mRNA_P-littoralis_Contig989.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig989.8.1
Unique NamemRNA_P-littoralis_Contig989.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.310e-63
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 196 bits (499), Expect = 1.860e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Match: A0A452ZBM4_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZBM4_AEGTS)

HSP 1 Score: 197 bits (500), Expect = 2.650e-63
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*GIYL 324
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG  ++L
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGARLFL 108
[Close]
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.650e-63
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
[Close]
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Match: A0A251UP18_HELAN (Histone H4 n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UP18_HELAN)

HSP 1 Score: 196 bits (499), Expect = 3.310e-63
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*GIYLD 327
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG   Y D
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGVCGYYD 109
[Close]
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Match: B7FX68_PHATC (Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FX68_PHATC)

HSP 1 Score: 196 bits (497), Expect = 3.760e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 103
[Close]
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Match: C1MUM2_MICPC (Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1MUM2_MICPC)

HSP 1 Score: 196 bits (497), Expect = 3.760e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Match: A0A067CU13_SAPPC (Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU13_SAPPC)

HSP 1 Score: 196 bits (497), Expect = 3.760e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVI+DSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIKDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 196 bits (497), Expect = 3.760e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Match: A0A7S3RVL2_9SPIT (Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 RepID=A0A7S3RVL2_9SPIT)

HSP 1 Score: 196 bits (497), Expect = 3.880e-63
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig989.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A024G0M5_9STRA1.310e-63100.00Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
H4_SOLLC1.860e-6399.03Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
A0A452ZBM4_AEGTS2.650e-6394.44Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A3L6V663_9STRA2.650e-63100.00Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A251UP18_HELAN3.310e-6394.50Histone H4 n=2 Tax=Helianthus annuus TaxID=4232 Re... [more]
B7FX68_PHATC3.760e-6399.03Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 Rep... [more]
C1MUM2_MICPC3.760e-6399.03Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1M... [more]
A0A067CU13_SAPPC3.760e-6399.03Histone H4 n=5 Tax=Saprolegniaceae TaxID=4764 RepI... [more]
F0W2L9_9STRA3.760e-6399.03Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A7S3RVL2_9SPIT3.880e-6399.03Histone H4 (Fragment) n=2 Tax=Sar TaxID=2698737 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig989contigP-littoralis_Contig989:51730..52061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008863623.1
PFAMsCENP-T_C
Model size332
Max annot lvl2759|Eukaryota
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.68e-64
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size312
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791908.593904-UTR-P-littoralis_Contig989:51729..517491680791908.593904-UTR-P-littoralis_Contig989:51729..51749Pylaiella littoralis U1_48UTRP-littoralis_Contig989 51730..51749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791908.6107566-CDS-P-littoralis_Contig989:51749..520611680791908.6107566-CDS-P-littoralis_Contig989:51749..52061Pylaiella littoralis U1_48CDSP-littoralis_Contig989 51750..52061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig989.8.1prot_P-littoralis_Contig989.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig989 51750..52061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig989.8.1

>prot_P-littoralis_Contig989.8.1 ID=prot_P-littoralis_Contig989.8.1|Name=mRNA_P-littoralis_Contig989.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
back to top

mRNA from alignment at P-littoralis_Contig989:51730..52061-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig989.8.1 ID=mRNA_P-littoralis_Contig989.8.1|Name=mRNA_P-littoralis_Contig989.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=332bp|location=Sequence derived from alignment at P-littoralis_Contig989:51730..52061- (Pylaiella littoralis U1_48)
ATGTCTGGACGCGGAAAGGGCGGGAAGGGTCTGGGCAAGGGCGGCGCCAA
GCGCCACCGCAAGGTACTTCGCGACAACATCCAGGGCATCACCAAGCCCG
CGATCAGGCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGTGTGCTGAAGGTCTTCCTCGAGAACGTCAT
CCGCGATTCGGTCACGTATACCGAGCACGCCCGCCGGAAGACTGTGACCG
CCATGGACGTTGTGTACGCCCTCAAGCGCCAGGGCCGCACTCTCTACGGT
TTCGGCGGCTAGGGTATTTACCTAGATCAACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig989:51730..52061-

>mRNA_P-littoralis_Contig989.8.1 ID=mRNA_P-littoralis_Contig989.8.1|Name=mRNA_P-littoralis_Contig989.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig989:51730..52061- (Pylaiella littoralis U1_48)
ATGTCTGGACGCGGAAAGGGCGGGAAGGGTCTGGGCAAGGGCGGCGCCAA
GCGCCACCGCAAGGTACTTCGCGACAACATCCAGGGCATCACCAAGCCCG
CGATCAGGCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGTGTGCTGAAGGTCTTCCTCGAGAACGTCAT
CCGCGATTCGGTCACGTATACCGAGCACGCCCGCCGGAAGACTGTGACCG
CCATGGACGTTGTGTACGCCCTCAAGCGCCAGGGCCGCACTCTCTACGGT
TTCGGCGGCTAG
back to top