mRNA_P-littoralis_Contig99.135.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig99.135.1
Unique NamemRNA_P-littoralis_Contig99.135.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig99.135.1 vs. uniprot
Match: D7FJZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ5_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 1.660e-128
Identity = 277/492 (56.30%), Postives = 325/492 (66.06%), Query Frame = 1 
Query:   16 LSPTSDGTGSPTLFDAARAAMCLLKEEDHVWTIETCMETINLLRARNNGLKEQLLEVDTNFADHVEARQRKIRELNREVEGAAAVKAQLEATLEAERGDRXXXXXXXXRQRDAEILAYETTIERLTEDVESLQQFSGERNKFVDKLAALEAANAGLVDTQEMRVQSWRCKLANFEAEKERDVARLVLEAKKNMRDEVEIAFGEEFERLVKDNQVLKDKLKQQDSKIQIILSELEHEIAAKVELKTELDILRALENKSAGKIKYYMRMLKRSANELAQQCVNGD---GEECAPFKEWSAGAAGAARVPRVQTCHSSGLE-TNIVGAGAGSS-RRTKSNSKRRPGTAPAKIRRCGGGRGRVG---GENRAAEAGKQPSFVNMLSTDDECCAHQY---SYSGSNHP---------TPTGRPSSQRIR-AQTAERSRAHSNS---------------------TSSNCGGCFRVGDAKKHPRRGAQSADRSRTRSS 1365
             SP SDGTGSPT FDAARAAMCLLKEEDHVWTIETCMETINLLRARNN LKEQLL+VDTNF DHV+ARQRKI+EL   VE A+A+K QLEAT+E+ERGDR        RQR+AE  AY+ TI+ LT +VESLQ +SGER++   +LAALEAANA L D QE+++QS R KL+  EA KE +VARLVLEAK+NMRDEVEIAFG   ERL+++NQ LKDKLKQ DSK+QIILSELEHE AAK  LKTEL+I RA+E+KSAGKIKYYMRMLKRSA ELA QC +G    G   + F +    AA A     ++ C SS LE  +  GAG G   R+  S    RPGTAPAK+R  GGGR       G     +AG+Q S  + +  D +C   +    S  G   P         TPT +P+  R R AQTA RSRA + +                     T   C  C   G  K+HPRR AQ+ADRSR RSS
Sbjct:   23 FSPPSDGTGSPTSFDAARAAMCLLKEEDHVWTIETCMETINLLRARNNALKEQLLDVDTNFTDHVQARQRKIQELTLAVESASAIKEQLEATVESERGDRRRQERDQQRQREAEAAAYQETIKALTSEVESLQGYSGERDRVNAQLAALEAANAELQDQQEIKLQSLRKKLSEVEAAKEDEVARLVLEAKENMRDEVEIAFGGAHERLLQENQELKDKLKQLDSKLQIILSELEHETAAKAGLKTELEIARAMESKSAGKIKYYMRMLKRSAAELAHQCESGGHNRGYGSSFFNDHGGNAAAADEASNLRGCQSSSLEGRSKAGAGRGDGVRKAPSKGGTRPGTAPAKVR-SGGGRXXXXXXXGHGNNGKAGEQESLNSAILIDGDCARQRSGCCSGGGGRGPGCEKNSQPHTPTDKPNQLRKRRAQTAARSRASAPTDNVGGNYGSRCWCGSGGNGAGTGKRCSTC--AGGTKRHPRRRAQTADRSRARSS 511
[Close]
BLAST of mRNA_P-littoralis_Contig99.135.1 vs. uniprot
Match: A0A6H5JUJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ9_9PHAE)

HSP 1 Score: 416 bits (1069), Expect = 6.180e-125
Identity = 417/1046 (39.87%), Postives = 505/1046 (48.28%), Query Frame = 1 
Query:  124 METINLLRARNNGLKEQLLEVDTNFADHVEARQRKIRELNREVEGAAAVKAQLEATLEAERGDRXXXXXXXXRQRDAEILAYETTIERLTEDVESLQQFSGERNKFVDKLAALEAANAGLVDTQEMRV----------------------------------------------QSWRCKLANFEAEKERDVARLVLEAKKNMRDEVEIAFGEEFERLVKDNQVLKDKLKQQDSKIQ------------IILSELEHEIAAKVELKTELDILRALENKSAGKIKYYMRMLKRSANELAQQCVNGD---GEECAPFKEWSAGAAGAARVPRVQTCHSSGLE-TNIVGAGAGSS-RRTKSNSKRRPGTAPAKIRRCGGGRG--RVGGENRAAEAGKQPSFVNMLSTDDECCAHQYS--------------YSGSNHP-TPTGRPSSQRIR-AQTAERSRAHSNSTSSNCGG-------CFRVGDAKK--------------HPRRGAQSADRSRTRSSG--------AYRCSHPLTVTLPP--HYR---IFTGSD----------------VDTEKTNATDVETANNIGGQSQRNGESKESKEGAVTVVDQHRLQTKEEDAGNEGNRS--DNAATINIDSCRLRQRGDEGEEALLAMRKSHRPPILADHSVRRSRGSDIVDSSDGQQAKXXXXXXXXXXVEKETATETAKLTRDASAHLGDEVAEKE----IRSAAAMDGVAVQCWRDLDAYLQHRGDS-TTRPDRPATCGSM---NPGRPPATGHRAMFSRQHHQYAGRKCTRQNYHCG-QSGVGDSSHSNNLRTIRYRRPWTASPYVRGGENVGSGGGEQKWWDRLWG-GGDGKGHGGARCNEEVGARGGKLWGEHNESRERELLETLRVAE-----LGGSVTQNGMKEGLD-ESVFRNGHENDGHHRIGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTAKTRAAIE-STDGGIRNRIPQKPRPQQTVLVRERLGGVGTGAPTAARSSEIDMMAAEEAGK 2811
            METINLLRARNN LKEQLL+VDTNF DHV+ARQRKI+EL   VE A+A+KAQLEAT+E+ERGDR     XXX   +AE  AY+ TI+ LT +VESLQ +SGER++   +LAALE ANA L D QE++V                                              QS R KL+  EA K+ +VARLVLEAK+NMRDEVEIAFG   ERL+K+NQ LKDKLKQ DSK+Q            I+LSEL HE A K  LKTEL+I+RA+E+KSAGKIKYYMRMLKRSA ELA QC +G    G   + F +    AA A      + C SSGLE  +  GAG G   R+  S    RPGTAPAK+R  G G G    GG     +AG +P+ +N  S  DE  A Q S                 ++HP TPT +P+  R R AQTA R RA  ++ + N GG       C   G+  +                   AQ+A RSR RS+           R  +P+  T PP  H R   + +G D                VD   T  T  +  + IG  +QR      +  G  +   QHR        G  G +   +N A                                                       XXXXXXXXXX         A +   A   L      KE     RS +A DG AVQCWRDLD YLQ RG   T+R DRPATCG     +P RPP   H+  ++ +H+Q+  R   R   H G   G G+SS     R+ R  RPWTA  ++  G   G G G+Q WWDRL G GG+G    G+RC   V  RGG+LWG+H+E+RE EL +TL   E        S TQ G    LD ES  R     D H R    A                                       SR A+ RAA+  +   G     P  PRPQQTVLVRERLGGVGTGAPTA R SEID +AAEEA K
Sbjct:    1 METINLLRARNNALKEQLLDVDTNFTDHVQARQRKIQELTLAVESASAIKAQLEATVESERGDRRRQERXXXXXXEAEAAAYQETIKALTSEVESLQGYSGERDRVNAQLAALEVANAELQDQQEIKVGSFARWFDMETFSWSSTTMIDSPPCNAGWFAAMPLIAGCDEVAAGLQSLRKKLSEVEAAKKDEVARLVLEAKENMRDEVEIAFGGAHERLLKENQELKDKLKQLDSKLQASLACQPFSPTLIVLSELAHETAEKAGLKTELEIVRAMESKSAGKIKYYMRMLKRSAAELAHQCESGGHDRGYGSSFFHDHGGNAAAADEASNPRGCQSSGLEGRSKTGAGRGDGIRKATSKGGTRPGTAPAKVRPGGVGVGGREGGGHGNNGKAG-EPAALNSASLIDEDFARQSSGCYCXXXXXXXXTGCEQNSHPQTPTDKPNQLRKRRAQTAARFRA--SAPADNGGGSYGSRCCCGSGGNGARTXXXXXXXXXXXXXXXXXXAQTAGRSRARSTANGSPQYNICGRNDNPVPETRPPPSHSRSPPLGSGGDGGGDAEYVPVVAADGSVDQAPTRGT-ADVVDTIGRHAQRRTPQAGAGWGGASDG-QHR-------DGRPGQQKIEENEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAVNGGAVGDLPPSRCPKEGVSMERSGSAGDGRAVQCWRDLDEYLQLRGGGKTSRADRPATCGGTRQRSPRRPPVASHQTKYALRHNQHHQRNTGRNLLHSGFHGGQGESSDPYKRRSSR-PRPWTAGAHLCHGSG-GGGRGKQNWWDRLGGKGGNGVEDNGSRCKGGVETRGGRLWGDHDENREHELFQTLIRREDPEKDAANSWTQQGPD--LDNESALRV----DDHRRNSDLAVGQQSWGEEETLLRAVDDGDLDLLSPRGRQQQDNCHNPPSRAARARAALAVAAKAGPFAASP--PRPQQTVLVRERLGGVGTGAPTAPRQSEIDAVAAEEAAK 1024
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig99.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJZ5_ECTSI1.660e-12856.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUJ9_9PHAE6.180e-12539.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig99contigP-littoralis_Contig99:570320..579776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2883
Hectar predicted targeting categoryother localisation
Exons13
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003070.1
Cds size2883
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig99.135.1prot_P-littoralis_Contig99.135.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig99 570320..579776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791914.867332-CDS-P-littoralis_Contig99:570319..5704121680791914.867332-CDS-P-littoralis_Contig99:570319..570412Pylaiella littoralis U1_48CDSP-littoralis_Contig99 570320..570412 +
1680791914.8782136-CDS-P-littoralis_Contig99:571076..5712611680791914.8782136-CDS-P-littoralis_Contig99:571076..571261Pylaiella littoralis U1_48CDSP-littoralis_Contig99 571077..571261 +
1680791914.8888018-CDS-P-littoralis_Contig99:571534..5716401680791914.8888018-CDS-P-littoralis_Contig99:571534..571640Pylaiella littoralis U1_48CDSP-littoralis_Contig99 571535..571640 +
1680791914.9024034-CDS-P-littoralis_Contig99:572277..5723971680791914.9024034-CDS-P-littoralis_Contig99:572277..572397Pylaiella littoralis U1_48CDSP-littoralis_Contig99 572278..572397 +
1680791914.9176962-CDS-P-littoralis_Contig99:572676..5727751680791914.9176962-CDS-P-littoralis_Contig99:572676..572775Pylaiella littoralis U1_48CDSP-littoralis_Contig99 572677..572775 +
1680791914.9285357-CDS-P-littoralis_Contig99:573125..5732181680791914.9285357-CDS-P-littoralis_Contig99:573125..573218Pylaiella littoralis U1_48CDSP-littoralis_Contig99 573126..573218 +
1680791914.9402106-CDS-P-littoralis_Contig99:573887..5740041680791914.9402106-CDS-P-littoralis_Contig99:573887..574004Pylaiella littoralis U1_48CDSP-littoralis_Contig99 573888..574004 +
1680791914.9558716-CDS-P-littoralis_Contig99:574144..5752691680791914.9558716-CDS-P-littoralis_Contig99:574144..575269Pylaiella littoralis U1_48CDSP-littoralis_Contig99 574145..575269 +
1680791914.9660542-CDS-P-littoralis_Contig99:575611..5757141680791914.9660542-CDS-P-littoralis_Contig99:575611..575714Pylaiella littoralis U1_48CDSP-littoralis_Contig99 575612..575714 +
1680791914.9783134-CDS-P-littoralis_Contig99:576183..5762881680791914.9783134-CDS-P-littoralis_Contig99:576183..576288Pylaiella littoralis U1_48CDSP-littoralis_Contig99 576184..576288 +
1680791914.9913359-CDS-P-littoralis_Contig99:576351..5765631680791914.9913359-CDS-P-littoralis_Contig99:576351..576563Pylaiella littoralis U1_48CDSP-littoralis_Contig99 576352..576563 +
1680791915.0040581-CDS-P-littoralis_Contig99:577982..5782161680791915.0040581-CDS-P-littoralis_Contig99:577982..578216Pylaiella littoralis U1_48CDSP-littoralis_Contig99 577983..578216 +
1680791915.0143387-CDS-P-littoralis_Contig99:579485..5797761680791915.0143387-CDS-P-littoralis_Contig99:579485..579776Pylaiella littoralis U1_48CDSP-littoralis_Contig99 579486..579776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig99.135.1

>prot_P-littoralis_Contig99.135.1 ID=prot_P-littoralis_Contig99.135.1|Name=mRNA_P-littoralis_Contig99.135.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=961bp
MKGVPLSPTSDGTGSPTLFDAARAAMCLLKEEDHVWTIETCMETINLLRA
RNNGLKEQLLEVDTNFADHVEARQRKIRELNREVEGAAAVKAQLEATLEA
ERGDRRRQERDQQRQRDAEILAYETTIERLTEDVESLQQFSGERNKFVDK
LAALEAANAGLVDTQEMRVQSWRCKLANFEAEKERDVARLVLEAKKNMRD
EVEIAFGEEFERLVKDNQVLKDKLKQQDSKIQIILSELEHEIAAKVELKT
ELDILRALENKSAGKIKYYMRMLKRSANELAQQCVNGDGEECAPFKEWSA
GAAGAARVPRVQTCHSSGLETNIVGAGAGSSRRTKSNSKRRPGTAPAKIR
RCGGGRGRVGGENRAAEAGKQPSFVNMLSTDDECCAHQYSYSGSNHPTPT
GRPSSQRIRAQTAERSRAHSNSTSSNCGGCFRVGDAKKHPRRGAQSADRS
RTRSSGAYRCSHPLTVTLPPHYRIFTGSDVDTEKTNATDVETANNIGGQS
QRNGESKESKEGAVTVVDQHRLQTKEEDAGNEGNRSDNAATINIDSCRLR
QRGDEGEEALLAMRKSHRPPILADHSVRRSRGSDIVDSSDGQQAKKDDTA
AAAAAVEKETATETAKLTRDASAHLGDEVAEKEIRSAAAMDGVAVQCWRD
LDAYLQHRGDSTTRPDRPATCGSMNPGRPPATGHRAMFSRQHHQYAGRKC
TRQNYHCGQSGVGDSSHSNNLRTIRYRRPWTASPYVRGGENVGSGGGEQK
WWDRLWGGGDGKGHGGARCNEEVGARGGKLWGEHNESRERELLETLRVAE
LGGSVTQNGMKEGLDESVFRNGHENDGHHRIGATAAASAADTAAGGGGEQ
ERLLWTVDDSPDLRQRQQQHYYSSSRTAKTRAAIESTDGGIRNRIPQKPR
PQQTVLVRERLGGVGTGAPTAARSSEIDMMAAEEAGKAAAKAAVAATATR
PVAAPIAVMTA
back to top

mRNA from alignment at P-littoralis_Contig99:570320..579776+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig99.135.1 ID=mRNA_P-littoralis_Contig99.135.1|Name=mRNA_P-littoralis_Contig99.135.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9457bp|location=Sequence derived from alignment at P-littoralis_Contig99:570320..579776+ (Pylaiella littoralis U1_48)
ATGAAAGGCGTCCCCTTGAGCCCTACCAGCGATGGAACGGGGTCGCCGAC
GCTCTTTGACGCGGCGCGCGCAGCGATGTGCCTTCTCAAGGAGGTGAGAT
TCAGCGCCCGCGAAAGCTGGTGCACCCACATATGTTCTTGCAGGAGAAAT
AGCGCACCGTAATATGGAGTCAAGAACAACGAAGCATGTTCCGGGCTTTC
TCAAGGATACCAAATAAGAGAGTAAAGCGACTGTGCCTCGCTGTATTCCC
ATACGCCAATCAAACCACAATTGAGACAGAGCAACACCGAAACAATTCGG
AGAAGATGATTCGGGGGAGGGGGGGAGGTGGGCGCTATGCTTTTTTTTTT
ACCGTTCTAAAACGCGTGGCTGGGGGCCGTTCGCTCTGGTGGGAAGCAGC
TTTCCGGGCGTGGGTGCTCTCGTGTGTCTTCCCGGCTTGCGATGAGACCT
GCACCCCGTCGGCGCGTCGGCGAGAGGTGGAAAGGGAGGTCGACTGTGCG
ATTGGTTTCCCTTGGTTCGGTAACGGCAGAGCTCATGGGGGGTATATATC
AAACCGCCCTAACTTCACAGAGAACGGTCGGCTGGCTATTGCGGTACAAC
AAAGCCTTTCCCCCGGAGGTGAAAAACAGTCGCATTGCAAAGAGATCTTG
TGACAGAAAGCGAACAATATGCCCCGCGAAGCTTCTGTGCTGCACGCCCC
AACGCCCCCCCCCCTCCACCCACACACTTTTGTGTTTACGTACACGTGTA
TTGGCAGGAAGATCATGTTTGGACGATCGAAACTTGCATGGAAACCATCA
ATCTCTTGCGGGCGCGAAACAACGGTCTAAAGGAGCAGCTGTTGGAGGTT
GATACCAACTTCGCCGACCATGTGGAAGCGAGGCAGCGAAAGATCAGGGA
GCTCAACCGGGAGGTGGAAGGCGCTGCGGCCGTGAAAGCCCAGTAAGAGG
GCTTTACCGGAGATGACTTGGAATTTCAGTTGGTGTACTCCATCACAGGA
AGACTGTTTCGTGGTTGATCTCTAGCGGTAACGTTGCATCTTGTCGATAG
GATGCGGCATGTAGTAGGGCTCCTGCCCGGCAAAAACGTCGCATAGTTCG
TCGTCGTTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGCTGTTGTTGTTGTTGATTTCGTAGTCATAACCTGACC
TCTGCTTTATGTCAGGCTTGAGGCAACGCTGGAGGCCGAGAGAGGAGACC
GCAGGCGGCAAGAAAGGGACCAGCAGCGTCAAAGGGACGCGGAGATCCTC
GCGTACGAGACCACCATCGAAGTGAGCTATCTATGACGTGTTCAGACAAA
TGCAGCTTAAAACATGGAAAACTCTGCCACACACTCGTACATAATTTGAC
TTTTTTTGTTGTCGTTTTCAAGTGTCCACGACTTCGCGTTACCTACAGAC
CATTGCTAATCATCGGTAGTGAACGCGAATGTCAATATATGCGAACTCCT
GCTGTTATTTTGTCTGTTCTCCAATTGTGTTGGGCTCAACCCCCGGCACT
TGATGCCGTTTCCCCGATTTCGCGGGAAAATGTAGGCAATATGGTTTGTG
TCCGCCTTCCCGTCGAGACTACTGTAGGTACACCACAACCATTCAGAATG
CCGACCCATGCAGCGCTTGCCGGGGATTCTCCTGAGAAAGAAGTAGAGAG
AGAGAGGGAGCGAGACGACGCCAATACCTTTGGAACCTAGTGGGACCCAC
GCTGCATGGCGGCTTTTGCTCGCTTCGCCTGTTTTCTGCAGCTTCCGGCC
GCAGTACAATCCGTTCAGATCCCACGTTCTAAGCTGGCCAAAACTCTGTC
ATCATCTGTTGTGTTGGTTCCGAGGCAATATTTCCCCAGTCGAGTGTAAA
GCTGGGCGTTTCACCGTGTACCAACTCCGAGTGATTTTCCCTTCCTTTAC
TGTTGTAGCGTCTGACAGAAGACGTGGAGAGCTTGCAGCAGTTTTCCGGA
GAGAGAAACAAATTCGTCGACAAACTCGCAGCACTCGAAGCAGCTAACGC
GGGGCTTGTGGACACCCAAGAGATGCGGGTAAGCTAACAAAACAAAGCAG
GTGCTGTTGAAGTCATGAGATGTTTATTTATACTTTATTTTTGTTGTTCT
GCGCTATTTGAGACTGCAAAATGATATTATTTCTGTGTCACCTATGACCA
GCATTCCCCCTTATACCTTGTCCATTTTGTGTGTGTGTGTTTTTTCTCCA
AATGAATAACACCAACGACCGACTTACCACGGCAACCCAATGACAACGAC
GACGACGGCGGCGGCGACAACAACCACAACGGCATCAACAACAACAAATG
ATCGTAGGTGCAATCGTGGAGATGCAAATTGGCAAATTTTGAGGCCGAGA
AGGAACGAGACGTCGCACGTTTGGTGCTCGAGGCAAAAAAGAACATGCGC
GACGAGGTACCACTGCACTGCTTTTACTACACCACTGTCTACCTACCTGG
TACATGTGTGAGTGCCTATTAGGTACAAACTTTTCGGATTCATCGATGCC
GATCAGCAGCGATTGATTTGACTGAGCGGCTCGACCCGTTCGTAAAAGGT
TGAGGAGATTCTTGCAGTTTTGTGCTCGACTCTGTGATTTCATATTTTGC
TGAGGTTTGAAACTAGTGAGTGCAGGAAGGAGGAGGAAAAAAAACCAAGC
GAAAGGTAGACAAAGAACGGTTTAGATATCGGAGAATTTTTACTTGCCGT
GGATTCGACTCTCATCCTCCGTCATGCATGGCCTCTTTGGCGCTTGCCTT
CCGCAGGTGGAAATCGCGTTCGGCGAGGAATTTGAGCGCCTCGTAAAGGA
CAACCAGGTGCTGAAAGATAAGCTCAAGCAACAAGACTCCAAAATCCAGG
TGAGCCGCGATCGAACGGCTCCCGGTTGATCGATTCCGGACCAGCTTGTT
GAGGTTTGTCCCTTCTTTTACCATTTTATTTCCTCCTGCACGGTTACACG
ATGATCGAGCCTCCCCCCGCACAACAGTTTAAGTATTTGTTTTCGTTTGT
GAAAACAAATCACCAGCAGTTCGACCATGTCGGAGGTTAAGCACGAGGCG
GAGGCCAGGCAACAACGGGGCTGAAACCGGAACTTTTACTCTTTGCGTTA
TTTCACCCGCTTTGTGGTTCCTGCACTACTCGAGCAAGTATTAGGGAGTC
CTTCCACCCTTTCTTGGCAGCGTAAGGCATTCCTGCTGCCATCCTGTTTT
GAAGTCGGGTGTTGTTGCCATCGCCTGTGTGGATTGTGGCGAATAGTGCT
CCACGCGATCGATGGTCGTTTCGCTAACGATGAAAAGGAGGAGGAGTCTC
ATGCTCGAAAAAGTTCGAGTCACTTAATTGGTTCATCTAGTTGCTGGTGG
TGCTGGTGCTGGTGTTGTTGTTGTTGTTGTTGTTTTTGTTGATGATGATG
GCAAGAGATAACTTCATCCAATGAATGCAGGCTACGTAACTCAAACTAGG
TTGTTGCATGGACCAGTGGACAGTTTGCCATGATGGTCAAACCGTACGAA
ATAATCTTCCACCAGTAGATCATCCTATCGGAGCTCGAGCACGAGATCGC
GGCAAAGGTGGAGCTGAAAACCGAGCTGGACATCTTGAGGGCGCTAGAGA
ACAAATCTGCCGGGAAAATCAAGTACTACATGAGGGTGAGACGCTTGTTG
TTGTTGCTGTTTTTCTTGCCGCAGTCGGACTTTTTGTCGTGGTGGTTAGG
GTTGTTCACTAACCTATGATATGGCTTGGTATGATTCTAGAACACCCCGT
TTCCGCATTCCCGGCTCTCGTCCAGATGCTGAAGCGCAGCGCCAACGAGC
TCGCCCAGCAGTGCGTAAACGGAGATGGCGAGGAGTGCGCACCATTCAAG
GAGTGGTCGGCAGGTGCTGCGGGTGCTGCCAGAGTGCCTAGAGTACAAAC
TTGCCACTCCTCTGGCTTAGAAACGAACATTGTGGGGGCAGGAGCAGGAT
CGTCAAGAAGAACGAAATCAAACTCGAAGAGAAGGCCTGGAACGGCCCCG
GCTAAGATTCGCCGCTGCGGCGGCGGGAGAGGAAGAGTCGGTGGTGAAAA
CAGAGCAGCCGAAGCAGGGAAGCAACCGTCTTTTGTCAACATGTTGTCGA
CTGACGACGAGTGTTGCGCGCATCAATATAGCTACAGTGGAAGCAACCAC
CCTACCCCGACCGGCAGACCAAGCTCGCAGAGAATCAGAGCTCAGACCGC
GGAGCGCTCGCGAGCGCATAGTAACTCCACCAGCAGCAACTGTGGCGGGT
GCTTCAGGGTTGGAGACGCCAAGAAGCATCCCAGAAGGGGGGCTCAATCC
GCAGACCGCTCCCGAACGCGGTCCTCTGGTGCCTACCGTTGTTCTCATCC
CTTGACAGTAACGCTTCCCCCTCACTACCGAATTTTTACCGGGAGCGATG
TCGACACAGAGAAAACGAACGCTACTGATGTTGAGACCGCAAACAACATC
GGCGGTCAGTCGCAAAGAAACGGAGAATCGAAAGAAAGCAAGGAGGGTGC
CGTTACCGTTGTTGATCAGCACCGACTACAGACGAAGGAAGAAGACGCAG
GAAACGAGGGAAACCGCAGTGACAACGCAGCCACCATAAACATCGACAGC
TGCCGCCTACGGCAGAGGGGGGACGAAGGAGAGGAAGCGCTGCTTGCCAT
GCGGAAGAGCCACCGCCCACCGATATTGGCTGATCATTCAGTGCGGCGCT
CGCGCGGCAGCGACATTGTTGATAGTAGTGATGGACAGCAAGCAAAGAAG
GACGACACGGCGGCGGCGGCGGCGGCGGTCGAGAAGGAGACAGCGACGGA
GACGGCGAAACTTACAAGGGATGCGTCCGCCCACCTGGGAGATGAGGTTG
CCGAAAAGGAAATACGCTCGGCAGCGGCGATGGATGGGGTGGCAGTGCAG
GTATGTTTAGGTGTGACTTCGTCGAAAAGGCAAATTGAAGACAAGCAACT
GGCGCGACCTTCACAATTGCTTCCCCCTGCCTTCAACGCAATTGATTTTC
TGTGCTGTGCAACAAGGCTGACTCTGGATGACGGCACCCACCCACCGAGG
AGTTTTGCACCATCTAAAAAGCCACAGCCTAAAAATGCAGACCAGTAGAG
AAACTGCGGTCAAATCATGACTGTGCGATAGTGCAGCGCGAGGACGAGTA
GCGTTAAAGAGGTGTGTCGTTTTCATCTCTAACATTGTCCTCCACGCTTC
CGCTCGGAATTTGTACCTCCTGGCATTTCCGCGGCTTTGCAGTGTTGGCG
CGACCTCGACGCCTACCTGCAACATCGCGGCGACAGCACCACTCGTCCGG
ACCGTCCGGCCACTTGTGGCAGCATGAACCCCGGAAGACCGCCAGGTAGT
TTGACTGCGAGAACGCCCTTCGAGCGAAACCCCGGGGGTTGTATCCAAAA
AATGTGTTTCATTGGGCGGGTGCTCTATATAAACATAGTTCTTCTGAACG
GCGGTTACATGCCATTTACGAGCGCGAACGATCTACAGCAGATATCATTG
GAAAGCTCTCACCGGGATGTGTCCAAAAGCCGCCGCTTTACGATGTAAGG
GTCCTCTACCGTCCTCGAGGAGTCGGCAAACGGAAAAAACAATACGATCT
CAGCGCACCATGGCGTCTGGCCCATTGTTGGCGGCATTCTTTCTTTTAAG
AGGTGGCGGTGTGGGCAGCGACGACTGATTGCGTCAAGCATCAAAGCACA
GGTCTCATCTCCGCCCACCCCCACCACTCACCGTGACCCTTGCCGTCCTC
TTTGCCGGACCCCATCATACCCACTTTTCGGAAATTTCCATCGCCCTCGA
TTCAAAAACAGCAGCGACGGGCCACCGGGCGATGTTTTCCCGGCAGCACC
ACCAGTACGCCGGCCGAAAGTGTACAAGACAAAACTATCACTGCGGCCAA
TCGGGAGTTGGAGACAGCAGTGCCGACCCCAGCCATAACGTCGGCGGCGC
GGGGGATGGCGACACCAGCAGTAGGATAATAGGTCATTCGAACAATTTGC
GCACGATTCGCTATCGACGACCTTGGACGGCTTCGCCATATGTTAGAGGT
GGGGAGAACGTCGGCAGCGGTGGTGGAGAGCAAAAGTGGTGGGATAGGCT
GTGGGGGGGTGGTGATGGTAAGGGCCATGGCGGCGCGCGCTGCAACGAGG
AAGTGGGAGCTCGCGGCGGCAAGCTTTGGGGAGAACACAATGAGGTACTT
TTTTGACATCTGTTTCCCCTATGCTGTGTGCGCTGATGTTCTCGGTAGTG
GTTACTGATGATGATGTTACACACACAACGGTTGGTTGTTGTCCACGAGC
TGGCTTGAGCTGTGGTGTAGATGGTCAAACTTGGCTGGCGTCGCAATTGT
ACTCAATACAATTTTTCGTCGCAATTCAAACCAAAGGTTTATACTAGGGC
CCTGAAATTTTCAATCAAGTGTCTGTCGTTTCCAGTTCAGGAGGGGGAAT
GATATTCAACGTGCGTGCGCTGACTCGTTGCTGGAGAAAATGAAAAAAAC
ATTTCCAGGTGCTTTCCAAGCTTCAAAGCCAACCATGGCCCGTTGTAGCT
TGTACGAAGTAAAATTACGAACGGGTTGCGGTGCGTGCTATCGAAAGAAA
GAAAATCCGGTTTCGAAACCAGATGTGAGTGAAGTCTGGGAGATTTCTGG
AACACGATTGGTCGTGGCTGAGATAATTGCAAGGTTGCAATCTTGCCCAG
TCTACCTGTCGATGGCTCCTGTATCTTCCCATCTTAAACTCTGATTCTGA
CTTCCAAAAACCGATTTTCATTTCATCGTTATTGCTTGTTTTTGATCGGT
TAGTCGACTTTGGCACACCGAAACCCATATGTGCGTTCTTGATCTGCTGG
ACCGGTCTTGGGCAGTTGTACCTGTCAGCTGCTGTCGGCATGCACACAGC
AACAGCACACAAACACACCGCACAAACCAACAACTACAGCGCCCGACACA
GAGCATGAGCAGGACTGCTGCCAGCACACAAACATCCCCGCACACCACCA
GTAGACCAGGAATACCTGCAAACACCACAACACAAAGAGTCACACACCTA
TTCGTTGTTAAGCATGGGCAGGTTGTGGCAGCAAGTTGTAGCAGGGGTTG
TGTCACACACAGAGAGCATGATTGGTGTTGACTCTAACGTCCTACTTTGA
CGACACCAGCAGTACCGCGCGCAAAACAGGGGGGGGGCGAGCGGGGTGCT
GCTGCCTGGACATTCGTGCTGTCGGCCATCAGCAACATGCTGCCGTGCAT
GCACGATGAGAGCTATTTGCTGCCGCCACGTCCACGTCGAAACCGGGACT
GTTTGAATAGGACAGCTTGCGGCTTCTTTGAGTTATCCTTGAATTCGCTT
GTTTTTCTTCTTGTGTTTGAAACTTGCGCGTATGAAGTCAGAATCGGGGA
GATATTTCAGACTCGAACTGAAATCTGATTTCGAAAGTAGCTTCTGTGCT
CCTCTTGTTTGCACGCACTCTTGCGCTGGCCCTCCGGTGCGTGCAGTACC
GCACTTCCAAGGCGTGTATCGTCCGACGCTTCTTCCCGCGCCTTCCCGCC
ACGCCACCCTCTCTGCTCCGAAAATTTCAAAATGAAAACGATCCCGTTTT
TTTCACATCAAAGAGCCGCGAGCGTGAGTTGTTGGAAACTCTCAGAGTGG
CCGAGCTCGGCGGGAGCGTAACGCAGAACGGGATGAAGGAGGGGCTCGAC
GAGAGCGTTTTTCGAAACGGACACGAGAATGACGGTCACCACAGGATCGG
GGCTACTGCCGCTGCTTCTGCTGCTGATACCGCCGCTGGGGGAGGTGGGG
AACAAGAGCGGCTGCTCTGGACCGTGGACGATAGCCCTGACCTGCGAGTC
TGGTCAGGGTAAGGAAGTCTATCACTGGGTTGCCACGAGTCGCCAATGGT
CCCACGTCGAGGCTCACAACCAATGGCATGTTTACTGTAGAACGGTGGGG
CGCCCCACCTCGCAAACGCCCCACCTCACAAAAGATGAGGCAATCGATAG
GTATATGCATGAGAGAGAAAGCCACACCTCTGTGCCACGCCTACTACTTC
AGCAGATAACATTTAATCGAGATACATGGCAATATGAATCACACCAGGTT
AGACTGATCTGTGGTTGCAGAGCGACCACTATGTAATGGTGTGGCTACAA
GTACCACTCTGGTCCGAAATATAGCTGGGATTTCAGGGACGGAAAAATAT
CTCGGGATTGACTTCGAATTTTGAGACGCGGGTTCGAGCCCCGGAAACGT
CATTTCTTTTGCTAAAACTTTGACCACTTTTTTTTTTTTTCGATTTTTTT
TTTTGATTTTTTTTGCGCGCAAAGTTGAAACTTTATTTTGGTTTTGGTTT
TTTCCACCGGTTGAAGACATTGGCAGTGGTAAATCAAAGCAGGCAGAGTG
GGTACAAGAGGCCAGGGGGCTACCGACAACACAATAAAAAATGCTTAAAA
AAAAGAGTTTTTTTGAAGCCGTACGAGCGTGTCGAAAATGTCAATATTCC
CTTACCACAAAAGTCCGGAAAATCGGGGGGGGGCTGATAACGACTCATCC
CCGCTGTTAAGGTTGGGATTTCAATTTTGACTATCTTAAATAGGCTGTAG
GATTATTGCCGCGGAGTCTCACAGGCTGAAATCGTTACCATCATGCTTAA
CTAGAATCCCACCTATATTCCGGTATTTTAAAATCCCAGCTATATTTCGG
ACCAGAGTGGTATGTAACAGGGCGATATTTAAAGCCGGGCTTCTGTCTGC
ATTGCCCCCTGCGTTGGACACGTTCTCGTACCTCAGTACTAGCATGGTCC
AGCACTTGCATAGACCACTTTGAGCAAGCTGAATAATCATATGTATTGTG
TTCTTTCATGATCTGGAATCCGCAAGTGACCGAAAGGGGTGGGAATTCTG
GCTTGCATACAACACCTACCTCTTTCTCTTCCACTTTTGGCATCCAATAC
TGACGAAGTGTGACTCGAACAAGTGTGCTCGATTGACTGAGTCACGCGCG
TTCGTTCGTGCGTGATTTCCGCGCTGATCGGGACAAAAAAAAACCCACAC
AGGCTCTCTCTCGGCGGCGGCGGCGGACAACAACAACAACAACAACCACA
TCAACATCAAGGACAGCAACGACAGCAACAACACTATTACTCTTCTTCCA
GGACCGCCAAAACAAGAGCGGCGATTGAAAGCACCGACGGCGGCATTCGG
AATCGCATTCCCCAAAAGCCGCGCCCGCAACAGACGGTGCTCGTTCGAGA
GAGGCTCGGCGGGGTCGGCACCGGTGCTCCGACCGCAGCCCGGTCGTCCG
AGATTGATATGATGGCCGCCGAGGAGGCCGGCAAGGCAGCGGCTAAAGCA
GCGGTAGCTGCCACCGCTACGCGACCAGTAGCAGCACCAATCGCGGTGAT
GACGGCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig99:570320..579776+

>mRNA_P-littoralis_Contig99.135.1 ID=mRNA_P-littoralis_Contig99.135.1|Name=mRNA_P-littoralis_Contig99.135.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2883bp|location=Sequence derived from alignment at P-littoralis_Contig99:570320..579776+ (Pylaiella littoralis U1_48)
ATGAAAGGCGTCCCCTTGAGCCCTACCAGCGATGGAACGGGGTCGCCGAC
GCTCTTTGACGCGGCGCGCGCAGCGATGTGCCTTCTCAAGGAGGAAGATC
ATGTTTGGACGATCGAAACTTGCATGGAAACCATCAATCTCTTGCGGGCG
CGAAACAACGGTCTAAAGGAGCAGCTGTTGGAGGTTGATACCAACTTCGC
CGACCATGTGGAAGCGAGGCAGCGAAAGATCAGGGAGCTCAACCGGGAGG
TGGAAGGCGCTGCGGCCGTGAAAGCCCAGCTTGAGGCAACGCTGGAGGCC
GAGAGAGGAGACCGCAGGCGGCAAGAAAGGGACCAGCAGCGTCAAAGGGA
CGCGGAGATCCTCGCGTACGAGACCACCATCGAACGTCTGACAGAAGACG
TGGAGAGCTTGCAGCAGTTTTCCGGAGAGAGAAACAAATTCGTCGACAAA
CTCGCAGCACTCGAAGCAGCTAACGCGGGGCTTGTGGACACCCAAGAGAT
GCGGGTGCAATCGTGGAGATGCAAATTGGCAAATTTTGAGGCCGAGAAGG
AACGAGACGTCGCACGTTTGGTGCTCGAGGCAAAAAAGAACATGCGCGAC
GAGGTGGAAATCGCGTTCGGCGAGGAATTTGAGCGCCTCGTAAAGGACAA
CCAGGTGCTGAAAGATAAGCTCAAGCAACAAGACTCCAAAATCCAGATCA
TCCTATCGGAGCTCGAGCACGAGATCGCGGCAAAGGTGGAGCTGAAAACC
GAGCTGGACATCTTGAGGGCGCTAGAGAACAAATCTGCCGGGAAAATCAA
GTACTACATGAGGATGCTGAAGCGCAGCGCCAACGAGCTCGCCCAGCAGT
GCGTAAACGGAGATGGCGAGGAGTGCGCACCATTCAAGGAGTGGTCGGCA
GGTGCTGCGGGTGCTGCCAGAGTGCCTAGAGTACAAACTTGCCACTCCTC
TGGCTTAGAAACGAACATTGTGGGGGCAGGAGCAGGATCGTCAAGAAGAA
CGAAATCAAACTCGAAGAGAAGGCCTGGAACGGCCCCGGCTAAGATTCGC
CGCTGCGGCGGCGGGAGAGGAAGAGTCGGTGGTGAAAACAGAGCAGCCGA
AGCAGGGAAGCAACCGTCTTTTGTCAACATGTTGTCGACTGACGACGAGT
GTTGCGCGCATCAATATAGCTACAGTGGAAGCAACCACCCTACCCCGACC
GGCAGACCAAGCTCGCAGAGAATCAGAGCTCAGACCGCGGAGCGCTCGCG
AGCGCATAGTAACTCCACCAGCAGCAACTGTGGCGGGTGCTTCAGGGTTG
GAGACGCCAAGAAGCATCCCAGAAGGGGGGCTCAATCCGCAGACCGCTCC
CGAACGCGGTCCTCTGGTGCCTACCGTTGTTCTCATCCCTTGACAGTAAC
GCTTCCCCCTCACTACCGAATTTTTACCGGGAGCGATGTCGACACAGAGA
AAACGAACGCTACTGATGTTGAGACCGCAAACAACATCGGCGGTCAGTCG
CAAAGAAACGGAGAATCGAAAGAAAGCAAGGAGGGTGCCGTTACCGTTGT
TGATCAGCACCGACTACAGACGAAGGAAGAAGACGCAGGAAACGAGGGAA
ACCGCAGTGACAACGCAGCCACCATAAACATCGACAGCTGCCGCCTACGG
CAGAGGGGGGACGAAGGAGAGGAAGCGCTGCTTGCCATGCGGAAGAGCCA
CCGCCCACCGATATTGGCTGATCATTCAGTGCGGCGCTCGCGCGGCAGCG
ACATTGTTGATAGTAGTGATGGACAGCAAGCAAAGAAGGACGACACGGCG
GCGGCGGCGGCGGCGGTCGAGAAGGAGACAGCGACGGAGACGGCGAAACT
TACAAGGGATGCGTCCGCCCACCTGGGAGATGAGGTTGCCGAAAAGGAAA
TACGCTCGGCAGCGGCGATGGATGGGGTGGCAGTGCAGTGTTGGCGCGAC
CTCGACGCCTACCTGCAACATCGCGGCGACAGCACCACTCGTCCGGACCG
TCCGGCCACTTGTGGCAGCATGAACCCCGGAAGACCGCCAGCGACGGGCC
ACCGGGCGATGTTTTCCCGGCAGCACCACCAGTACGCCGGCCGAAAGTGT
ACAAGACAAAACTATCACTGCGGCCAATCGGGAGTTGGAGACAGCAGTCA
TTCGAACAATTTGCGCACGATTCGCTATCGACGACCTTGGACGGCTTCGC
CATATGTTAGAGGTGGGGAGAACGTCGGCAGCGGTGGTGGAGAGCAAAAG
TGGTGGGATAGGCTGTGGGGGGGTGGTGATGGTAAGGGCCATGGCGGCGC
GCGCTGCAACGAGGAAGTGGGAGCTCGCGGCGGCAAGCTTTGGGGAGAAC
ACAATGAGAGCCGCGAGCGTGAGTTGTTGGAAACTCTCAGAGTGGCCGAG
CTCGGCGGGAGCGTAACGCAGAACGGGATGAAGGAGGGGCTCGACGAGAG
CGTTTTTCGAAACGGACACGAGAATGACGGTCACCACAGGATCGGGGCTA
CTGCCGCTGCTTCTGCTGCTGATACCGCCGCTGGGGGAGGTGGGGAACAA
GAGCGGCTGCTCTGGACCGTGGACGATAGCCCTGACCTGCGACAACGACA
GCAACAACACTATTACTCTTCTTCCAGGACCGCCAAAACAAGAGCGGCGA
TTGAAAGCACCGACGGCGGCATTCGGAATCGCATTCCCCAAAAGCCGCGC
CCGCAACAGACGGTGCTCGTTCGAGAGAGGCTCGGCGGGGTCGGCACCGG
TGCTCCGACCGCAGCCCGGTCGTCCGAGATTGATATGATGGCCGCCGAGG
AGGCCGGCAAGGCAGCGGCTAAAGCAGCGGTAGCTGCCACCGCTACGCGA
CCAGTAGCAGCACCAATCGCGGTGATGACGGCT
back to top