mRNA_P-littoralis_Contig989.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig989.5.1
Unique NamemRNA_P-littoralis_Contig989.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig989.5.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.310e-12
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:   49 AKLEAQAKENRALRDKVKHLEEEVRRIRKD-IRIAADAEGDQGRRLHEALSGE-EPRKLFDKLPEGSLARAVVD 264
            AKL+AQ+K  R LRD ++H+E ++RR R+D + IAAD E  QGRRLHE LSG  + + +F +LPEGSLARAVV+
Sbjct:  200 AKLDAQSKGTRVLRDHIRHMEVQLRRCREDDVVIAADNE--QGRRLHETLSGNPDVKDVFARLPEGSLARAVVE 271
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig989.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFP1_9PHAE2.310e-1258.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig989contigP-littoralis_Contig989:16841..17269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size267
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791908.5450997-CDS-P-littoralis_Contig989:16840..168851680791908.5450997-CDS-P-littoralis_Contig989:16840..16885Pylaiella littoralis U1_48CDSP-littoralis_Contig989 16841..16885 +
1680791908.5602732-CDS-P-littoralis_Contig989:17049..172681680791908.5602732-CDS-P-littoralis_Contig989:17049..17268Pylaiella littoralis U1_48CDSP-littoralis_Contig989 17050..17268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig989.5.1prot_P-littoralis_Contig989.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig989 16841..17268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig989.5.1

>prot_P-littoralis_Contig989.5.1 ID=prot_P-littoralis_Contig989.5.1|Name=mRNA_P-littoralis_Contig989.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
HSKHTNNERLYTIQKVAKLEAQAKENRALRDKVKHLEEEVRRIRKDIRIA
ADAEGDQGRRLHEALSGEEPRKLFDKLPEGSLARAVVD
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mRNA from alignment at P-littoralis_Contig989:16841..17269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig989.5.1 ID=mRNA_P-littoralis_Contig989.5.1|Name=mRNA_P-littoralis_Contig989.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig989:16841..17269+ (Pylaiella littoralis U1_48)
CACAGCAAGCACACAAACAACGAGAGGCTCTATACCATACAGAAGGTGAC
TTTGCATGTGGTGTTTTTATACGCGAGAGATGGGCAGTCGATTTAACGTA
AATATGTAGAATTGTAACATATGGCTTAGGCTCCTTTCACTCGTGCTAAC
ATTTGCACTCGACCTCGGCTCTTTGCCTCACCTATCACCCCGGACCTCAC
AACATCAAGGTTGCGAAGCTCGAGGCGCAGGCCAAGGAGAATCGAGCTCT
ACGTGATAAGGTAAAGCATCTCGAGGAGGAAGTGCGGAGGATTCGCAAGG
ACATCCGGATAGCGGCAGACGCGGAAGGGGACCAGGGTCGTCGGCTCCAC
GAGGCCTTGTCGGGAGAGGAACCGAGGAAGCTGTTCGACAAGCTCCCGGA
GGGCAGCCTGGCGAGGGCGGTGGTGGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig989:16841..17269+

>mRNA_P-littoralis_Contig989.5.1 ID=mRNA_P-littoralis_Contig989.5.1|Name=mRNA_P-littoralis_Contig989.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig989:16841..17269+ (Pylaiella littoralis U1_48)
CACAGCAAGCACACAAACAACGAGAGGCTCTATACCATACAGAAGGTTGC
GAAGCTCGAGGCGCAGGCCAAGGAGAATCGAGCTCTACGTGATAAGGTAA
AGCATCTCGAGGAGGAAGTGCGGAGGATTCGCAAGGACATCCGGATAGCG
GCAGACGCGGAAGGGGACCAGGGTCGTCGGCTCCACGAGGCCTTGTCGGG
AGAGGAACCGAGGAAGCTGTTCGACAAGCTCCCGGAGGGCAGCCTGGCGA
GGGCGGTGGTGGAC
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