mRNA_P-littoralis_Contig99.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig99.19.1
Unique NamemRNA_P-littoralis_Contig99.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig99.19.1 vs. uniprot
Match: D7G7X8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X8_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.630e-14
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 QVTVDAFGGIVGAEHCEPSNIYISATVDQGGNMINAFRAMGVPTLICSGHRLNSAVQWATGIGGSFKSDGSGTCKNRLGHELVRKATAMVG 273
            Q+T   F  IV A    PS++Y++ATVDQG N++NA +++G+PT+ C GHR++S+V W  G+ GS       T KN+ G  LV +  A  G
Sbjct:   82 QLTTGVFQSIVPA--VVPSDVYVAATVDQGLNVVNACKSLGIPTIPCLGHRIHSSVMWGIGVSGSVA-----TQKNKKGRVLVGRCAACAG 165
[Close]
BLAST of mRNA_P-littoralis_Contig99.19.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.180e-12
Identity = 36/91 (39.56%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 QVTVDAFGGIVGAEHCEPSNIYISATVDQGGNMINAFRAMGVPTLICSGHRLNSAVQWATGIGGSFKSDGSGTCKNRLGHELVRKATAMVG 273
            ++T + F   +G E  EP +++++ TVDQGGN++NA +A+GVP + C+ HR+N+AV WA GI G+ +       +N++  +L++K  A+VG
Sbjct:  340 ELTREYFADFMG-EDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR-------RNKVMGDLMKKLAALVG 422
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig99.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7X8_ECTSI2.630e-1442.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRT6_9PHAE1.180e-1239.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig99contigP-littoralis_Contig99:90831..91325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size477
Hectar predicted targeting categoryother localisation
Exons2
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791910.2468586-CDS-P-littoralis_Contig99:90832..910311680791910.2468586-CDS-P-littoralis_Contig99:90832..91031Pylaiella littoralis U1_48CDSP-littoralis_Contig99 90833..91031 -
1680791910.26524-CDS-P-littoralis_Contig99:91050..913251680791910.26524-CDS-P-littoralis_Contig99:91050..91325Pylaiella littoralis U1_48CDSP-littoralis_Contig99 91051..91325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig99.19.1prot_P-littoralis_Contig99.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig99 90833..91325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig99.19.1

>prot_P-littoralis_Contig99.19.1 ID=prot_P-littoralis_Contig99.19.1|Name=mRNA_P-littoralis_Contig99.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=158bp
QVTVDAFGGIVGAEHCEPSNIYISATVDQGGNMINAFRAMGVPTLICSGH
RLNSAVQWATGIGGSFKSDGSGTCKNRLGHELVRKATAMVGQTTTSSRKC
KKSLKRCASSWSSSVGTTQGERCARMMCAGCIRDLFCVFVSSRTTERSRQ
APPPAKYA
back to top

mRNA from alignment at P-littoralis_Contig99:90831..91325-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig99.19.1 ID=mRNA_P-littoralis_Contig99.19.1|Name=mRNA_P-littoralis_Contig99.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig99:90831..91325- (Pylaiella littoralis U1_48)
CAGGTTACCGTTGACGCTTTTGGCGGTATCGTAGGAGCCGAGCACTGCGA
GCCATCAAACATCTACATCTCTGCCACGGTCGACCAAGGGGGCAACATGA
TCAACGCGTTCCGGGCCATGGGTGTTCCCACGTTGATCTGTTCTGGGCAC
CGGCTGAACTCGGCGGTGCAGTGGGCAACGGGCATCGGCGGGTCTTTCAA
ATCGGACGGCAGCGGGACGTGCAAGAACCGTCTGGGCCATGAACTTGTGA
GGAAGGCCACCGCCATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAAC
GACGAGTTCAAGAAAGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTT
GGAGCTCATCCGTCGGAACGACACAAGGTGAGAGGTGTGCGCGAATGATG
TGCGCAGGTTGTATTCGGGATTTATTTTGTGTGTTCGTGTCGTCTCGGAC
AACAGAAAGGTCGAGGCAGGCGCCGCCGCCCGCCAAGTATGCAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig99:90831..91325-

>mRNA_P-littoralis_Contig99.19.1 ID=mRNA_P-littoralis_Contig99.19.1|Name=mRNA_P-littoralis_Contig99.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=474bp|location=Sequence derived from alignment at P-littoralis_Contig99:90831..91325- (Pylaiella littoralis U1_48)
CAGGTTACCGTTGACGCTTTTGGCGGTATCGTAGGAGCCGAGCACTGCGA
GCCATCAAACATCTACATCTCTGCCACGGTCGACCAAGGGGGCAACATGA
TCAACGCGTTCCGGGCCATGGGTGTTCCCACGTTGATCTGTTCTGGGCAC
CGGCTGAACTCGGCGGTGCAGTGGGCAACGGGCATCGGCGGGTCTTTCAA
ATCGGACGGCAGCGGGACGTGCAAGAACCGTCTGGGCCATGAACTTGTGA
GGAAGGCCACCGCCATGGTTGGGCAAACAACGACGAGTTCAAGAAAGTGC
AAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTCGGAAC
GACACAAGGTGAGAGGTGTGCGCGAATGATGTGCGCAGGTTGTATTCGGG
ATTTATTTTGTGTGTTCGTGTCGTCTCGGACAACAGAAAGGTCGAGGCAG
GCGCCGCCGCCCGCCAAGTATGCA
back to top