mRNA_P-littoralis_Contig99.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig99.15.1
Unique NamemRNA_P-littoralis_Contig99.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.530e-23
Identity = 67/182 (36.81%), Postives = 97/182 (53.30%), Query Frame = 1
Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE--------TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAA 519
            P  P P+  ++ ++   + A++A   T               TRR   +RE   Y+ E    D D  F  L YW  R  D +  + G V +PA  P++  IARL+LG++ATSCQAERNFSAL  ++  LR N  P+KVE+ +F+RLN+HL+      +R+ DA   + KA K   A +  AA
Sbjct:  657 PVEPAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDG-FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVA----EVRELDAAVVKAKAAKTKVAQSSMAA 833          
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.950e-23
Identity = 69/179 (38.55%), Postives = 100/179 (55.87%), Query Frame = 1
Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAA 519
            PA    +L+R+E+ R A+ A        + ++ +     TRR   +RE   Y+ E    D D  F  L YW  R  D +  + G V +PA  P++  IARL+LG++ATSCQAERNFSAL  ++  LR N  P+KVE+ +F+RLN+HL+      +R+ DA   + KA K   A +  AA
Sbjct:  465 PAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDG-FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVA----EVRELDAAVVKAKAAKTKVAQSSMAA 638          
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.900e-20
Identity = 68/184 (36.96%), Postives = 100/184 (54.35%), Query Frame = 1
Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDAL------QAERKAQKEAAANAKNA 516
            PA+   +L+R+E+ R A+ A  A    AS +V+       RR   +RE   Y+ E    + D  F  L +W  R  D +   +GNV +PA  P++  IARL LG++A+SCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+      +R+ DA       +A + AQK  A   + A
Sbjct:   84 PASKRKKLSRLEERRAARVA-AASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDD-FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVD----EVRELDAAVSLARAKAAKSAQKSVACQEERA 261          
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.910e-19
Identity = 57/140 (40.71%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  106 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGK--ALRDWDALQAERKAQKEAAANAKNA 516
            RR   +RE   Y+ E    D D  F  L +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++ DL  N    +VE+ + +RLNKHL+  +    A   W    A   A+K A A  + A
Sbjct:  501 RRVLIEREMLVYLAEQPQVDVDD-FNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLLAEVRAYDAAVAWARAMAANSAEKSAVAQEERA 639          
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 7.670e-19
Identity = 68/184 (36.96%), Postives = 100/184 (54.35%), Query Frame = 1
Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDAL------QAERKAQKEAAANAKNA 516
            PA+   +L+R+E+ R A+ A  A    AS +V+       RR   +RE   Y+ E    + D  F  L +W  R  D +   +GNV +PA  P++  IARL LG++A+SCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+      +R+ DA       +A + AQK  A   + A
Sbjct:  649 PASKRKKLSRLEERRAARVA-AASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDD-FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVD----EVRELDAAVSLARAKAAKSAQKSVACQEERA 826          
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.810e-18
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  106 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAAA 522
            RR   +RE   Y+ E    D D  F  + +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++ +LR N  P +VE+ + +RLN+ ++      +R +DA  A  +A++ A  NA  +AA
Sbjct:  397 RRVLIEREMLVYLAEQPQLDVDG-FNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRMLD----EVRAFDA--AVSRAREMATKNAAKSAA 529          
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.270e-18
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  106 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLN 414
            RR   +RE   Y+ E    D D  F  L +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++ D R N    +VE+ + +RLN
Sbjct:  118 RRVLIEREMLVYLAEQPQVDVDD-FNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220          
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.040e-17
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  121 QREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 426
            +RE   Y+ E    D D  F  + +W  R  + +   +G V APA  P++  IARLHLG++ATSCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+
Sbjct:  388 EREVLVYLAEQPQVDVDG-FNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLL 489          
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.860e-16
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  229 SGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQKEAAANAKNAAAG 525
            +G V +PA  P++  IARL+LG++ATSCQAERNFSA   ++  LR    P+K E+T+F+RLN+HL+      +R+ DA  A+ KA     A +  AA G
Sbjct:  335 TGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSARSHLIGQLRCKILPSKFERTMFIRLNRHLVA----EVRELDAAVAQAKATATKTAQSSMAAQG 429          
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 7.640e-16
Identity = 67/169 (39.64%), Postives = 96/169 (56.80%), Query Frame = 1
Query:   43 RLAQNAKIARPNTASSAVRETRRAA-AQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERKAQ---KEAAANAKNAAAGGAGV 537
            RLA++   +    A +AV   RR A  +RE   Y+ E    + +  F+ LE+W+ R+          V P   PH+ LIARL  G+++TSCQAERNFSAL  ++  LR++  P KVE+ +FLRLN+  IP + KAL D  A++A + A    +E  A  +  AAG A V
Sbjct:  341 RLAKSKAASAGRAAPAAVSTARRGAIVERELRMYLAEDPAEE-EYDFSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV-KALHD--AVEANKAAAARCQEKVAQVEAEAAGDAVV 504          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig99.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JGG8_9PHAE5.530e-2336.81Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE6.950e-2338.55Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJT6_9PHAE6.900e-2036.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE3.910e-1940.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE7.670e-1936.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE7.810e-1840.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE8.270e-1844.23Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.040e-1744.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE1.860e-1645.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE7.640e-1639.64Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig99contigP-littoralis_Contig99:89372..89961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7029.ACYPI51208-PA
PFAMsDimer_Tnp_hAT
Model size590
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.59e-05
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3AJC9@33154|Opisthokonta,3BV3P@33208|Metazoa,3DF56@33213|Bilateria,4224I@6656|Arthropoda,3SQFR@50557|Insecta
DescriptionhAT family C-terminal dimerisation region
Cds size528
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791910.1457977-UTR-P-littoralis_Contig99:89371..894031680791910.1457977-UTR-P-littoralis_Contig99:89371..89403Pylaiella littoralis U1_48UTRP-littoralis_Contig99 89372..89403 -
1680791910.1767285-UTR-P-littoralis_Contig99:89931..899611680791910.1767285-UTR-P-littoralis_Contig99:89931..89961Pylaiella littoralis U1_48UTRP-littoralis_Contig99 89932..89961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791910.1596704-CDS-P-littoralis_Contig99:89403..899311680791910.1596704-CDS-P-littoralis_Contig99:89403..89931Pylaiella littoralis U1_48CDSP-littoralis_Contig99 89404..89931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig99.15.1prot_P-littoralis_Contig99.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig99 89404..89931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig99.15.1

>prot_P-littoralis_Contig99.15.1 ID=prot_P-littoralis_Contig99.15.1|Name=mRNA_P-littoralis_Contig99.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
MEKIRLAQNAKIARPNTASSAVRETRRAAAQREYAEYMKEAALTDTDPTF
TALEYWKPRAVDGLDKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNF
SALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRDWDALQAERK
AQKEAAANAKNAAAGGAGVTPDAVL*
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mRNA from alignment at P-littoralis_Contig99:89372..89961-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig99.15.1 ID=mRNA_P-littoralis_Contig99.15.1|Name=mRNA_P-littoralis_Contig99.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=590bp|location=Sequence derived from alignment at P-littoralis_Contig99:89372..89961- (Pylaiella littoralis U1_48)
CCAGCGGCGCCAGTGCCTCAGCTGACTAGGATGGAAAAGATAAGGCTGGC TCAGAACGCAAAGATCGCCCGGCCGAATACCGCCAGCTCTGCTGTCCGCG AGACGCGAAGGGCTGCCGCACAACGGGAGTACGCCGAGTACATGAAGGAG GCAGCTCTCACTGACACCGACCCCACTTTCACTGCCCTAGAGTACTGGAA GCCGCGGGCAGTTGATGGGCTCGACAAATCGGGGAACGTTGTCGCTCCTG CCCGCTGGCCGCATGTTGGCTTGATAGCGCGGTTGCACCTAGGCGTTGAT GCAACCAGTTGCCAAGCGGAAAGGAATTTTTCCGCCCTCAAGTTGATCGT TAGCGACCTACGTGCGAACACTTCCCCCGCCAAGGTTGAGAAGACTATTT TTCTTAGGCTTAACAAGCACCTTATCCCCGGGCTAGGGAAGGCGTTGAGG GATTGGGATGCCTTGCAGGCTGAGCGGAAGGCGCAGAAAGAAGCAGCAGC TAACGCTAAGAACGCTGCGGCAGGTGGCGCGGGTGTTACCCCTGATGCAG TTTTGTAGGAGCGAGACTTCGTTCATGTCTATTTGCAATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig99:89372..89961-

>mRNA_P-littoralis_Contig99.15.1 ID=mRNA_P-littoralis_Contig99.15.1|Name=mRNA_P-littoralis_Contig99.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig99:89372..89961- (Pylaiella littoralis U1_48)
ATGGAAAAGATAAGGCTGGCTCAGAACGCAAAGATCGCCCGGCCGAATAC
CGCCAGCTCTGCTGTCCGCGAGACGCGAAGGGCTGCCGCACAACGGGAGT
ACGCCGAGTACATGAAGGAGGCAGCTCTCACTGACACCGACCCCACTTTC
ACTGCCCTAGAGTACTGGAAGCCGCGGGCAGTTGATGGGCTCGACAAATC
GGGGAACGTTGTCGCTCCTGCCCGCTGGCCGCATGTTGGCTTGATAGCGC
GGTTGCACCTAGGCGTTGATGCAACCAGTTGCCAAGCGGAAAGGAATTTT
TCCGCCCTCAAGTTGATCGTTAGCGACCTACGTGCGAACACTTCCCCCGC
CAAGGTTGAGAAGACTATTTTTCTTAGGCTTAACAAGCACCTTATCCCCG
GGCTAGGGAAGGCGTTGAGGGATTGGGATGCCTTGCAGGCTGAGCGGAAG
GCGCAGAAAGAAGCAGCAGCTAACGCTAAGAACGCTGCGGCAGGTGGCGC
GGGTGTTACCCCTGATGCAGTTTTGTAG
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