mRNA_P-littoralis_Contig989.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig989.17.1
Unique NamemRNA_P-littoralis_Contig989.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig989.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig989contigP-littoralis_Contig989:81631..87335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size145
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791908.3779922-CDS-P-littoralis_Contig989:81630..817101680791908.3779922-CDS-P-littoralis_Contig989:81630..81710Pylaiella littoralis U1_48CDSP-littoralis_Contig989 81631..81710 +
1680791908.39047-CDS-P-littoralis_Contig989:87271..873351680791908.39047-CDS-P-littoralis_Contig989:87271..87335Pylaiella littoralis U1_48CDSP-littoralis_Contig989 87272..87335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig989.17.1prot_P-littoralis_Contig989.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig989 81631..87335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig989.17.1

>prot_P-littoralis_Contig989.17.1 ID=prot_P-littoralis_Contig989.17.1|Name=mRNA_P-littoralis_Contig989.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
LLEHGVSSCCRSVEGTTTTMSRKRTCRTRKSSGSTACSPVALKREHEQ
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mRNA from alignment at P-littoralis_Contig989:81631..87335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig989.17.1 ID=mRNA_P-littoralis_Contig989.17.1|Name=mRNA_P-littoralis_Contig989.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5705bp|location=Sequence derived from alignment at P-littoralis_Contig989:81631..87335+ (Pylaiella littoralis U1_48)
TTGTTGGAGCATGGCGTGAGCAGCTGCTGCCGGTCCGTGGAAGGAACAAC
AACAACAATGTCGCGCAAGAGGACTTGTAGGTGAGAACACGTTTTGACAA
CTGCTGTTCCACCCCGTATATAAGTACCAGTATGGACTATACTAAATAAT
AGTACTGCTTGTACCATGTTGTATCAGTTGTATACATATATCTTCCTTGA
CGGAGACCAAGCCCTCCTACGGCAGTTCTACAGTATCATCATCAACATCT
GGCAATCGGGAAGGGTGCCACAGCAGTGGAAAGATGCTTCGATCAAGGTG
CTGCACAAGAAGAAGGACAAGACGGAATGCGGCAATTACCGAGGCATCTC
CCTTGTGGCCCACGCTGGTAAGGTACTCTTGAAGCTGGTCGCCACCCGGC
TAAGCGATTACTGCGAAAGAGAGGGCATCCTGCCGGAGGAACAGAGCGGA
TTCCGACCAAACCGCTCAACGGTTGACATGATGTTCGTGGTTCGACGCCT
ACACGAGCTTGCACGGAAGAAGTCAACCCCACTGTACGCCTGCTTCATTG
ACCTCACGAAAGCCTACGACTCCGTAGACCGGGAACTACTGTGGTCGGTG
CTCAAGCGGCTCGGAGTGCCCCCCAAGATGCTTGCGGTCACTCGCCAATT
CCACGACGGAATGAGAGCATGCGTACGGATGGACGACGGGAGGTGCTCCG
ACTGGTTTGATGTGGGGCAGGGACTCCGTCAGGGATGCAATCTGGCACCC
CTGCTGTTCAACCTTTTCTTTGCTGCGATGCTCATGGTGGCCTTTGCCGA
GATCAGCAAGGACGCGGAGGTGATGGCGGACATGGCCAAGGTCAAGAGGA
AGGTGACGAAGGGGAAGGGGAGGAACGCCCGACTGGTGGAGGCAGTGAAG
TCCATCTGGAGTATGCTCTACGCCGACGACGCCTGTATTGTATCTCAATC
ACCTGGGAGCCTTGAGAAGATGATGTCGATCATCGTACGTGTGGCCGGGC
GGTTTGAGCTGTTGGTGTCAGAACCCAAGACGGAGACCATGTGTATGCTC
GCGAAAGGGATGGAGGCGTGCTCGTTCACGATCGACGCTGCCGGGATGGT
CTTCAAGCAGAAGAAAGACTTTGTGTATCTCGGGGGTAAGATTTGGGAGG
ACGGCAGCATTGAGGGCGAGATTAACCACCGAGTGCAGCGAGCGCACGCC
TGCTTCCGGCGCAACAGCCAGGCAATGTACGACCGCCCGGGGGCCCCTCT
TCGACTAAAAGTACGACTCCTCCAAGCTGAAGTCGTGGAGACCCTACTCT
ACGGGTGTGTCACATGGAATCTGAAGCCAGCGGAGTACCGCAAGCTTCGG
TCAGCCCACCACTTCTTCCTCCTTCGCTGCATCGGATGGAAAAAGAGGGA
GAGAACAGACCGACCCCTCTCCTACGCCAAAGCCCTGATCACCGCGGGTT
GCAACGAGAGCGTTGAGGCCACACTGCGCAAGCGGCGACTGTGCTTCGCA
GGATTCGTTGCGCGCATGAGAGACGAGAGACTCCCGAAAATTGCTCTCTT
CGGAGAATTGCAGGGGGAGCAAGGTATCTGGGGGGCAAGAGTTTGACTGG
CTGAGGCGAATGCGGGAGGACCTCGAAGCGTTCGACATCGTGGTCGACAA
AAGGAGGGGTGGGAGGCAAGTGCCAAGAGAGCTGACGAGTGGTACGACAG
GGTCGACGAGGGTGCGCGGCGGTTCACGGACGAGTGGCTCAAGAAAGAGG
GAGACCTATCAGAGACACGTCGACGGAAAAGAGAGAGGGACGCGGCTGAG
AGGCAGGCCTTGACGAAAAGAGGGAGAACGGATGGCGGGGGTAAACGAGA
AGAGGAGTACGGGGGGGCACAAGGGCAGCGGGGTAGTGGGGTTGGAGTTG
CACAGCACAAGAAGAAGCAGTCCAATGCCAAGCTACGGGGTGGCCGGAGT
GGAAAACCTGTAGGGCGGAGTGGTGGTGTAGCTGCTGCCAAAGATGTGGG
GCAGAAACAACTGGGTACGGTGGTGCCAGGAGCAGGAGGCATGAGTGCGA
CTGAGGAGAGCAAGCGTGAACAGGCAGACCTCGTGGCAAGACACGTTTGC
GATTGATTGCATGCCTTTTATTTTATTTTTATCACCTTCCCCTCCCCCCC
CCCCCCCGACTTCCGGTACTTCCGATCTTCTTTTCCCTTTTCGTTCCCCT
GCTTCCTCTTTGTTTGGCGGCGGCCTGTTTGTTATGTTTGTGTACGAATG
CACTCCCTCAGTCTTTGTGCCCTCCCTGTATCTTCTTCTTTTTTATTTTA
TTTTTGTCTTTCGTCTGTTGATCATATAGTTACTGGGCCATCGCCCTGGT
TTGCGTCTGCTTTGGTCTGTCATGGCCCTGGGCCCTGGTTCGATGCACGA
AGTACTTCGAAGTATATGGTTATGGTTGAGGTTTGTCTTGGTTATTTTTT
GTTTGTCGGACTGTTTCCAATTTTTGTTTTTCTTTCGAGCCTGTTATTAT
TTTTTCTGTATTTGTTTGGTATCCTGGCCACCACAGATGGTACCCCAACG
GTACCACGTCTGATCTGACTGTGGGTGATCATAGTCCATATATTTTATTT
TTTTATTTTTTTCCTCCTAGCACGATATGTGCCTGGTTTGTGACCACGGG
CTAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAACAATATATAC
GTATACTGGTGTGTATATATATATATATACGCTGGTCCTCCGCTGCTGTC
GTTGCGAGTTGCTGCTGGCTGCTGCTGCTCTATGCCAGGGTATATGCGAT
AATACTACTTGATTGAGCTGTAGAATAGTGGTAGTATACAACAGCAGCAA
CGACAGCAGTTTTTTGTACCGCTGCTGAGCTGCTGTAATCCGCGTACTGC
GTACTTATTCCTATATTAGGCCTTGCGTCACTTGCTCCTTTGTCTCCGTG
TTCTGTGCTGTAAGAAGGACAGGGtTTTTTCCGCACGACGGCGGTGGTAA
TGGTTGTACAGGATAATGGACTGCCTCTTGCAAGAAATATATGGGATACA
ATATAGTGCCTGATGTAAACGAAAACCCGAGATTGTCTGAGATTGTCTGG
GTCGTGTACAGATAACAGCGCGAGAAGTTCTATGCAAGGTCGTCACCGGC
GTCCTGGAAGGCACGGCGTTGTGTGCGCATAAAATCTTGGTGAAAATGCG
TGATATAGCATGAagAAAAAAAAATCCTAAACGTCCGTATTTTGTTGTTT
TTACAACCCACTAATTTCAAGTCAAACGGCAGACTACGATTTTCTGTAAA
TATAATAAAGTATGACGGCAGGTACAGCTGGGTGACATGTAGACCGATCA
GAGACCCCCCACACAGCCGGTCAGCGAGAGTTGTTGTGCCTGTCACAAGA
TCAGTGCTTAACCATGCAGTGCTTGGATATGCCGAGGCCGTGTACCCTCT
CTGTCAATGAGACGATCGTACGAAGTACGAAGTGCCGGGGTATGGCACAG
CAGCACTCATGTATGACATAATGTACTTCGTATGTTTTTTGTGCATTGCT
GGCACTCTACACTTTGATACATAGGAGAGTAACGTAAAATCCAGGTGTCA
TGATACTGGTCCGAGGTCAACCGAAGTCTGCTTGCCCTCTCCGTCTCTGT
CTCACTGTCTATAACATTCAGGCTCATAGCTCATAATGATCAGGAAATGT
GCCCTCGCGTGTGATTTGTACTCCTTCTTGTAGGGTTTTGGATGAAATGA
CCGTAGAATTCAGGCTGAGCCAGCTCAATGACATACTGCAACGTACGGTG
GAAACGATGGGAGGGGATGATGTCATACAGGGAAAGAAGGCGATGGCGAT
ACTGCAGAATTGGTGCGGCGAGAACTGTTCGTTTGAGAAGGTCTTCGGCT
CTGTCCGTGGGATTCTACCGGCCACCGCACCCGGCAGGAATACGCCGGTA
AGCCAATCGTTGCAACTGTGCTATCGTAAACTCTGTTGGTGTATTTTTAC
GATTCCGCTCGTTTAAAGGCCACGAGGCTGGATTTGGTTGGTTGATTGAG
CTGGGTTGATTTGGTTGAGTTGGTTAAATGAAATTGGGTTTGTACAGGAG
TGGCGTTGCGCCAAATACGAAACGGCTTGAATATGTTACGTTAGATTGAG
TCAAGCGTGTAAATATCACGGAGCGGGCGCCCTTCCCAGCGTGGCCATCA
GACATTGTGTTCGCTGTTGCCGAGGTGCTAGTAACTTAAAATGAACCCCA
CCGCGTAGCGCGAATAAGAACGGTGTCAGCGGCAACTGTTGTAATTCGTG
GCTTTGTGTAGACCGCCTACCTGTTCGATAGAATCAATTTATTGGGAATG
ATTATTCCATGTTCTGGGAGGCATATTCGTACAACAGGATTTTGTCGCGA
GGCAGAGCGTTTCGCTGAACCTTTTCTGCCCCTGCCTCCGAACCCTGCCT
CCGAACTGGATCCAGAATCTACCACGGTTGGACCGGTACGCAACGGCGCT
TATCCCACAACGGCTGCGCCACATTTGGGAAGCGTGGTTTGTCGAAACCG
ACGGAAACTGCTTGTGGCGTGCCCTCGCCAAGGCCTTGTGGGATTGCGAC
CAGTTTTGGCCCCATTTGAAGGTTGTGGTTTTAGGATGGACTGCTGTGAA
CGCGGGAGCCCTTGTAGAAGATGGTGGAGTCCTTTTTCGCTGCAAGAAAT
TCTATTCGCAACCCGTCGTCGAGAAGTATTCGTGCCCCGCTGACTCAAGT
GGGCTTACTTGTGATGCGGTCGACAACGCCCTCATGATGGTCCTGCAGTC
CATCCTGGAATTTTGCCCAAATAAAAAGTGGGGCGGAGACCTTACCGCGC
TCTGGACATCTGAAGCGCTAGGCATCACGGTGAAATTGGTTGTTCCTACT
GACATGCAGGCGCGGAAGAAGAACGAGGCAACGGGGGGGCAACCGGGTGG
AGGAACTGGTAGGAACGGGGGCAACCGCGATATCAGTCGCAGCTCTCCGA
GTTCATTCGACGTCGTACACATCCCCGAAGTAGAGGCGGACACAGACTGC
ACGGGATTGTGTCACTTTGCCGCAATCATGACGAAGGACAAGAGCACCCG
TCCGTTTCCACTCGCCGCGGCCGCGCCCTCATTGTTCCCGGTCCACGTGA
GTGTCGAATGGCGCTGGTTTTGGGGCTGGTTTTGTTGTCGTAGGTGGTTG
CTCCGTGATGTAGGGAAAGGATGGCGTCGACCCATTATGAAGTCGTTTTA
TTTTGTGAATGTTATATTGTTTGGTGAGCACTAGCGATTATTTTTGTCCG
CGTAGCTTTTGAGTATTCAATGCACGAAGAAGGCCCAAATAAGCACGACA
AGGTAATCAGACCTTCCGTCGCCCCCCTGACTTCCCATACGTGCAGAATG
TGGACATGGAGGCGGCGGACGCTTCCGAACTAGCTGGAAAAATGGTTTGT
TGGCTTTTTTTTGCAACAGCCGTTATCATGGGAGATAACCATAATCTATC
TTCACCAACACGTCCGTATTGACGGTCCAGCTCGTATTGGATGAGAAATA
TATTATAACAATATGTAGCATGTTCGACGGAGGGCGATTTTGACGGCAAG
TCTGCACAGTTAACCCTGTCATTTACCGTCGTGTGTGTCAGGACAAGGAA
GTCTTCTGGGTCGACGGCCTGCAGCCCAGTGGCGCTGAAGAGAGAACACG
AGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig989:81631..87335+

>mRNA_P-littoralis_Contig989.17.1 ID=mRNA_P-littoralis_Contig989.17.1|Name=mRNA_P-littoralis_Contig989.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig989:81631..87335+ (Pylaiella littoralis U1_48)
TTGTTGGAGCATGGCGTGAGCAGCTGCTGCCGGTCCGTGGAAGGAACAAC
AACAACAATGTCGCGCAAGAGGACTTGTAGGACAAGGAAGTCTTCTGGGT
CGACGGCCTGCAGCCCAGTGGCGCTGAAGAGAGAACACGAGCAG
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