mRNA_P-littoralis_Contig991.19.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig991.19.2
Unique NamemRNA_P-littoralis_Contig991.19.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig991.19.2 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.230e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:  151 DNVSYVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQCFARAMQMFPGKGMDRIPTEVVLALLRH 342
            DNVSYVLART+R  L   AA+ IG +G GNQC+RG CFARAM MF GKGM+ IP +VVLALLR+
Sbjct:  160 DNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
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BLAST of mRNA_P-littoralis_Contig991.19.2 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.670e-7
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:  130 KGEGGKYDNVSYVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQCFAR 270
            K    + DNV YVLART+RSNL   AA+ IG TG GNQC+RG   +R
Sbjct:  120 KARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRGMFCSR 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig991.19.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE3.230e-2068.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI2.670e-757.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig991contigP-littoralis_Contig991:81998..83137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size501
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791916.5961835-UTR-P-littoralis_Contig991:81997..821511680791916.5961835-UTR-P-littoralis_Contig991:81997..82151Pylaiella littoralis U1_48UTRP-littoralis_Contig991 81998..82151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791916.606661-CDS-P-littoralis_Contig991:82151..823841680791916.606661-CDS-P-littoralis_Contig991:82151..82384Pylaiella littoralis U1_48CDSP-littoralis_Contig991 82152..82384 -
1680791916.6173885-CDS-P-littoralis_Contig991:83025..831371680791916.6173885-CDS-P-littoralis_Contig991:83025..83137Pylaiella littoralis U1_48CDSP-littoralis_Contig991 83026..83137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig991.19.2prot_P-littoralis_Contig991.19.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig991 82152..83137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig991.19.2

>prot_P-littoralis_Contig991.19.2 ID=prot_P-littoralis_Contig991.19.2|Name=mRNA_P-littoralis_Contig991.19.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
ARCLSRGGTRNTPTGRQLAAINRASSCLNYYYYSRQPGRAGSPKGEGGKY
DNVSYVLARTIRSNLHQEAAKLIGCTGMGNQCKRGQCFARAMQMFPGKGM
DRIPTEVVLALLRH*
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mRNA from alignment at P-littoralis_Contig991:81998..83137-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig991.19.2 ID=mRNA_P-littoralis_Contig991.19.2|Name=mRNA_P-littoralis_Contig991.19.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1140bp|location=Sequence derived from alignment at P-littoralis_Contig991:81998..83137- (Pylaiella littoralis U1_48)
GCGAGGTGCCTCTCCCGAGGTGGGACAAGAAACACCCCAACCGGACGACA
ACTTGCGGCAATCAACAGGGCTTCCTCGTGTCTCAACTACTACTACTACA
GTAGACAACCAGGTGTGTGTGCATTATGTTTATGGAAGAGAGACCTCTTG
CGCCAGCGGTATGATATGACATGTTCGGAATGAAACATTTCAACCCAAAC
AACGGCAGCCGTAGGCAACGGCGGTAGTACACTTATGATATCACAAGAGA
CAACACGAGCTGAAGGCAACAGCAGCATCGGTATTTGAACTAGGCTCTCT
GCATTTCACGAGTCATCCTGCTATCATACGTACCCGCTTTAGATAGTTGA
AGAAAATCTGCTCACCGAAAGCCACATGTGTCACCACACCAAAAATGCAT
GCTGTACAGGGGTTGCTGGACATATAAACTGCACGAACAGCGGACGATCT
GTAGTAGTATCGAGCGGCATGCTTGATGATGTTGCCGATGCTCGTTGGTA
GTCTAGTACGAAGTATTTAAACATGATGCCATCAACGAAGCCATCGAAAT
TGACGCTGACATAAAATCACACAAAGATAGCAGTCAGTAGCACTCGAAAA
AATCGCTCGGGTGTGTTTGGGGCTCGTAGTTCCAAGAGGCTGTTGGAGTT
TATTTTATGTCTCGATGTTTCTTCGGCTACTGAACATGCTCAGTATGCTC
AGTGAATAAAACACCCCCCCACCCCCGCGTCCCCGAAACGCATGACCTGA
CAGGGCGTGCTGGATCGCCAAAAGGAGAGGGAGGAAAATACGACAACGTG
TCGTATGTCCTTGCTCGCACGATCCGCAGCAATTTGCACCAGGAGGCGGC
GAAATTGATCGGGTGTACGGGCATGGGTAACCAGTGCAAGCGTGGGCAGT
GCTTTGCACGAGCGATGCAGATGTTCCCTGGAAAAGGAATGGACCGAATA
CCCACTGAAGTGGTTCTAGCACTGTTGAGGCACTGATGATGGTTGCGAAT
TGCTGTCGGGGAAATAGCAACTGCTGTATTTCGTAGCCCACGAGCGGACG
GAGCGGCGAGAACTCGAAAACTGTTGTAATCAGGGACAGCACCGGCATGC
AGAGGGTGCTGAACACGTTGCGGATCAGATAAGTCGTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig991:81998..83137-

>mRNA_P-littoralis_Contig991.19.2 ID=mRNA_P-littoralis_Contig991.19.2|Name=mRNA_P-littoralis_Contig991.19.2|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig991:81998..83137- (Pylaiella littoralis U1_48)
GCGAGGTGCCTCTCCCGAGGTGGGACAAGAAACACCCCAACCGGACGACA
ACTTGCGGCAATCAACAGGGCTTCCTCGTGTCTCAACTACTACTACTACA
GTAGACAACCAGGGCGTGCTGGATCGCCAAAAGGAGAGGGAGGAAAATAC
GACAACGTGTCGTATGTCCTTGCTCGCACGATCCGCAGCAATTTGCACCA
GGAGGCGGCGAAATTGATCGGGTGTACGGGCATGGGTAACCAGTGCAAGC
GTGGGCAGTGCTTTGCACGAGCGATGCAGATGTTCCCTGGAAAAGGAATG
GACCGAATACCCACTGAAGTGGTTCTAGCACTGTTGAGGCACTGA
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