mRNA_P-littoralis_Contig99.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig99.29.1
Unique NamemRNA_P-littoralis_Contig99.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig99.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig99contigP-littoralis_Contig99:107621..108965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size334
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791909.0330203-CDS-P-littoralis_Contig99:107620..1077011680791909.0330203-CDS-P-littoralis_Contig99:107620..107701Pylaiella littoralis U1_48CDSP-littoralis_Contig99 107621..107701 -
1680791909.0435364-CDS-P-littoralis_Contig99:108713..1089651680791909.0435364-CDS-P-littoralis_Contig99:108713..108965Pylaiella littoralis U1_48CDSP-littoralis_Contig99 108714..108965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig99.29.1prot_P-littoralis_Contig99.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig99 107621..108965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig99.29.1

>prot_P-littoralis_Contig99.29.1 ID=prot_P-littoralis_Contig99.29.1|Name=mRNA_P-littoralis_Contig99.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
GSAAEQVIGEEGEVAVETCSAVSTTARPQSSTARDGVHPRFQPGGAIESY
ILEKFRQADEEGTSPPKHVMQMVTGSTHGPEIDQLSQRLSDVEQALAARS
TPTTGQTGGQA
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mRNA from alignment at P-littoralis_Contig99:107621..108965-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig99.29.1 ID=mRNA_P-littoralis_Contig99.29.1|Name=mRNA_P-littoralis_Contig99.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1345bp|location=Sequence derived from alignment at P-littoralis_Contig99:107621..108965- (Pylaiella littoralis U1_48)
GGGTCCGCTGCCGAACAGGTTATTGGCGAAGAAGGTGAAGTAGCCGTAGA
GACGTGTAGCGCCGTCTCGACGACCGCTCGCCCTCAATCGTCGACAGCTC
GCGATGGCGTGCACCCGCGCTTCCAACCTGGTGGAGCAATCGAGAGCTAC
ATTCTGGAAAAGTTCCGGCAAGCTGATGAGGAGGGGACCTCACCGCCGAA
ACATGTGATGCAAATGGTGACTGGCTCCACTCATGGGCCGGAAATCGATC
AGGTGAACCCGAGAAACCTTGCATCTAATCTAGCAGCCGAACCTTCCGAA
GTACAAGTAGCCCAACCTCCATCCTCCTCCCCCCGCTCAACAAGAGCAAA
CCAGGCCAATGATAGCGCCCACCTCGCACACGATGCAACCCACTCTGCCC
CAACAACAGCAGACTTCACCACAATCCATGCATCAACAACCCAACTTGTC
ACAGCAGCAATCAATCGGACAAACTACTCCCGTAAACATTGCTCCGATGC
AGACCGTGCACTCTCAAGTTGGCCAATCTCAGCATGGATACCCTCACCCC
GCGCACCCAGACCGCTTCACACTGAAAACGATTGACCTCCCAGCATCTCT
CAAGCTCGAAGGAATAGCTTCAGAAGATGTACCTGAGTTGATGGCACTAT
ACCGCGCCCACATTCGCTTGCTCTCACCCGACACGACTTCGGATTCTACG
ATTGATCACCGCGCTATCAAACACCTAGCGCTATTCGTACGAGGAGCAGC
AGCCCAAAGTTTGAGCTTAATACTGAGTTCGAATCTTGAGTGGAGACCAG
AATCCACTCTTGCAGCGATGCGTGCTCGAGGCGAACACATAATCGTTTCC
CCTCCACAGACTTGGCATGACTGGGTTACAGCATTTACGACTCTGTTCGC
TCCGGCGAACCGCATCTCTCTCCTCGCTCGCGATGTCATGACTCTACAAG
CCAAGCCGAACGAATCGGTTGACATGTACGGTCTCCGAGTATCACAAGCA
TATTCACGACTGCTTGCTGAAGCTCAAAGGACCACGCCCGTTGGAGTTAC
TGCGCACGAACATGCGTTCAACCAAGCGTTGATAGCATCTTTCGAAAACG
GTCTCCAGCCCGCGTTGCGTGTAGAAATGATAAGAGAGGATGCATCCCAA
TCTTTCATGGCTTCCAAAGCTCGGGCACGAAAACATGAAGCAAACCAGCT
GCGATCACCATCTCAAATTCCAACGGCTATCTCCGCCCTGCACGCTGATC
CCCGTGACGCCCAGCTGAGCCAGCGCTTGTCAGACGTCGAACAAGCACTC
GCGGCTCGTTCGACTCCTACCACCGGCCAAACCGGCGGACAAGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig99:107621..108965-

>mRNA_P-littoralis_Contig99.29.1 ID=mRNA_P-littoralis_Contig99.29.1|Name=mRNA_P-littoralis_Contig99.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig99:107621..108965- (Pylaiella littoralis U1_48)
GGGTCCGCTGCCGAACAGGTTATTGGCGAAGAAGGTGAAGTAGCCGTAGA
GACGTGTAGCGCCGTCTCGACGACCGCTCGCCCTCAATCGTCGACAGCTC
GCGATGGCGTGCACCCGCGCTTCCAACCTGGTGGAGCAATCGAGAGCTAC
ATTCTGGAAAAGTTCCGGCAAGCTGATGAGGAGGGGACCTCACCGCCGAA
ACATGTGATGCAAATGGTGACTGGCTCCACTCATGGGCCGGAAATCGATC
AGCTGAGCCAGCGCTTGTCAGACGTCGAACAAGCACTCGCGGCTCGTTCG
ACTCCTACCACCGGCCAAACCGGCGGACAAGCT
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