mRNA_P-littoralis_Contig994.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig994.5.1
Unique NamemRNA_P-littoralis_Contig994.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig994.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig994contigP-littoralis_Contig994:33301..33779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size479
Hectar predicted targeting categorymitochondrion
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791918.6026866-UTR-P-littoralis_Contig994:33300..334701680791918.6026866-UTR-P-littoralis_Contig994:33300..33470Pylaiella littoralis U1_48UTRP-littoralis_Contig994 33301..33470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791918.613159-CDS-P-littoralis_Contig994:33470..337791680791918.613159-CDS-P-littoralis_Contig994:33470..33779Pylaiella littoralis U1_48CDSP-littoralis_Contig994 33471..33779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig994.5.1prot_P-littoralis_Contig994.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig994 33471..33779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig994.5.1

>prot_P-littoralis_Contig994.5.1 ID=prot_P-littoralis_Contig994.5.1|Name=mRNA_P-littoralis_Contig994.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MVRRRHIRQVQINRRYGALCAGERVRVKLLLRQSMALFISAENQEDEDEA
NRLRHLGAMVVMVVCRIWRDETELAPTIRGGEPVIDDLTDDEAWANYRFR
KPD
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mRNA from alignment at P-littoralis_Contig994:33301..33779+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig994.5.1 ID=mRNA_P-littoralis_Contig994.5.1|Name=mRNA_P-littoralis_Contig994.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=479bp|location=Sequence derived from alignment at P-littoralis_Contig994:33301..33779+ (Pylaiella littoralis U1_48)
CGCCTCACAACGCGATTGGTCAACTTGCCCCGGCATCACTCGAGATTCAA
AAGGTGACCCGTTTGCTACACCAGCGACTCAACCGTCTGTTAGCAAAACG
AGCAGTGCGTGTCGTCTAGAGAGCGAAGCTCGGTTCGAGGTGGCGGAGAA
AGGGTCGCTTCTCGGAGACGATGGTGAGGCGGCGTCACATCAGACAAGTT
CAGATCAATCGGCGCTATGGCGCCCTCTGTGCGGGCGAGCGTGTACGGGT
GAAGCTGCTTCTGCGGCAGTCGATGGCGCTGTTTATCTCCGCAGAGAATC
AAGAGGATGAGGACGAGGCAAACCGGTTGAGGCATCTAGGTGCCATGGTC
GTCATGGTCGTGTGTCGCATATGGCGCGATGAGACGGAGCTGGCGCCAAC
CATTCGCGGGGGCGAACCCGTCATAGACGACCTCACCGATGACGAAGCAT
GGGCAAACTACAGGTTTCGCAAGCCGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig994:33301..33779+

>mRNA_P-littoralis_Contig994.5.1 ID=mRNA_P-littoralis_Contig994.5.1|Name=mRNA_P-littoralis_Contig994.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig994:33301..33779+ (Pylaiella littoralis U1_48)
ATGGTGAGGCGGCGTCACATCAGACAAGTTCAGATCAATCGGCGCTATGG
CGCCCTCTGTGCGGGCGAGCGTGTACGGGTGAAGCTGCTTCTGCGGCAGT
CGATGGCGCTGTTTATCTCCGCAGAGAATCAAGAGGATGAGGACGAGGCA
AACCGGTTGAGGCATCTAGGTGCCATGGTCGTCATGGTCGTGTGTCGCAT
ATGGCGCGATGAGACGGAGCTGGCGCCAACCATTCGCGGGGGCGAACCCG
TCATAGACGACCTCACCGATGACGAAGCATGGGCAAACTACAGGTTTCGC
AAGCCGGAC
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