+Q  PR F + GR I T F E  VL
Sbjct:    4 MEVTDEGATLSRSDTYVGRCKPCEEYPDGMKTKKVSDAVHSLERVLSELNIDCKESGPEYNLARSARIILRVGKNLDGYWXSAXXXXXXXXXXXXXDSNRLCVQLEAIFAAFEISRQPGRQMLEVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEYNGRTIYTTFREGDVL 179

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BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Match: A0A6H5KGB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB3_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 8.560e-52
Identity = 85/143 (59.44%), Postives = 105/143 (73.43%), Query Frame = 2

Query:   38 SDTYVGRCPPCQEYPDGLMRKSVR*AVEILENLLPDLEIDCKGGGPEYNRQRSARVILRVGVNFDGYWTCDDLCKQLKPLFVVFELSREPGRQMLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHEGRRIPTVFE 466
            S+ Y+GRC PC+E+PDG+ +K V   V++LE +L +L IDCK    EYN  R+AR+ILRVG N DGYW C+ LC QL  +F  FELSREPGRQML +FDNSTGH A+SPDALRAQN+A  AGG+Q  P  F + GR I T F+
Sbjct:  124 SEYYIGRCKPCEEHPDGV-KKKVADVVKVLERVLSELGIDCKA---EYNIARAARIILRVGKNLDGYWDCNRLCVQLPAIFAAFELSREPGRQMLMVFDNSTGHNAFSPDALRAQNIALSAGGEQVPPHSFEYNGRTIYTTFQ 262

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BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.120e-20
Identity = 63/151 (41.72%), Postives = 82/151 (54.30%), Query Frame = 2

Query:   35 RSDTYVGRCPPCQEYPDGLMRKSVR*AVEILENLLPDLEIDCKGGGPEYNRQRSARVILRVGVNFDGYWTCDDLCKQLKPLFVVFELSREPGRQMLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHE-GRRIPTVFEE-DSVL 481
            RS  Y GR     E  DG   K V+ AVE+L+ +      DC G     N  R+  VI+ VG N DGYWT D +CKQ+  L  + EL+ EP R M+ +FDNSTGHAAY   AL A ++    GG Q +   F+ + G  +   F E D+VL
Sbjct:  473 RSGIYFGRKEGDGE--DGHAVKFVQDAVELLKAM----PADC-GVTKTKNDPRTGAVIMTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVL 616

[Close]

BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.150e-20
Identity = 63/151 (41.72%), Postives = 82/151 (54.30%), Query Frame = 2

Query:   35 RSDTYVGRCPPCQEYPDGLMRKSVR*AVEILENLLPDLEIDCKGGGPEYNRQRSARVILRVGVNFDGYWTCDDLCKQLKPLFVVFELSREPGRQMLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHE-GRRIPTVFEE-DSVL 481
            RS  Y GR     E  DG   K V+ AVE+L+ +      DC G     N  R+  VI+ VG N DGYWT D +CKQ+  L  + EL+ EP R M+ +FDNSTGHAAY   AL A ++    GG Q +   F+ + G  +   F E D+VL
Sbjct:  927 RSGIYFGRKEGDGE--DGHAVKFVQDAVELLKAM----PADC-GVTKTKNDPRTGAVIMTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVL 1070

[Close]

BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Match: A0A6H5JRU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.180e-20
Identity = 62/150 (41.33%), Postives = 80/150 (53.33%), Query Frame = 2

Query:   35 RSDTYVGRCPPCQEYPDGLMRKSVR*AVEILENLLPDLEIDCKGGGPEYNRQRSARVILRVGVNFDGYWTCDDLCKQLKPLFVVFELSREPGRQMLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHEGRRIPTVFEE-DSVL 481
            RS  Y GR     E  DG   K V+ AVE+L+ +      DC G     N  R+  VI+ VG N DGYWT D +CKQ+  L  + EL+ EP R M+ +FDNSTGHAAY   AL A ++    GG Q +      +G  +   F E D+VL
Sbjct:  213 RSGIYFGRKEGDGE--DGHAVKFVQDAVELLKAM----PADC-GVTKTKNDPRTGAVIMTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDFLDDQGNLVHATFREGDTVL 355

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig995.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K8V9_9PHAE	8.550e-63	61.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K344_9PHAE	2.430e-62	61.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JDB4_9PHAE	6.080e-61	61.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2M3_9PHAE	4.590e-60	61.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7W4_9PHAE	1.440e-59	61.88	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7K1_9PHAE	1.770e-58	55.68	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KGB3_9PHAE	8.560e-52	59.44	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K659_9PHAE	2.120e-20	41.72	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K527_9PHAE	2.150e-20	41.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRU6_9PHAE	2.180e-20	41.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig995	contig	P-littoralis_Contig995:65122..65833 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	112098.XP_008621396.1
Model size	481
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	no signal peptide or anchor
Exons	2
Evalue	0.000806
EggNOG OGs	2D16T@1\|root,2SGXK@2759\|Eukaryota
Cds size	165

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791919.3267615-CDS-P-littoralis_Contig995:65121..65286	1680791919.3267615-CDS-P-littoralis_Contig995:65121..65286	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig995 65122..65286 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791919.3381295-UTR-P-littoralis_Contig995:65286..65331	1680791919.3381295-UTR-P-littoralis_Contig995:65286..65331	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig995 65287..65331 -
1680791919.351897-UTR-P-littoralis_Contig995:65562..65833	1680791919.351897-UTR-P-littoralis_Contig995:65562..65833	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig995 65563..65833 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig995.5.1	prot_P-littoralis_Contig995.5.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig995 65122..65286 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig995:65122..65833-
coding sequence from alignment at P-littoralis_Contig995:65122..65833-

protein sequence of mRNA_P-littoralis_Contig995.5.1

>prot_P-littoralis_Contig995.5.1 ID=prot_P-littoralis_Contig995.5.1|Name=mRNA_P-littoralis_Contig995.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MLNIFDNSTGHAAYSPDALRAQNVAAGAGGQQAVPRPFVHEGRRIPTVFE
EDSVL

mRNA from alignment at P-littoralis_Contig995:65122..65833-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig995.5.1 ID=mRNA_P-littoralis_Contig995.5.1|Name=mRNA_P-littoralis_Contig995.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=712bp|location=Sequence derived from alignment at P-littoralis_Contig995:65122..65833- (Pylaiella littoralis U1_48)
GATGGAGATGAAGGACGGGAAGCTTGTGGAGGGGCGGTCGGACACCTACG
TCGGGCGCTGTCCACCTTGCCAAGAGTACCCCGATGGGTTGATGAGGAAG
AGCGTTCGGTAGGCGGTGGAGATTCTTGAGAATCTTTTGCCAGACCTCGA
GATCGACTGTAAAGGAGGTGGTCCCGAGTACAACCGCCAGCGCTCTGCAA
GGGTTATCCTTCGCGTGGGGGTCAACTTCGATGGGTATTGGACTTGCGAC
GACTTGTGCAAACAGCTCAAGGTGGGTGCCCGGCAGAGTTTGTGTGATAT
TTTGTTTTTTAGTGCGGTACATATATGTGTATACATATGTATACATGATA
TAAACCATGGACCGCCCAAGAATACATTCTCTTTCGCCTCGCGCATTGGT
TTCGAGTGTCCATACGGTGTAGGCCAAAGGGGAAGTATGTTTGCTGTTTT
TTTTTCTGTCATGTGTTGTAAACCCCCTTGTGTTTTTGCTCTATTTTGGC
AGCCTTTGTTTGTGGTGTTCGAGTTGTCTAGGGAGCCCGGTCGACAGATG
CTCAACATCTTCGACAACTCCACCGGGCATGCAGCCTACAGCCCCGATGC
CTTGAGGGCGCAAAACGTCGCCGCAGGCGCGGGGGGTCAGCAGGCAGTCC
CGCGCCCGTTTGTTCACGAAGGCCGACGGATACCTACAGTGTTCGAGGAG
GACAGCGTGCTT

Coding sequence (CDS) from alignment at P-littoralis_Contig995:65122..65833-

>mRNA_P-littoralis_Contig995.5.1 ID=mRNA_P-littoralis_Contig995.5.1|Name=mRNA_P-littoralis_Contig995.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig995:65122..65833- (Pylaiella littoralis U1_48)
ATGCTCAACATCTTCGACAACTCCACCGGGCATGCAGCCTACAGCCCCGA
TGCCTTGAGGGCGCAAAACGTCGCCGCAGGCGCGGGGGGTCAGCAGGCAG
TCCCGCGCCCGTTTGTTCACGAAGGCCGACGGATACCTACAGTGTTCGAG
GAGGACAGCGTGCTT