mRNA_P-littoralis_Contig994.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig994.9.1
Unique NamemRNA_P-littoralis_Contig994.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig994.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig994contigP-littoralis_Contig994:36931..37401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size471
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791918.6443002-UTR-P-littoralis_Contig994:36930..369791680791918.6443002-UTR-P-littoralis_Contig994:36930..36979Pylaiella littoralis U1_48UTRP-littoralis_Contig994 36931..36979 -
1680791918.6710486-UTR-P-littoralis_Contig994:37390..374011680791918.6710486-UTR-P-littoralis_Contig994:37390..37401Pylaiella littoralis U1_48UTRP-littoralis_Contig994 37391..37401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791918.6552286-CDS-P-littoralis_Contig994:36979..373901680791918.6552286-CDS-P-littoralis_Contig994:36979..37390Pylaiella littoralis U1_48CDSP-littoralis_Contig994 36980..37390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig994.9.1prot_P-littoralis_Contig994.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig994 36980..37390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig994.9.1

>prot_P-littoralis_Contig994.9.1 ID=prot_P-littoralis_Contig994.9.1|Name=mRNA_P-littoralis_Contig994.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MTTSSSGTRQRKKRGGGDGGSAAGSPAGDTVDLESTLAEYLKSHTDDAET
KERKLKIKENESKTAFMQAETFREVAAGSPGSKKRKLDVEVMDAETRKLQ
AQNTKTQLDYQAAQAAQTSKLTEGFLIAMERMSKRM*
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mRNA from alignment at P-littoralis_Contig994:36931..37401-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig994.9.1 ID=mRNA_P-littoralis_Contig994.9.1|Name=mRNA_P-littoralis_Contig994.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig994:36931..37401- (Pylaiella littoralis U1_48)
AGGTGCTGGACATGACCACTTCATCCAGCGGTACACGCCAGCGCAAGAAG
CGTGGAGGTGGCGATGGGGGTTCGGCCGCCGGATCCCCTGCCGGCGACAC
GGTAGACCTAGAGAGTACACTTGCAGAGTATCTGAAATCTCACACGGACG
ACGCTGAGACTAAGGAAAGGAAGCTCAAGATTAAGGAAAACGAGTCAAAA
ACCGCCTTTATGCAGGCCGAAACCTTTCGTGAAGTAGCTGCCGGTAGCCC
TGGTTCTAAGAAGCGCAAGCTGGATGTAGAGGTCATGGACGCCGAGACCC
GCAAACTACAGGCGCAGAACACAAAAACGCAGCTTGATTATCAGGCTGCC
CAAGCCGCACAGACCAGTAAGCTCACCGAAGGCTTCCTCATCGCCATGGA
GAGGATGTCGAAGCGCATGTAAACTCGCGTAGGTTGGGGTGATTGGCTTT
CTTTTGTGGGTGGCGTGGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig994:36931..37401-

>mRNA_P-littoralis_Contig994.9.1 ID=mRNA_P-littoralis_Contig994.9.1|Name=mRNA_P-littoralis_Contig994.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig994:36931..37401- (Pylaiella littoralis U1_48)
ATGACCACTTCATCCAGCGGTACACGCCAGCGCAAGAAGCGTGGAGGTGG
CGATGGGGGTTCGGCCGCCGGATCCCCTGCCGGCGACACGGTAGACCTAG
AGAGTACACTTGCAGAGTATCTGAAATCTCACACGGACGACGCTGAGACT
AAGGAAAGGAAGCTCAAGATTAAGGAAAACGAGTCAAAAACCGCCTTTAT
GCAGGCCGAAACCTTTCGTGAAGTAGCTGCCGGTAGCCCTGGTTCTAAGA
AGCGCAAGCTGGATGTAGAGGTCATGGACGCCGAGACCCGCAAACTACAG
GCGCAGAACACAAAAACGCAGCTTGATTATCAGGCTGCCCAAGCCGCACA
GACCAGTAAGCTCACCGAAGGCTTCCTCATCGCCATGGAGAGGATGTCGA
AGCGCATGTAA
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