mRNA_P-littoralis_Contig99.91.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig99.91.2
Unique NamemRNA_P-littoralis_Contig99.91.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig99.91.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig99contigP-littoralis_Contig99:378651..380007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1307
Hectar predicted targeting categoryother localisation
Exons2
Cds size933
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791909.3644354-UTR-P-littoralis_Contig99:378650..3788561680791909.3644354-UTR-P-littoralis_Contig99:378650..378856Pylaiella littoralis U1_48UTRP-littoralis_Contig99 378651..378856 +
1680791909.3990538-UTR-P-littoralis_Contig99:379839..3800071680791909.3990538-UTR-P-littoralis_Contig99:379839..380007Pylaiella littoralis U1_48UTRP-littoralis_Contig99 379840..380007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791909.37884-CDS-P-littoralis_Contig99:378856..3789761680791909.37884-CDS-P-littoralis_Contig99:378856..378976Pylaiella littoralis U1_48CDSP-littoralis_Contig99 378857..378976 +
1680791909.3893156-CDS-P-littoralis_Contig99:379026..3798391680791909.3893156-CDS-P-littoralis_Contig99:379026..379839Pylaiella littoralis U1_48CDSP-littoralis_Contig99 379027..379839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig99.91.2prot_P-littoralis_Contig99.91.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig99 378857..379839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig99.91.2

>prot_P-littoralis_Contig99.91.2 ID=prot_P-littoralis_Contig99.91.2|Name=mRNA_P-littoralis_Contig99.91.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=311bp
MGRRNVSLFRFVFFCTEIRPILSDFWIGVEGPGRREWEKITSAVRASFCA
WKHSKAEAEAPVRAGFERCGNGGGRGSGVRPFLSWDIFTTYEARRHAGWG
GRRAPNRAVVVVVVVLNGGKGRGGGLRFPLFDLWRSRALHGVKKNLLPNI
TRCVSIPGARKNKGGPFLRICRVLFFFFSPLRLLLLLPVFCTRKHPIFVL
RSTVFCVLVVSCLPLLYAKFVCLFSPDKLALVTHAEMKALVPFPFLGSIR
LLGFEKAMPKLKQRGRGRVGLLCRFPPTKSSEHRLHIWRLGIDGSYILSA
QENGVSFVYH*
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mRNA from alignment at P-littoralis_Contig99:378651..380007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig99.91.2 ID=mRNA_P-littoralis_Contig99.91.2|Name=mRNA_P-littoralis_Contig99.91.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1357bp|location=Sequence derived from alignment at P-littoralis_Contig99:378651..380007+ (Pylaiella littoralis U1_48)
CTGGTAAATGGTGTGGAAGGAGGCGTTCAGGGGGGGGGGAGACAGGCGTC
CGCGTGCTCGAAGAGGGGGCTGGGCCGGGCCGTGAACGAAGACAGCGGGG
AGGCAGGAGGGGGAGACAACCCTCCCTTGCCGTTCCGCGTGTAAGGGCGG
TGTGGGAAAAAGAGGGGATTTTGTTCGGGAGAGGGGCGAAAGAGACGGTG
GATTGGATGGGAAGACGAAATGTGTCATTATTTCGTTTTGTTTTCTTTTG
TACAGAGATCCGACCGATCTTATCGGACTTTTGGATTGGAGTCGAAGGAC
CGGGGCGGAGGGAGTGGGAGAAGATTCCCCCCCCCCTCCAACCCAAACCC
CCTCCCACACACACACACGCGCACACACGAGTGCGGTGCGAGCTTCTTTC
TGTGCTTGGAAGCATTCGAAAGCAGAAGCAGAGGCGCCCGTGCGTGCGGG
TTTTGAAAGGTGCGGGAACGGGGGCGGGAGGGGTTCTGGTGTTCGCCCGT
TTCTCTCTTGGGACATCTTTACCACCTACGAAGCGCGCAGACACGCAGGT
TGGGGAGGAAGGCGTGCTCCGAACAGGGCGGTGGTGGTGGTGGTGGTGGT
GTTGAACGGAGGGAAAGGACGGGGAGGGGGATTGAGATTTCCCCTCTTCG
ACCTGTGGCGGTCACGAGCGCTACACGGCGTAAAAAAAAATCTCCTTCCA
AATATTACGCGATGCGTGAGCATCCCTGGTGCGAGGAAGAACAAGGGTGG
TCCATTTTTGAGGATATGCCGTGTCCTTTTTTTTTTTTTCTCGCCGCTGC
GTCTGCTACTTCTGCTGCCTGTATTTTGTACTCGAAAGCACCCTATTTTT
GTACTTCGAAGTACTGTTTTTTGTGTCTTGGTTGTGTCCTGTCTGCCTCT
CTTGTATGCTAAGTTTGTGTGTTTGTTTTCCCCGGATAAACTGGCGCTTG
TGACCCATGCGGAGATGAAAGCTCTTGTCCCTTTTCCGTTCCTCGGCAGC
ATACGCTTGTTGGGCTTCGAGAAAGCGATGCCAAAATTAAAGCAGCGGGG
AAGAGGGCGTGTCGGACTCCTTTGTCGCTTTCCTCCTACTAAATCTTCAG
AGCATCGTCTCCATATTTGGAGACTGGGAATTGACGGTTCTTATATCCTG
TCTGCGCAGGAGAACGGCGTTTCATTTGTTTACCACTAGATTGACCTATT
TCCTACCGCGACTAGATTGAAATTTCTCCGACGCGATTGCTTGCTTGCTT
GCTTGCTCGGTTGTTGGATTGATTGATTGGTTGATTGGGCGGTTGGTTGG
TTGTTGGTTGCCCCGCTTATCCGAAAGCTCTTTTTCGTGTAGGCCGGAAG
GGGAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig99:378651..380007+

>mRNA_P-littoralis_Contig99.91.2 ID=mRNA_P-littoralis_Contig99.91.2|Name=mRNA_P-littoralis_Contig99.91.2|organism=Pylaiella littoralis U1_48|type=CDS|length=933bp|location=Sequence derived from alignment at P-littoralis_Contig99:378651..380007+ (Pylaiella littoralis U1_48)
ATGGGAAGACGAAATGTGTCATTATTTCGTTTTGTTTTCTTTTGTACAGA
GATCCGACCGATCTTATCGGACTTTTGGATTGGAGTCGAAGGACCGGGGC
GGAGGGAGTGGGAGAAGATTACGAGTGCGGTGCGAGCTTCTTTCTGTGCT
TGGAAGCATTCGAAAGCAGAAGCAGAGGCGCCCGTGCGTGCGGGTTTTGA
AAGGTGCGGGAACGGGGGCGGGAGGGGTTCTGGTGTTCGCCCGTTTCTCT
CTTGGGACATCTTTACCACCTACGAAGCGCGCAGACACGCAGGTTGGGGA
GGAAGGCGTGCTCCGAACAGGGCGGTGGTGGTGGTGGTGGTGGTGTTGAA
CGGAGGGAAAGGACGGGGAGGGGGATTGAGATTTCCCCTCTTCGACCTGT
GGCGGTCACGAGCGCTACACGGCGTAAAAAAAAATCTCCTTCCAAATATT
ACGCGATGCGTGAGCATCCCTGGTGCGAGGAAGAACAAGGGTGGTCCATT
TTTGAGGATATGCCGTGTCCTTTTTTTTTTTTTCTCGCCGCTGCGTCTGC
TACTTCTGCTGCCTGTATTTTGTACTCGAAAGCACCCTATTTTTGTACTT
CGAAGTACTGTTTTTTGTGTCTTGGTTGTGTCCTGTCTGCCTCTCTTGTA
TGCTAAGTTTGTGTGTTTGTTTTCCCCGGATAAACTGGCGCTTGTGACCC
ATGCGGAGATGAAAGCTCTTGTCCCTTTTCCGTTCCTCGGCAGCATACGC
TTGTTGGGCTTCGAGAAAGCGATGCCAAAATTAAAGCAGCGGGGAAGAGG
GCGTGTCGGACTCCTTTGTCGCTTTCCTCCTACTAAATCTTCAGAGCATC
GTCTCCATATTTGGAGACTGGGAATTGACGGTTCTTATATCCTGTCTGCG
CAGGAGAACGGCGTTTCATTTGTTTACCACTAG
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