mRNA_P-littoralis_Contig995.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig995.1.1
Unique NamemRNA_P-littoralis_Contig995.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig995.1.1 vs. uniprot
Match: A0A6H5K994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K994_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.690e-14
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 LPAGWAEEYGADGSWKFKTSKGGTPVSVSVTRPGPGGGCLVKNITFHQVNVSDIFQDLRKTITTTEEL 204
            LPAGW EE+G D SW FK +  GTPV++SV +PGPGG   V  ITFH  +V+  F  L+K I T  +L
Sbjct:  105 LPAGWCEEFGPDHSWTFKKTHDGTPVAISVEKPGPGGAGRVDKITFHHRDVTADFIGLKKFIHTAGDL 172
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BLAST of mRNA_P-littoralis_Contig995.1.1 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.120e-8
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    7 AGWAEEYGADGSWKFKTSKGGTPVSVSVT 93
            +GWAEEY ADGSWKFKTSKGGTPVSVS++
Sbjct:  184 SGWAEEYSADGSWKFKTSKGGTPVSVSLS 212
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig995.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K994_9PHAE6.690e-1452.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRI1_9PHAE1.120e-886.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig995contigP-littoralis_Contig995:335..726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size211
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791919.1867602-CDS-P-littoralis_Contig995:334..4631680791919.1867602-CDS-P-littoralis_Contig995:334..463Pylaiella littoralis U1_48CDSP-littoralis_Contig995 335..463 -
1680791919.2027912-CDS-P-littoralis_Contig995:645..7261680791919.2027912-CDS-P-littoralis_Contig995:645..726Pylaiella littoralis U1_48CDSP-littoralis_Contig995 646..726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig995.1.1prot_P-littoralis_Contig995.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig995 335..726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig995.1.1

>prot_P-littoralis_Contig995.1.1 ID=prot_P-littoralis_Contig995.1.1|Name=mRNA_P-littoralis_Contig995.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
LPAGWAEEYGADGSWKFKTSKGGTPVSVSVTRPGPGGGCLVKNITFHQVN
VSDIFQDLRKTITTTEELGE
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mRNA from alignment at P-littoralis_Contig995:335..726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig995.1.1 ID=mRNA_P-littoralis_Contig995.1.1|Name=mRNA_P-littoralis_Contig995.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=392bp|location=Sequence derived from alignment at P-littoralis_Contig995:335..726- (Pylaiella littoralis U1_48)
CTACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTT
CAAGACTAGCAAGGGTGGAACGCCCGTCTCGGTGAGCCTATCCTGGTGAT
GTGCGCGGTTGAATTTTGTCTGTGTTGTAGAGATTGCAGATGGGTGGGCT
AGCTGGCGTGATAGTGCGTAGGTTACATCGCGTCCTAGCCCCGCTCTTGT
ACCACCAAGTTTATTTAGTGGCGCTCCTTCTCAAAGGCCCCGTATTTTTT
TGTCGCTTTACAGGTCTCCGTTACGAGGCCTGGACCTGGTGGAGGATGCC
TTGTGAAAAACATAACATTCCACCAGGTCAACGTGTCCGATATCTTCCAA
GACTTGCGCAAGACCATCACCACAACAGAAGAACTCGGAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig995:335..726-

>mRNA_P-littoralis_Contig995.1.1 ID=mRNA_P-littoralis_Contig995.1.1|Name=mRNA_P-littoralis_Contig995.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig995:335..726- (Pylaiella littoralis U1_48)
CTACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTT
CAAGACTAGCAAGGGTGGAACGCCCGTCTCGGTCTCCGTTACGAGGCCTG
GACCTGGTGGAGGATGCCTTGTGAAAAACATAACATTCCACCAGGTCAAC
GTGTCCGATATCTTCCAAGACTTGCGCAAGACCATCACCACAACAGAAGA
ACTCGGAGAG
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