mRNA_P-littoralis_Contig995.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig995.3.1
Unique NamemRNA_P-littoralis_Contig995.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig995.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig995contigP-littoralis_Contig995:42651..44728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65672.G4TU46
Model size241
Max annot lvl65672.G4TU46|-
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.69e-06
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size216
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791919.235066-CDS-P-littoralis_Contig995:42650..426831680791919.235066-CDS-P-littoralis_Contig995:42650..42683Pylaiella littoralis U1_48CDSP-littoralis_Contig995 42651..42683 -
1680791919.2503755-CDS-P-littoralis_Contig995:43326..433711680791919.2503755-CDS-P-littoralis_Contig995:43326..43371Pylaiella littoralis U1_48CDSP-littoralis_Contig995 43327..43371 -
1680791919.2686-CDS-P-littoralis_Contig995:44018..441221680791919.2686-CDS-P-littoralis_Contig995:44018..44122Pylaiella littoralis U1_48CDSP-littoralis_Contig995 44019..44122 -
1680791919.2806606-CDS-P-littoralis_Contig995:44670..447041680791919.2806606-CDS-P-littoralis_Contig995:44670..44704Pylaiella littoralis U1_48CDSP-littoralis_Contig995 44671..44704 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791919.293566-UTR-P-littoralis_Contig995:44704..447281680791919.293566-UTR-P-littoralis_Contig995:44704..44728Pylaiella littoralis U1_48UTRP-littoralis_Contig995 44705..44728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig995.3.1prot_P-littoralis_Contig995.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig995 42651..44704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig995.3.1

>prot_P-littoralis_Contig995.3.1 ID=prot_P-littoralis_Contig995.3.1|Name=mRNA_P-littoralis_Contig995.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MECANTEGEACGGSYAMSVYQIESTTLVVGDRYSFVNCAEDGPGPRVMPV
GPFSETSMSAEVCRDICLDLDP
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mRNA from alignment at P-littoralis_Contig995:42651..44728-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig995.3.1 ID=mRNA_P-littoralis_Contig995.3.1|Name=mRNA_P-littoralis_Contig995.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2078bp|location=Sequence derived from alignment at P-littoralis_Contig995:42651..44728- (Pylaiella littoralis U1_48)
TGGACGGAATCCCTAGGTTGCACCATGGAGTGCGCGAACACCGAGGGGGA
AGCCTGCGGTAGGTTCCGAAACTCTGGTTTGCGCCCCGCTACATCACGAG
TTCTGATATGCACGTCGGTGTATGATACGAGGTTTATGTTCGCATATGTC
TGGACTGCTACTGTAGGTTGTTCGGAGCTGACTGTAAAAGTTTCGCCGAG
GCACCTTGTATTCAAGGGCAATCTCTTGTCAGAGTGGGGATCGAGTCGAA
CTTGATGGACTTCATACTTGTGACAACACCCAGACGTTTATTAACATTGA
TGCACGTCTTCAGCTACATTCTTATATTCTCGTGAAAGCCTATACATACA
GCAAAACGCATCCACCGGTACCTTCGATACGCTGTTTTGGCCGTCCACTC
TCCAAACCTATCACCCCTTTTGCCACTTCAAACCATCCGTATTCCGTGTA
CTGCTCCAACCGGTGATGGAGAAGACCTCTGGCCGTCTCACGGTCCGTGA
CATACACAGGAAACACATTCGGTACCGTGTGCATGCACTCTCGATATTCC
CATTATGGCAAAATATTTGCTTGTTTGCTTGTTATTGGTGCTGTTGTTGC
AAACAGGTGGGTCCTACGCCATGTCGGTGTACCAGATCGAGTCGACGACG
CTCGTTGTGGGCGACCGTTACAGCTTTGTTAACTGCGCTGAAGATGGCCC
AGGCCCTAGGGTGAGAGGGGGCCTCATCTCGTCATGATACTTTACCTTGT
AACGAAGCCACGGCAGCGGTGGTGACTGTGGTATTTTAATGGAACGCCCC
TCCCCCCCACCCCTCCGAGATTTCCAACACAGGAAAGGTTTACATTTTAA
CCCGAAACCATGGTACACTTAATGCTTAGGAAACTCAAAAATCGCACCTA
CCTGGGAGTGCATCTGGATGCAAACAACTTGAACAATGTTTGGGATAGAG
GCGCTTGGCAAGAAAACGCGAAGATGAAACTGCTCGATAAAATGCTTTCC
GGATAATTCTACTTCGCAATAGGGCGGAATAAGTTCACTTGGGAAACCCA
GTTGTGGGCAAAACAACTGTTTGGATTTCATGTGGGATAAAGATCGCTTG
GATTTCGAGCATGCTCCCCAAAGCGGATCAATCGCTCCTATCTGCGTCTT
GTGTCCAAACCCCGGATGCGTATTCCGGACGTTTTGACCTCGGTGTCGCT
GTTTTCCCTATTATTGCTCTCGCCTCTGTTGTTTCTTTGCTTCTACTGCG
GAGGTCCATTCCATGCAGACTCGCCCACTTGTACTTGTTCTCCCCATTTT
TGTCGTATGTCGCCTTATTCTCGTGTATTATATGCCTGGTGGTTGTTTTG
AACGCAGGTTATGCCTGTCGGCCCCTTTTCGGAGACTTCCATGTCTGCAG
AGGTGAGTTGGGTTCCACGAAGGGGAGGTGCTCCAGCACGCGTCTCGATT
TTTTATCATAATAATCTTGTCGACACTTACACGGTTTCGTTTAGTCCACA
TTCTTCAAGTTGTCAGTTAGTGTATCCGGTAGTATGTTTACAGTAGTTTA
TTCTCGTTCTGATATCAGCGTTAATTTGAGGCCACAAAGCGCACCCATTC
AGTGCAGCATATACCATACTGCGCAACGGCAGTCCTTTCGTGGTATGTAC
GCTTTCGAGCAGAATCAGTTTTCCAAAACAACCACGCATGCAATGACTTT
GGTCATTCTTTGATTGCTTGCCTTTCTTTCTCGTCATCGACCGTGTGTGC
CGCAAATGTTTGAATATTTTCAGACGGAGGTTGTCACTGCAGTATCACGC
AAAATAATCCTCCGGAGGATTGTGTTTCTTTTTCGTTTTGTACTTGTTTT
TTTGTTTTAGTTCTACAAACATATCAGTGTGTCCGTCTCTCTCTAGACGA
CGATCTAGAGTAGATTAGCGGCGAACACAAAGCATAGATACATCTACCTG
TTTTTCTATACTCATCAGATAATATAAAGTTGCAGCTCCCCTGTGGTTAT
CTTTTCGAACGTTTGTCCACTGTCCTCCCATGCGCCGCCGCGCAGGTCTG
CCGTGACATCTGCCTTGACCTGGACCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig995:42651..44728-

>mRNA_P-littoralis_Contig995.3.1 ID=mRNA_P-littoralis_Contig995.3.1|Name=mRNA_P-littoralis_Contig995.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig995:42651..44728- (Pylaiella littoralis U1_48)
ATGGAGTGCGCGAACACCGAGGGGGAAGCCTGCGGTGGGTCCTACGCCAT
GTCGGTGTACCAGATCGAGTCGACGACGCTCGTTGTGGGCGACCGTTACA
GCTTTGTTAACTGCGCTGAAGATGGCCCAGGCCCTAGGGTTATGCCTGTC
GGCCCCTTTTCGGAGACTTCCATGTCTGCAGAGGTCTGCCGTGACATCTG
CCTTGACCTGGACCCC
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