mRNA_P-littoralis_Contig99.94.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig99.94.2
Unique NamemRNA_P-littoralis_Contig99.94.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig99.94.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig99contigP-littoralis_Contig99:433092..436035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1397
Hectar predicted targeting categoryother localisation
Exons4
Cds size1023
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791909.431908-UTR-P-littoralis_Contig99:433091..4334651680791909.431908-UTR-P-littoralis_Contig99:433091..433465Pylaiella littoralis U1_48UTRP-littoralis_Contig99 433092..433465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791909.4507172-CDS-P-littoralis_Contig99:433465..4339101680791909.4507172-CDS-P-littoralis_Contig99:433465..433910Pylaiella littoralis U1_48CDSP-littoralis_Contig99 433466..433910 +
1680791909.4751472-CDS-P-littoralis_Contig99:434385..4344771680791909.4751472-CDS-P-littoralis_Contig99:434385..434477Pylaiella littoralis U1_48CDSP-littoralis_Contig99 434386..434477 +
1680791909.492731-CDS-P-littoralis_Contig99:434826..4349821680791909.492731-CDS-P-littoralis_Contig99:434826..434982Pylaiella littoralis U1_48CDSP-littoralis_Contig99 434827..434982 +
1680791909.5063553-CDS-P-littoralis_Contig99:435705..4360351680791909.5063553-CDS-P-littoralis_Contig99:435705..436035Pylaiella littoralis U1_48CDSP-littoralis_Contig99 435706..436035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig99.94.2prot_P-littoralis_Contig99.94.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig99 433466..436035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig99.94.2

>prot_P-littoralis_Contig99.94.2 ID=prot_P-littoralis_Contig99.94.2|Name=mRNA_P-littoralis_Contig99.94.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=341bp
MAGALTNFLWTTAKSILAPAPAVSTSPSSSDNDSSHDSSDDSLDDDESSD
ASSSSDDDEGGFSTPSPGDSSTTSSSHGHVAAESRPHKETPPPPDPPLNS
KPNPVGYNNHTAGEKEEQKYRQDVGDQQQQQQQQGRQQHGDLEILLGRGG
GRSVDGNGCRGGGSSNGGRKKRALDNTPELGHDDGTTRPDDGDDDDVGGD
KHLLPPVCLACAAQDAADDAAVQRGALEGCQRCRPIWITPEEYARDAQIS
IQGASGRVTSPAAAAVDGEDAQQQRYCDLHPRAVDLLLTEVSEKRKDKDK
DNSGGGGGGGGGGGPLLGGCCAAPTEIVGGLQRAEDANSDD
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mRNA from alignment at P-littoralis_Contig99:433092..436035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig99.94.2 ID=mRNA_P-littoralis_Contig99.94.2|Name=mRNA_P-littoralis_Contig99.94.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2944bp|location=Sequence derived from alignment at P-littoralis_Contig99:433092..436035+ (Pylaiella littoralis U1_48)
GGCGAAAGACTGCTGGCTTCGCAGATTGCAGACTTGCATGTTGTCAAGGG
ATCCACACACACGACGGGACCCACATTTTCTGCATTAACCTACCCCAGAA
GGTCGCAAGTAAGCGGCAACGCCCCGGGGCGCTCTTCACGGCCCGACCAT
AGGAGCTGAGCCGGCGAATTGCTGTGCGCGGGACTGTTGTTAAGCGGGGT
GCAGCGCCGAACGCCCACGTCGAGTTTCTCCTCTTGTTCCCTGTTCACGG
CTTGCACTCCTGTGTCTTTTGCGCTTCCGTGTTCTGCCTTGGAGGGGTAA
CGAGAGGAACGCACAGCATCCGCACCAGCTCAGCCCTCTACCGCAGTCGT
AGAGCCACCTCTGTGCTGTCAATCATGGCTGGTGCCCTCACGAACTTCCT
CTGGACCACCGCCAAGAGTATCCTTGCACCCGCCCCAGCCGTATCCACTT
CGCCCTCCTCCTCCGACAACGACTCCTCCCACGACTCCTCGGACGACTCC
TTGGACGACGACGAATCTTCGGACGCCTCCTCCTCCTCCGACGACGACGA
AGGAGGATTTTCCACACCGTCGCCCGGCGACAGCAGTACAACCAGCAGCA
GCCACGGCCATGTCGCTGCTGAATCGCGTCCACACAAGGAGACACCGCCG
CCGCCCGATCCTCCGCTCAATTCGAAACCGAATCCCGTTGGTTACAATAA
TCACACCGCGGGGGAGAAGGAGGAGCAGAAGTATCGGCAAGATGTGGGGG
ATCAGCAGCAGCAGCAGCAGCAGCAGGGACGGCAGCAACATGGTGATTTG
GAGATCCTGCTTGGGAGAGGTGCATTCCGTATTGGATGCTGTGCAACAGT
AGTGGGAGCGTCTCGCCTTGTCTTTGCACCGTCCATTTTCGTATCACCCT
TCCCCCGTGGCTGATTTTCCATGCGTAGACATGTTATCAGCAAGAAGAAA
AGCGTTGAAAGCATTTACGTATGGTTTGTCATCGACGACAGCTTTTTCAG
ATAAAGCGATGTTTTTTTTTTCGCGCGGTGGTGGGCTACTTCGTACTTCG
CAGTACAAAAGTTCGGCGCCCTCTTCCGTGCGGGGGACAGTCACACTCAA
TCTTTAACGCTGTCAGTAGGGGGGCGCTGGATTCCGTAGCATACAGCAGT
ACGTAGATCGCTATGCAGTTTGGCCCTCTGATCTCTCTGTCTCTTTGTCC
CGCTGCCTCTGTCTATCTCCCCTCTCCCTCCCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCCTGTCTGTGGCCATTAACCACGGCGCAGGCGGAG
GGAGGTCCGTGGATGGGAATGGGTGTCGCGGCGGCGGCAGCAGCAATGGA
GGCCGCAAAAAAAGGGCTCTCGACAACACACCGGAGGTAAGCGAGGAGTG
AGCTCATTTCTTGTGTTGAGAGCACGGTCAGTGAGAACCTTTGCGAAAAG
GCATTGTTGTAGCTCGTTTATATCTGGTTTCTGCTGCTGCTGCTGCTGTA
TGTAGCTGATGGTGATGGTGATGATGATGATGATGATGATGTCTTGTCAA
TTTTTTGGAGACCATCACAGCTTTTTTTTGTCGTTTGACCGACGTTTTTG
CAAAAAATGTCCTTGGAGGGCATCTATCTTCTTGCAAGACGCCCGCCACC
TGTTGCGGCTTTCCGGCAGGGGGGCTGAGAAATAAACACGCCCACGATTT
TTTTTGCGTTTCGGATTTGTTCCCGTCGGTAACAGCTGGGTCACGATGAC
GGGACGACCCGTCCTGACGACGGCGATGACGACGACGTCGGCGGAGACAA
GCACCTTCTGCCACCGGTCTGCCTGGCGTGCGCAGCCCAGGACGCGGCCG
ACGACGCTGCTGTCCAGAGGGGTGCCCTAGAAGGGTGTCAGGTGAGCAAA
CAGGGCAAAAGAGGCGCGGTGCGATAACCTCGTTTCGGGGAGGGTGCGGT
ATTCCTCCAGCTTTTACGAGGGCATCCTGCGTTCGCTTAGACTGCTTGTA
CTGTCTGCTGTCTACTCCCTTGCAGCACGCCATGTTTGCATGCAGCGGCC
CAAAATTGTACCGCACAGGGACATCTGCTGGGTGCGATGATGCGAAGCTG
CCATTTTCCGCGTGTGTATCCCCGATTCACCGACAGATTCGATGCGAATG
TAGCTGGCTCACCGGGCTAATTTATAAGCGAAAATCATCGGGAGGTTTGA
GATTTGGCGGAGATTGAACTTTCAATGTATCCTACGGCTGAAAAGGCTCC
TAAAAAAAACGCTTTTGCGCAAATCCCTGACTCTTATGTTCCACTCGTAG
TGATGATTTTTTAGCGAAACGCCGTTCCTGTCCAAACCCCCTTTTTTGTA
TACCGAAGTTAGTGTGGCCTTAAAAACAGCAGTATGGGTTTTTGTTTCAT
GTTTAGCATATCGCGGTGTTGCTCAGTCGGGGCAAACGCTTGTGTGGCGC
AGACAACACTCATACCCCCCCGGATTGCTACTCATAACCCCCCCCCCCCC
TGCCTGCCCCCCGCTCTATCCATGTAACACACGGCGTACCCCCCCTTCCC
ATCCCCCTCCCCGTTCGCCCGCCCTAACCATGCACGCCGTTGAAACCGGC
TCGTGCGCCCACAGAGGTGCCGGCCGATATGGATTACCCCAGAAGAGTAC
GCACGGGACGCGCAAATTTCGATCCAAGGGGCAAGCGGCAGAGTGACGTC
GCCTGCTGCTGCTGCCGTCGACGGCGAAGATGCGCAGCAGCAGCGCTACT
GTGACCTCCACCCGAGGGCGGTAGACCTTTTGCTCACGGAAGTATCGGAG
AAGCGCAAGGACAAGGACAAGGACAACAGCGGCGGCGGCGGTGGCGGCGG
CGGTGGCGGCGGACCGCTCCTGGGGGGTTGTTGTGCTGCTCCGACAGAGA
TCGTAGGCGGCCTTCAGCGAGCGGAGGATGCGAATTCAGACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig99:433092..436035+

>mRNA_P-littoralis_Contig99.94.2 ID=mRNA_P-littoralis_Contig99.94.2|Name=mRNA_P-littoralis_Contig99.94.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1023bp|location=Sequence derived from alignment at P-littoralis_Contig99:433092..436035+ (Pylaiella littoralis U1_48)
ATGGCTGGTGCCCTCACGAACTTCCTCTGGACCACCGCCAAGAGTATCCT
TGCACCCGCCCCAGCCGTATCCACTTCGCCCTCCTCCTCCGACAACGACT
CCTCCCACGACTCCTCGGACGACTCCTTGGACGACGACGAATCTTCGGAC
GCCTCCTCCTCCTCCGACGACGACGAAGGAGGATTTTCCACACCGTCGCC
CGGCGACAGCAGTACAACCAGCAGCAGCCACGGCCATGTCGCTGCTGAAT
CGCGTCCACACAAGGAGACACCGCCGCCGCCCGATCCTCCGCTCAATTCG
AAACCGAATCCCGTTGGTTACAATAATCACACCGCGGGGGAGAAGGAGGA
GCAGAAGTATCGGCAAGATGTGGGGGATCAGCAGCAGCAGCAGCAGCAGC
AGGGACGGCAGCAACATGGTGATTTGGAGATCCTGCTTGGGAGAGGCGGA
GGGAGGTCCGTGGATGGGAATGGGTGTCGCGGCGGCGGCAGCAGCAATGG
AGGCCGCAAAAAAAGGGCTCTCGACAACACACCGGAGCTGGGTCACGATG
ACGGGACGACCCGTCCTGACGACGGCGATGACGACGACGTCGGCGGAGAC
AAGCACCTTCTGCCACCGGTCTGCCTGGCGTGCGCAGCCCAGGACGCGGC
CGACGACGCTGCTGTCCAGAGGGGTGCCCTAGAAGGGTGTCAGAGGTGCC
GGCCGATATGGATTACCCCAGAAGAGTACGCACGGGACGCGCAAATTTCG
ATCCAAGGGGCAAGCGGCAGAGTGACGTCGCCTGCTGCTGCTGCCGTCGA
CGGCGAAGATGCGCAGCAGCAGCGCTACTGTGACCTCCACCCGAGGGCGG
TAGACCTTTTGCTCACGGAAGTATCGGAGAAGCGCAAGGACAAGGACAAG
GACAACAGCGGCGGCGGCGGTGGCGGCGGCGGTGGCGGCGGACCGCTCCT
GGGGGGTTGTTGTGCTGCTCCGACAGAGATCGTAGGCGGCCTTCAGCGAG
CGGAGGATGCGAATTCAGACGAC
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