mRNA_P-littoralis_Contig994.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig994.17.1
Unique NamemRNA_P-littoralis_Contig994.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig994.17.1 vs. uniprot
Match: D8LPH1_ECTSI (EsV-1-149 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH1_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 3.970e-70
Identity = 127/240 (52.92%), Postives = 156/240 (65.00%), Query Frame = 1 
Query:   19 ILALPDDVLRPLLGFTKTHSYSMIGAVCRAFRDQFLPRERTTRTSKFTHSLELFDLAITLNISFKSASLLDDLISRDEIEVIPRALTRAEVEWDPFCVERAAEVGSFRVFRWLV---TTE--LAWLPENGHSSAANAGDLDMMRFLVESGAGFPDQRSFHAANERRDHAIASWLQELELDCSYIMTRAARDDNVDVFAQSPGDDD---GAEYITQAYIHGSFDVLEFFTCSVGSGPTAKD 714
            +L +  D L+ +L F K  SY++IG VCR FR+ +   ER TRTSK+T SL+LF  A   NI F+S  LLDDLISRDEI+VIP  LTR   EWD FCV+RAAE  S+R FRWL    TT+  L WL EN H +AA  G+L+MM +LVESGAGFPD  S       RD  I  WL+EL LD ++   +AAR+D+V VF Q+   DD      YI +A IHG+F+VLEFF   VG GPT  D
Sbjct:    4 LLLISKDALQHILSFVKADSYAIIGPVCRDFRNCYGSGERVTRTSKYTQSLQLFRQATATNIEFRSLCLLDDLISRDEIDVIPPLLTRG-YEWDHFCVQRAAETNSYRFFRWLQWLQTTDDGLPWLVENAHRAAAKEGNLEMMIYLVESGAGFPDSGSLAVT---RDCKIVEWLRELRLDPAHAFVKAAREDDVCVFEQTESFDDHGLNRMYIKEACIHGAFNVLEFFRVFVGVGPTPSD 239
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BLAST of mRNA_P-littoralis_Contig994.17.1 vs. uniprot
Match: Q8QND3_ESV1K (EsV-1-149 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND3_ESV1K)

HSP 1 Score: 221 bits (563), Expect = 4.720e-68
Identity = 120/233 (51.50%), Postives = 153/233 (65.67%), Query Frame = 1 
Query:   28 LPDDVLRPLLGFTKTHSYSMIGAVCRAFRDQFLPRERTTRTSKFTHSLELFDLAITLNISFKSASLLDDLISRDEIEVIPRALTRAEVEWDPFCVERAAEVGSFRVFRWLVTTE-LAWLPENGHSSAANAGDLDMMRFLVESGAGFPDQRSFHAANERRDHAIASWLQELELDCSYIMTRAARDDNVDVFAQSPGDDD---GAEYITQAYIHGSFDVLEFFTCSVGSGPTAKD 714
            LP D L+ +L F K  S+++IG+VCR FR+ +   ER TRTSK+T SL LF  A   NI FKS  LLDDLISRDEI+VIP  L R   EWD FCV+RAAE  +++ F+WL TT+ L WL EN H +AA  G+L+MM +LV+SGAGFPD  S    N   D  I  WL+EL+LD ++   RAAR+D+V VF Q+   DD       + +A +HG+F+VLEFF   V  GPT  D
Sbjct:   54 LPKDTLQHILSFVKEDSFAIIGSVCRDFRNCYGSGERVTRTSKYTQSLRLFQQATAKNIEFKSLGLLDDLISRDEIDVIPSLLARG-YEWDHFCVQRAAETNNYKFFQWLQTTDDLPWLVENAHRAAAKEGNLEMMIYLVDSGAGFPDSGSRAVTN---DCKIVEWLRELQLDPAHAFVRAAREDDVCVFEQTESFDDHGLNRACVREACVHGAFNVLEFFRVFVDVGPTVSD 282
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig994.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPH1_ECTSI3.970e-7052.92EsV-1-149 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QND3_ESV1K4.720e-6851.50EsV-1-149 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig994contigP-littoralis_Contig994:77132..77845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size714
Hectar predicted targeting categoryother localisation
Exons1
Cds size714
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791919.1140192-CDS-P-littoralis_Contig994:77131..778451680791919.1140192-CDS-P-littoralis_Contig994:77131..77845Pylaiella littoralis U1_48CDSP-littoralis_Contig994 77132..77845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig994.17.1prot_P-littoralis_Contig994.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig994 77132..77845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig994.17.1

>prot_P-littoralis_Contig994.17.1 ID=prot_P-littoralis_Contig994.17.1|Name=mRNA_P-littoralis_Contig994.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=238bp
MHGAPAILALPDDVLRPLLGFTKTHSYSMIGAVCRAFRDQFLPRERTTRT
SKFTHSLELFDLAITLNISFKSASLLDDLISRDEIEVIPRALTRAEVEWD
PFCVERAAEVGSFRVFRWLVTTELAWLPENGHSSAANAGDLDMMRFLVES
GAGFPDQRSFHAANERRDHAIASWLQELELDCSYIMTRAARDDNVDVFAQ
SPGDDDGAEYITQAYIHGSFDVLEFFTCSVGSGPTAKD
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mRNA from alignment at P-littoralis_Contig994:77132..77845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig994.17.1 ID=mRNA_P-littoralis_Contig994.17.1|Name=mRNA_P-littoralis_Contig994.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig994:77132..77845+ (Pylaiella littoralis U1_48)
ATGCATGGTGCTCCCGCAATCCTCGCTTTACCGGACGACGTCCTCCGTCC
CCTTCTCGGATTCACCAAGACGCATTCTTACTCTATGATCGGCGCGGTGT
GCAGAGCGTTCCGAGACCAGTTCTTGCCCCGGGAAAGAACGACCAGGACG
TCCAAGTTCACGCATTCCTTGGAGCTGTTCGACCTGGCTATCACGCTCAA
CATCTCCTTCAAGAGCGCCTCTCTCCTGGACGACCTCATCTCGCGCGACG
AGATTGAGGTTATCCCACGGGCGTTGACTCGAGCAGAAGTCGAGTGGGAC
CCCTTCTGCGTCGAACGCGCGGCGGAGGTGGGGTCGTTCCGCGTTTTTCG
TTGGCTGGTGACGACGGAGCTCGCGTGGCTTCCCGAGAACGGGCACTCCT
CGGCGGCGAACGCGGGAGACCTCGACATGATGAGGTTCTTGGTTGAAAGC
GGCGCGGGTTTCCCGGACCAGAGATCGTTCCACGCGGCCAACGAGCGCCG
GGACCACGCCATCGCCAGCTGGCTCCAGGAGCTCGAGCTCGACTGTTCGT
ACATCATGACCAGGGCCGCCAGGGACGACAACGTCGACGTGTTCGCACAG
AGCCCCGGCGACGACGATGGCGCCGAGTACATAACGCAAGCGTACATCCA
CGGTTCCTTTGACGTCCTTGAGTTCTTCACGTGCTCGGTCGGTAGTGGTC
CGACCGCCAAAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig994:77132..77845+

>mRNA_P-littoralis_Contig994.17.1 ID=mRNA_P-littoralis_Contig994.17.1|Name=mRNA_P-littoralis_Contig994.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig994:77132..77845+ (Pylaiella littoralis U1_48)
ATGCATGGTGCTCCCGCAATCCTCGCTTTACCGGACGACGTCCTCCGTCC
CCTTCTCGGATTCACCAAGACGCATTCTTACTCTATGATCGGCGCGGTGT
GCAGAGCGTTCCGAGACCAGTTCTTGCCCCGGGAAAGAACGACCAGGACG
TCCAAGTTCACGCATTCCTTGGAGCTGTTCGACCTGGCTATCACGCTCAA
CATCTCCTTCAAGAGCGCCTCTCTCCTGGACGACCTCATCTCGCGCGACG
AGATTGAGGTTATCCCACGGGCGTTGACTCGAGCAGAAGTCGAGTGGGAC
CCCTTCTGCGTCGAACGCGCGGCGGAGGTGGGGTCGTTCCGCGTTTTTCG
TTGGCTGGTGACGACGGAGCTCGCGTGGCTTCCCGAGAACGGGCACTCCT
CGGCGGCGAACGCGGGAGACCTCGACATGATGAGGTTCTTGGTTGAAAGC
GGCGCGGGTTTCCCGGACCAGAGATCGTTCCACGCGGCCAACGAGCGCCG
GGACCACGCCATCGCCAGCTGGCTCCAGGAGCTCGAGCTCGACTGTTCGT
ACATCATGACCAGGGCCGCCAGGGACGACAACGTCGACGTGTTCGCACAG
AGCCCCGGCGACGACGATGGCGCCGAGTACATAACGCAAGCGTACATCCA
CGGTTCCTTTGACGTCCTTGAGTTCTTCACGTGCTCGGTCGGTAGTGGTC
CGACCGCCAAAGAC
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