mRNA_P-littoralis_Contig994.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig994.14.1
Unique NamemRNA_P-littoralis_Contig994.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig994.14.1 vs. uniprot
Match: D8LPG6_ECTSI (EsV-1-140 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPG6_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 1.800e-79
Identity = 131/255 (51.37%), Postives = 167/255 (65.49%), Query Frame = 1 
Query:    1 PEGFVGGAMKRDERPRAYSDAYRGMTASSAKAWNRRIGNME*YRWNKNPLVVTFVLHHFLGRIQRMYRHSAAAIRNR-------ACPISLVLIVDIPVCERFRNLNTWFDKAVLAQHIHQTSDFSNPVNRVESREDDVLRIDPKLIDNFRNRKKIRACFAADEALVQTIENELEEIFSCMVKAGQQIPLRMELKIVFDSLMKDFQQCHRDLLRLDDARSGLCLKSLGDFADGDPNRPVRMSAKQKSVILHFLHSQ 744
            P  F    +K  + P AY+ AY+ MT +SAK  NRRIG  + YR  K+ LV T VL+HF   IQR +RH     R+         CPISL  I +IP   RFR+ N WF+K  LAQ++ +TSDF NPV RVE RE+DVL++DP LI  +R+RK++    A D ALVQ++ENELEE+F  MV+A Q+I  RME +IVFD L +DFQ+CH DL  LD  RS L LKSLGD  DGDP R V MS K++ ++ HFL +Q
Sbjct:   20 PRSFAHATIKCKKTP-AYASAYKAMTLASAKQANRRIGTADWYRLKKDALVATIVLNHFAEEIQRFFRHVVVTTRDSDDDARTAVCPISLKPITEIPCGHRFRHGNIWFNKDTLAQYMRKTSDFMNPVTRVELREEDVLKVDPGLIKQYRHRKELAERMAEDMALVQSVENELEEVFQDMVEAAQEIRTRMEFRIVFDHLAEDFQECHGDLTELDRDRSVLTLKSLGDLVDGDPTRRVHMSKKRERILRHFLKTQ 273
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BLAST of mRNA_P-littoralis_Contig994.14.1 vs. uniprot
Match: Q8QND9_ESV1K (EsV-1-140 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND9_ESV1K)

HSP 1 Score: 246 bits (628), Expect = 2.750e-78
Identity = 133/256 (51.95%), Postives = 169/256 (66.02%), Query Frame = 1 
Query:    1 PEGFVGGAMKRDERPRAYSDAYRGMTASSAKAWNRRIGNME*YRWNKNPLVVTFVLHHFLGRIQRMYR-------HSAAAIRNRA-CPISLVLIVDIPVCERFRNLNTWFDKAVLAQHIHQTSDFSNPVNRVESREDDVLRIDPKLIDNFRNRKKIRACFAADEALVQTIENELEEIFSCMVKAGQQIPLRMELKIVFDSLMKDFQQCHRDLLRLDDARSGLCLKSLGDFADGDPNRPVRMSAKQKSVILHFLHSQ 744
            P  F    +K  + P AY+ AY+ MT  SAK  NRRIG    YR  K+ LV T VL+HF   IQR +R       H      N A CPISL  I +IP   RFR+ N WF+K +LAQ++ +TSDF NPV RVE RE+DVLRIDP LI+ +++R++  A  A D A+VQ++ENELEE+F  MV+A Q+IP RME +IVFD+L +DFQQCH DL  LD  RS L +KSLGD  DGDP R V MS K++ ++ HFL +Q
Sbjct:   20 PGSFARATIKCKKTP-AYASAYKAMTLVSAKQANRRIGTANWYRLKKDALVATIVLNHFAQEIQRFFRRVVVVTTHDGDDDTNTAVCPISLKPIAEIPCGHRFRHGNIWFNKEILAQYMRKTSDFINPVTRVELREEDVLRIDPGLINQYKHRREHVARMAEDMAVVQSVENELEEVFQEMVEAAQEIPTRMEFRIVFDNLAEDFQQCHGDLTELDRDRSALTMKSLGDLVDGDPTRRVHMSKKRERILRHFLKTQ 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig994.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPG6_ECTSI1.800e-7951.37EsV-1-140 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QND9_ESV1K2.750e-7851.95EsV-1-140 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig994contigP-littoralis_Contig994:69236..69985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size750
Hectar predicted targeting categoryother localisation
Exons1
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791919.021391-UTR-P-littoralis_Contig994:69235..694301680791919.021391-UTR-P-littoralis_Contig994:69235..69430Pylaiella littoralis U1_48UTRP-littoralis_Contig994 69236..69430 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791919.0348687-CDS-P-littoralis_Contig994:69430..699851680791919.0348687-CDS-P-littoralis_Contig994:69430..69985Pylaiella littoralis U1_48CDSP-littoralis_Contig994 69431..69985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig994.14.1prot_P-littoralis_Contig994.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig994 69431..69985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig994.14.1

>prot_P-littoralis_Contig994.14.1 ID=prot_P-littoralis_Contig994.14.1|Name=mRNA_P-littoralis_Contig994.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
MYRHSAAAIRNRACPISLVLIVDIPVCERFRNLNTWFDKAVLAQHIHQTS
DFSNPVNRVESREDDVLRIDPKLIDNFRNRKKIRACFAADEALVQTIENE
LEEIFSCMVKAGQQIPLRMELKIVFDSLMKDFQQCHRDLLRLDDARSGLC
LKSLGDFADGDPNRPVRMSAKQKSVILHFLHSQT*
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mRNA from alignment at P-littoralis_Contig994:69236..69985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig994.14.1 ID=mRNA_P-littoralis_Contig994.14.1|Name=mRNA_P-littoralis_Contig994.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=750bp|location=Sequence derived from alignment at P-littoralis_Contig994:69236..69985+ (Pylaiella littoralis U1_48)
CCAGAAGGGTTCGTGGGCGGTGCGATGAAAAGAGACGAACGACCCAGAGC
GTATTCTGATGCCTACCGGGGCATGACCGCGTCCTCGGCGAAAGCGTGGA
ACAGGAGGATCGGCAATATGGAATAGTACCGGTGGAACAAGAACCCGCTC
GTGGTCACGTTCGTGCTCCACCATTTCCTCGGAAGAATTCAACGCATGTA
CAGGCACAGCGCCGCCGCGATTCGGAACAGGGCTTGCCCGATATCTCTCG
TTCTGATCGTAGATATACCCGTGTGTGAAAGATTCAGGAACTTAAACACC
TGGTTCGACAAGGCCGTTCTCGCGCAGCACATTCATCAGACGAGCGATTT
CTCAAACCCCGTCAACAGAGTGGAGTCTCGCGAGGACGACGTGCTTCGAA
TCGATCCGAAGCTCATCGACAATTTCAGGAACAGGAAGAAAATCAGAGCG
TGTTTCGCCGCGGACGAGGCGCTGGTGCAGACAATAGAGAACGAGCTCGA
AGAGATCTTTAGCTGCATGGTAAAAGCGGGCCAGCAGATACCCTTGAGGA
TGGAGTTAAAGATCGTTTTTGACAGCCTCATGAAAGACTTTCAGCAGTGC
CACCGCGACCTGCTGCGCCTAGACGACGCCCGGTCAGGCCTCTGCCTGAA
ATCTCTCGGGGATTTCGCGGACGGTGATCCCAACCGTCCCGTCCGCATGT
CTGCCAAGCAAAAGAGTGTTATTCTGCACTTCTTGCACAGCCAAACGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig994:69236..69985+

>mRNA_P-littoralis_Contig994.14.1 ID=mRNA_P-littoralis_Contig994.14.1|Name=mRNA_P-littoralis_Contig994.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig994:69236..69985+ (Pylaiella littoralis U1_48)
ATGTACAGGCACAGCGCCGCCGCGATTCGGAACAGGGCTTGCCCGATATC
TCTCGTTCTGATCGTAGATATACCCGTGTGTGAAAGATTCAGGAACTTAA
ACACCTGGTTCGACAAGGCCGTTCTCGCGCAGCACATTCATCAGACGAGC
GATTTCTCAAACCCCGTCAACAGAGTGGAGTCTCGCGAGGACGACGTGCT
TCGAATCGATCCGAAGCTCATCGACAATTTCAGGAACAGGAAGAAAATCA
GAGCGTGTTTCGCCGCGGACGAGGCGCTGGTGCAGACAATAGAGAACGAG
CTCGAAGAGATCTTTAGCTGCATGGTAAAAGCGGGCCAGCAGATACCCTT
GAGGATGGAGTTAAAGATCGTTTTTGACAGCCTCATGAAAGACTTTCAGC
AGTGCCACCGCGACCTGCTGCGCCTAGACGACGCCCGGTCAGGCCTCTGC
CTGAAATCTCTCGGGGATTTCGCGGACGGTGATCCCAACCGTCCCGTCCG
CATGTCTGCCAAGCAAAAGAGTGTTATTCTGCACTTCTTGCACAGCCAAA
CGTAA
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