mRNA_P-littoralis_Contig994.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig994.12.1
Unique NamemRNA_P-littoralis_Contig994.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig994.12.1 vs. uniprot
Match: D8LPG4_ECTSI (EsV-1-138 n=2 Tax=root TaxID=1 RepID=D8LPG4_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 2.360e-105
Identity = 182/358 (50.84%), Postives = 227/358 (63.41%), Query Frame = 1 
Query:   13 STCLFVHGKSGTGKSTTVETTARKFHFETIMAHADRSRTPARLEGVVREACVHGHRAAVVLDDIEMFLS*TTSLRVLSKVLRKLVGASSDG----SRRLFVIISNSRHKLFEPLQDMSTVVHFRPLAPGQIHTILTCLAHKVERHSHIPSEASLSSSLSSSGTITHGINQLQLLYAGNASNKLGGEHRXXXXXXXXXXXXXXXXXXXXXXXXXNGAGRNSRDCISYIWSGLYTDKLLVHLMDSSSLRTGLVMDRLLGLEKARLDIVGDHLLCEYPRRAASMQQLTGVADAMSASDVNRMRVDEDGLYEGEKVDVWSALDICYIFFVAGGVVAIKGQGRNDRSWSRKTHTRLARCPDFV 1074
            S CLF+HG+SGTGKST V   A+K  F+T+  +ADRSRTPARLEGVVREA VHG R  VVLDD E+FL  TTSLRVLSK+LR+L+          SR LF+IISNS+HK F  LQD+ST +HF  L   +I+ +   LA +V RHS++P  AS  SS+SSSGTIT G+ QLQLLYAG+                                    G   + RDCISY+WS +YTDK+L HL+D++    G V+DRL   E+ RLD VG  L  EY RR  S++QL  VA+++S SD NR+    D LY+GE  D WS  D+ ++ FVA GV+ IKGQ R D+SWSRKTHTRL +C   V
Sbjct:   64 SACLFLHGESGTGKSTAVTMIAQKHEFKTVTTYADRSRTPARLEGVVREAGVHGPRGVVVLDDFEIFLEETTSLRVLSKLLRQLLSTGDTSVRNRSRCLFIIISNSKHKQFGSLQDISTTIHFERLHQSEINKVFNRLAWRVRRHSYVPPMASYLSSISSSGTITQGVQQLQLLYAGDTPPDF-------------------LRRPGRKKQKIAGHTNSHRDCISYLWSDIYTDKILEHLVDNN-FHEGRVIDRLRSFERERLDKVGGQLHEEYARRMTSVEQLRDVAESISMSDTNRLEFHHDALYDGENSDSWSENDMAFVSFVAYGVLTIKGQRRRDQSWSRKTHTRLLKCEALV 401
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig994.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPG4_ECTSI2.360e-10550.84EsV-1-138 n=2 Tax=root TaxID=1 RepID=D8LPG4_ECTSI[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig994contigP-littoralis_Contig994:67159..68238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1080
Hectar predicted targeting categoryother localisation
Exons1
Cds size732
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791918.8784533-UTR-P-littoralis_Contig994:67158..675061680791918.8784533-UTR-P-littoralis_Contig994:67158..67506Pylaiella littoralis U1_48UTRP-littoralis_Contig994 67159..67506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791918.903946-CDS-P-littoralis_Contig994:67506..682381680791918.903946-CDS-P-littoralis_Contig994:67506..68238Pylaiella littoralis U1_48CDSP-littoralis_Contig994 67507..68238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig994.12.1prot_P-littoralis_Contig994.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig994 67507..68238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig994.12.1

>prot_P-littoralis_Contig994.12.1 ID=prot_P-littoralis_Contig994.12.1|Name=mRNA_P-littoralis_Contig994.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=244bp
MSTVVHFRPLAPGQIHTILTCLAHKVERHSHIPSEASLSSSLSSSGTITH
GINQLQLLYAGNASNKLGGEHRRKKQRLVAQDQESDKEEGGMEDDDDNGA
GRNSRDCISYIWSGLYTDKLLVHLMDSSSLRTGLVMDRLLGLEKARLDIV
GDHLLCEYPRRAASMQQLTGVADAMSASDVNRMRVDEDGLYEGEKVDVWS
ALDICYIFFVAGGVVAIKGQGRNDRSWSRKTHTRLARCPDFVF*
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mRNA from alignment at P-littoralis_Contig994:67159..68238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig994.12.1 ID=mRNA_P-littoralis_Contig994.12.1|Name=mRNA_P-littoralis_Contig994.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1080bp|location=Sequence derived from alignment at P-littoralis_Contig994:67159..68238+ (Pylaiella littoralis U1_48)
GACACGGGGGCGTCTACCTGCCTCTTCGTGCACGGAAAGTCCGGCACCGG
CAAGTCGACAACCGTGGAAACGACGGCGAGGAAGTTTCATTTTGAAACGA
TCATGGCGCACGCGGACAGGTCCAGGACGCCAGCCCGCCTCGAGGGCGTC
GTCAGAGAAGCGTGTGTGCACGGCCACCGAGCGGCCGTGGTGTTGGATGA
TATCGAGATGTTTCTCTCCTAAACCACTTCCCTCCGGGTATTGTCCAAGG
TCCTGCGCAAGCTCGTGGGCGCGAGCAGCGACGGATCGCGGCGCCTGTTC
GTCATCATCAGCAACTCCAGGCACAAGCTTTTTGAGCCCCTCCAGGACAT
GTCAACGGTGGTTCACTTCCGGCCACTGGCCCCAGGTCAAATCCACACGA
TACTTACCTGCCTGGCGCACAAGGTCGAGCGACACTCACACATACCTTCC
GAGGCGTCGCTCTCGTCGTCGCTGTCGAGCTCGGGAACGATCACACATGG
AATAAATCAACTACAGCTCCTCTACGCCGGCAACGCGTCGAACAAGCTTG
GAGGCGAGCATCGTCGCAAGAAACAGCGCCTTGTGGCACAAGACCAAGAA
TCGGACAAAGAGGAGGGCGGAATGGAAGACGACGACGACAACGGCGCCGG
GAGAAACAGTCGCGACTGCATCTCCTACATCTGGTCCGGCCTGTACACCG
ATAAGCTATTGGTGCACCTCATGGACAGCAGCAGCCTTCGGACCGGTCTC
GTGATGGACAGGCTTCTGGGGTTGGAGAAGGCGCGGCTGGACATCGTCGG
TGACCATTTGTTGTGCGAATACCCCCGGCGGGCGGCGTCGATGCAACAGC
TGACCGGCGTCGCGGACGCCATGAGCGCGTCCGATGTTAACCGTATGCGG
GTCGACGAGGACGGCCTCTATGAAGGAGAAAAAGTAGACGTGTGGTCGGC
CCTTGACATCTGCTACATCTTCTTCGTTGCCGGCGGCGTCGTCGCCATCA
AGGGCCAGGGGAGGAATGACCGGTCCTGGTCCCGGAAGACCCACACAAGG
CTCGCCAGGTGTCCGGACTTCGTGTTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig994:67159..68238+

>mRNA_P-littoralis_Contig994.12.1 ID=mRNA_P-littoralis_Contig994.12.1|Name=mRNA_P-littoralis_Contig994.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=732bp|location=Sequence derived from alignment at P-littoralis_Contig994:67159..68238+ (Pylaiella littoralis U1_48)
ATGTCAACGGTGGTTCACTTCCGGCCACTGGCCCCAGGTCAAATCCACAC
GATACTTACCTGCCTGGCGCACAAGGTCGAGCGACACTCACACATACCTT
CCGAGGCGTCGCTCTCGTCGTCGCTGTCGAGCTCGGGAACGATCACACAT
GGAATAAATCAACTACAGCTCCTCTACGCCGGCAACGCGTCGAACAAGCT
TGGAGGCGAGCATCGTCGCAAGAAACAGCGCCTTGTGGCACAAGACCAAG
AATCGGACAAAGAGGAGGGCGGAATGGAAGACGACGACGACAACGGCGCC
GGGAGAAACAGTCGCGACTGCATCTCCTACATCTGGTCCGGCCTGTACAC
CGATAAGCTATTGGTGCACCTCATGGACAGCAGCAGCCTTCGGACCGGTC
TCGTGATGGACAGGCTTCTGGGGTTGGAGAAGGCGCGGCTGGACATCGTC
GGTGACCATTTGTTGTGCGAATACCCCCGGCGGGCGGCGTCGATGCAACA
GCTGACCGGCGTCGCGGACGCCATGAGCGCGTCCGATGTTAACCGTATGC
GGGTCGACGAGGACGGCCTCTATGAAGGAGAAAAAGTAGACGTGTGGTCG
GCCCTTGACATCTGCTACATCTTCTTCGTTGCCGGCGGCGTCGTCGCCAT
CAAGGGCCAGGGGAGGAATGACCGGTCCTGGTCCCGGAAGACCCACACAA
GGCTCGCCAGGTGTCCGGACTTCGTGTTTTGA
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