mRNA_P-littoralis_Contig99.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig99.53.1
Unique NamemRNA_P-littoralis_Contig99.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig99.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig99contigP-littoralis_Contig99:231788..233678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size332
Hectar predicted targeting categoryother localisation
Exons3
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791909.1215098-CDS-P-littoralis_Contig99:231787..2319731680791909.1215098-CDS-P-littoralis_Contig99:231787..231973Pylaiella littoralis U1_48CDSP-littoralis_Contig99 231788..231973 -
1680791909.135365-CDS-P-littoralis_Contig99:232500..2325761680791909.135365-CDS-P-littoralis_Contig99:232500..232576Pylaiella littoralis U1_48CDSP-littoralis_Contig99 232501..232576 -
1680791909.1479797-CDS-P-littoralis_Contig99:233610..2336781680791909.1479797-CDS-P-littoralis_Contig99:233610..233678Pylaiella littoralis U1_48CDSP-littoralis_Contig99 233611..233678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig99.53.1prot_P-littoralis_Contig99.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig99 231788..233678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig99.53.1

>prot_P-littoralis_Contig99.53.1 ID=prot_P-littoralis_Contig99.53.1|Name=mRNA_P-littoralis_Contig99.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
RIGRSSGKRSPLSRQVDVGPTTRRLPMASDVMANPSLGQQQRTTEEEEED
FEDDNDDALAAAGTAHTRRRHPPAFHRRRSRSWRRNGNPVAATATSAAAA
AAAAAAPGGE
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mRNA from alignment at P-littoralis_Contig99:231788..233678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig99.53.1 ID=mRNA_P-littoralis_Contig99.53.1|Name=mRNA_P-littoralis_Contig99.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1891bp|location=Sequence derived from alignment at P-littoralis_Contig99:231788..233678- (Pylaiella littoralis U1_48)
AGGATCGGCAGGAGCAGCGGGAAAAGGAGCCCACTCTCCAGGCAGGTGGA
CGTGGGGCCAACGACGCGGTAAGTGCTAGTATTTGCGGTATGTCGCAAAT
GAACTTGAACACAACAGGCATTATGTTAGACTAATAGCTGTTCCGGGTAC
ATAAAGTAACAGCAGCATCAGGAGTGCACTGTAGTGTGTTTTGTTGTTAT
TGTTGATTCTAACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGATGT
CTTGCCACGAGGTTTGCCTGTTCACGCTTGCTCTCCTCAGTCGCACTCAT
GCCTCCTGCTACTGGCACCACCGTACCCAGTTGTTTCTGCCCCACATCTT
TGGCAGCAGCTACACCACCGCTCCGAGATTTCCGCCCTACGGGTGTTCCA
CTCCGGCCACCCCGTAGCTTGGCGTTGGGCTGCTTCTTCTGCCGTGCAAC
TCCAACCCCACTACCCCGCTGCCCTTGTGCCCCCCCGTACTCCTCCTCTC
GTTTATCCCCGCCATCCGTTCTCCCTCTTTCGGCCAAGGCCTGCCCCTCA
GCCGCGTCCCTCTCCCTTTTCAGTCGACGTGTCTCTGAGAAGTCTCCCTC
TTTCTTGAGCCACTCGTCCGTGAACCGCCGCGCACCCTCGTCGATCGTGT
GTGTTGTAGCGCAGTAGGCGCGCCAAATCTCTCAACAAGAATCCGGAACT
CGGGCTTCGGAAACGTTTTCTATGAATCGATCTGTCCATCGTTGCTAGTT
GCCTCGTAAGTTTGTGTATCGTGTGGCATATATCGCTGAGACTGAGGGTC
TGTCTTGACCAGTGACACCCCGCTACACACCCAAAAATCGAAAATCGAAC
ATCGAAGATCGATAACGGAAAATCGAAAATCGAAAAGAAAACGCCAACGT
CTCTGGTTGGCCAACGTGTCGTCCATGGCCCCCTCTCAGTCTCTCTGCCT
CGCTCTTTTCCCCGTTTCAATTAATGCACAACAGCAGCTTATGTATACAC
TTGCCTCGCTAAGTTCGAAGTAAATATTTATCCCTCCGCTGTCATCCTAT
CTGTCTCCCCCTCTTTACACACGGTGTGTGGCGATGGCGGCGTGTGTCGT
AGGAGGTTGCCGATGGCGTCGGATGTGATGGCCAACCCTAGCCTCGGGCA
GCAGCAGCGAACGACGGAGGAGGAGGAGGTGAGCTGAATCGTATGATGCT
CTACAGGGAGGGTATCCTGTGCTCGATGCAGTAGTGCGTGGGACGTAATG
TGCTTTGGCTTCAGGACAGTGTCCCGCTCTATAAATGGGATTAATGTTTT
GGATGAAAGATGCATGGATTAATGTGCACTTGTTTTCAAATGGGGTGTGG
GGTAAACGTGATGCATCCATAGCGTCAGTGTGGTAGGAATGTATGCTTGA
TTGTGTGTTGTATGGGATGAATGAGTACGTACTGGATTTTAGAGTTCTGT
AGGGTATGAGATGCATACACGTATTCGTGGCGTATGTGTGGTAGGAATAT
GTGCTTGATTTTTGTTTTGTATAGGCCGAATGAAGTTGATTGGTATTAGT
ATGTCGGATGGAGTCGGGATGGGGTTCCTTTGCTTTTGTGTACCTCGCGA
TGAAAGAGCCCTTGCTGTGTAGGTGTGTAAGTGTATGATACACGCGAGCA
ACAAATACAACACGCTTTTGCTTAACCAAAAAAACATATGTGAACGATTA
TTTAGGAGGATTTTGAAGACGACAACGATGACGCATTAGCCGCCGCTGGC
ACCGCCCACACCCGTCGACGACACCCGCCTGCGTTTCACCGGCGCCGCAG
CCGCTCCTGGCGCAGAAACGGTAACCCTGTCGCGGCGACCGCCACCAGTG
CCGCTGCCGCCGCCGCCGCTGCCGCTGCCCCCGGCGGCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig99:231788..233678-

>mRNA_P-littoralis_Contig99.53.1 ID=mRNA_P-littoralis_Contig99.53.1|Name=mRNA_P-littoralis_Contig99.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig99:231788..233678- (Pylaiella littoralis U1_48)
AGGATCGGCAGGAGCAGCGGGAAAAGGAGCCCACTCTCCAGGCAGGTGGA
CGTGGGGCCAACGACGCGGAGGTTGCCGATGGCGTCGGATGTGATGGCCA
ACCCTAGCCTCGGGCAGCAGCAGCGAACGACGGAGGAGGAGGAGGAGGAT
TTTGAAGACGACAACGATGACGCATTAGCCGCCGCTGGCACCGCCCACAC
CCGTCGACGACACCCGCCTGCGTTTCACCGGCGCCGCAGCCGCTCCTGGC
GCAGAAACGGTAACCCTGTCGCGGCGACCGCCACCAGTGCCGCTGCCGCC
GCCGCCGCTGCCGCTGCCCCCGGCGGCGAG
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