mRNA_P-littoralis_Contig989.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig989.14.1
Unique NamemRNA_P-littoralis_Contig989.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.890e-23
Identity = 62/104 (59.62%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:   34 KKAGDTKKKNKRTESYSSCIYKVLNLAGAPRHRYLQARHAHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKHAVSEGTKTVTKFTSA 345
            KKAGD K+ NKRTESYSS IYKVL           +     +  ++   F      S   TRYNKKA LSSREVQTAVRLM PGELAKHAVSEGTK VTKFTS+
Sbjct:   14 KKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDV-FERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Match: UPI001E1C5C9A (histone H2B-like n=1 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001E1C5C9A)

HSP 1 Score: 96.3 bits (238), Expect = 2.350e-23
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   43 GDTKKKNKRTESYSSCIYKVLNLAGAPRHRYLQARHAHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKHAVSEGTKTVTKFTSA 345
            G  K++  R ESY+  +YKVL     PRHR+L   H +HELV +R   +    SS    YNK++ ++SRE+QTAVRL+ PGELAKHAVSEGTK VTK+TS+
Sbjct:   24 GGKKRRKSRKESYAIYVYKVLKQVH-PRHRHLLQGHGNHELVRERHLRAYRGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.030e-20
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:   34 KKAGDTKKKNKRTESYSSCIYKVLNLAGAPRHRYLQARHAHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKHAVSEGTKTVTKFTSA 345
            KKAGD  KK KRTESYSS IYKVL           +     +  ++   F      +    RY+KKA LSSRE+QT+VRLM PGELAKHAVSEGTK VTKFTS+
Sbjct:   28 KKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDI-FERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 6.040e-20
Identity = 62/110 (56.36%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:   28 PRKKAGDTKKKNKRTESYSSCIYKVLNLA----GAPRHRYLQARHAHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKHAVSEGTKTVTKFTSA 345
            P+K A   KKK KRTESY S IYKVL       G  + R +   ++    V +R  S A       TRYNKK+ LSSRE+QTAVRLM PGELAKHAVSEGTK VTKFTS+
Sbjct:   13 PKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISK-RGMSIMNSFINDVFERIASEAGKL----TRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-18
Identity = 62/110 (56.36%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:   28 PRKKAGDTKKKNKRTESYSSCIYKVLNLA----GAPRHRYLQARHAHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKHAVSEGTKTVTKFTSA 345
            P+K A   KKK KRTESY S IYKVL       G  + R +   ++    V +R  S A       TRYNKK+ LSSRE+QTAVRLM PGELAKHAVSEGTK VTKFTS+
Sbjct:  146 PKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISK-RGMSIMNSFINDVFERIASEAGKL----TRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Match: UPI0018F79EB9 (histone H2B 5-like n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F79EB9)

HSP 1 Score: 83.6 bits (205), Expect = 1.810e-18
Identity = 51/101 (50.50%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:   43 GDTKKKNKRTESYSSCIYKVLNLAGAPRHRYLQARHAHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKHAVSEGTKTVTKFTSA 345
            G  K++  R ESYS  IYK           +L   + HHELV QR F +    +S    Y+K+  +SSRE+QTAVRL+ PGELAKHAVSEGTK VTK+TS+
Sbjct:   25 GSKKRRRSRKESYSIYIYK-----------HLIQGNEHHELVRQRYFRAYAGEASRLAHYSKRHTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 114
[Close]
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.120e-18
Identity = 59/104 (56.73%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:   34 KKAGDTKKKNKRTESYSSCIYKVLNLAGAPRHRYLQARHAHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKHAVSEGTKTVTKFTSA 345
            KKAG  K+  KRTESYSS IYKVL           +     +  ++      A  A   ST YNKKA LSSRE+QTAVRLM PGELAKHAVSEGTK VTKF+SA
Sbjct:   20 KKAGG-KRSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLST-YNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 82.0 bits (201), Expect = 7.080e-18
Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:   34 KKAGDTKKKNKRTESYSSCIYKVLNLAGAPRHRYLQARHAHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKHAVSEGTKTVTKFTS 342
            KKAG   K+NKR E+YSS IYKVL           +     +  ++   F      +S   RYNK++ LSSRE+QTAVRLM PGELAKHAVSEGTK VTKFTS
Sbjct:   14 KKAGS--KRNKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDI-FERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 113
[Close]
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Match: A0A0R3PIH7_ANGCS (Uncharacterized protein n=1 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A0R3PIH7_ANGCS)

HSP 1 Score: 84.0 bits (206), Expect = 8.990e-18
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   40 AGDTKKKNKRTESYSSCIYKVLNLAGAPRHRYLQARHAHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKHAVSEGTKTVTKFTSA 345
            AGD KKK++R ESYS  IY+VL                HHEL+ +RR S           YNK++ +SSRE+QTAVRL+  GELA+HAVSEGTK V KFTS+
Sbjct:  101 AGDKKKKHRRKESYSVYIYRVLKQVHPDTGGDFVEGDVHHELICERRASRLA-------HYNKRSTISSREIQTAVRLIRLGELAQHAVSEGTKAVNKFTSS 195
[Close]
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Match: A0A1D2M1Q8_ORCCI (Histone H2B.3 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2M1Q8_ORCCI)

HSP 1 Score: 81.6 bits (200), Expect = 1.240e-17
Identity = 52/102 (50.98%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:   43 GDTKK-KNKRTESYSSCIYKVLNLAGAPRHRYLQARHAHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKHAVSEGTKTVTKFTSA 345
            GD KK K+KR ESY+  IYKVL          +   H HHEL+ QR F +    +S    YNK+  ++SRE+QTAVRL+ PG + KHAVSEGTK VTK+TS+
Sbjct:   23 GDGKKRKHKRKESYAIYIYKVLKQVHPDTG--VSQSHVHHELLCQRHFRAIAAEASRLAHYNKRTTITSREIQTAVRLLLPG-VGKHAVSEGTKAVTKYTSS 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig989.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI1.890e-2359.62Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
UPI001E1C5C9A2.350e-2353.47histone H2B-like n=1 Tax=Coregonus clupeaformis Ta... [more]
A0A6U0X3U9_9STRA6.030e-2054.81Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA6.040e-2056.36Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA1.200e-1856.36Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
UPI0018F79EB91.810e-1850.50histone H2B 5-like n=1 Tax=Scyliorhinus canicula T... [more]
A0A6U6DWX5_9STRA2.120e-1856.73Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
H2B_OLILU7.080e-1853.40Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A0R3PIH7_ANGCS8.990e-1850.98Uncharacterized protein n=1 Tax=Angiostrongylus co... [more]
A0A1D2M1Q8_ORCCI1.240e-1750.98Histone H2B.3 n=1 Tax=Orchesella cincta TaxID=4870... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig989contigP-littoralis_Contig989:63804..64151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWI8
PFAMsHistone
Model size349
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue3.09e-24
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size348
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791908.7220619-CDS-P-littoralis_Contig989:63803..641511680791908.7220619-CDS-P-littoralis_Contig989:63803..64151Pylaiella littoralis U1_48CDSP-littoralis_Contig989 63804..64151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig989.14.1prot_P-littoralis_Contig989.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig989 63804..64151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig989.14.1

>prot_P-littoralis_Contig989.14.1 ID=prot_P-littoralis_Contig989.14.1|Name=mRNA_P-littoralis_Contig989.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
RPPPRSQQRPRKKAGDTKKKNKRTESYSSCIYKVLNLAGAPRHRYLQARH
AHHELVHQRRFSSACPASSASTRYNKKAALSSREVQTAVRLMPPGELAKH
AVSEGTKTVTKFTSA*
back to top

mRNA from alignment at P-littoralis_Contig989:63804..64151+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig989.14.1 ID=mRNA_P-littoralis_Contig989.14.1|Name=mRNA_P-littoralis_Contig989.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig989:63804..64151+ (Pylaiella littoralis U1_48)
AGACCCCCTCCAAGAAGTCAGCAAAGGCCCCGAAAAAAGGCCGGGGACAC
GAAGAAAAAGAACAAGAGGACCGAGTCATACTCTTCGTGCATCTACAAGG
TGCTTAATTTAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGCGGCAT
GCCCATCATGAACTCGTCCATCAACGACGTTTTTCGAGCGCGTGCCCGGC
GAGTTCGGCAAGCACCCGTTACAACAAGAAGGCGGCCCTCTCCTCCCGCG
AGGTCCAGACCGCCGTGCGCCTCATGCCCCCCGGAGAGCTCGCCAAGCAC
GCGGTTTCCGAGGGAACGAAGACTGTGACGAAGTTCACCTCAGCCTAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig989:63804..64151+

>mRNA_P-littoralis_Contig989.14.1 ID=mRNA_P-littoralis_Contig989.14.1|Name=mRNA_P-littoralis_Contig989.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig989:63804..64151+ (Pylaiella littoralis U1_48)
AGACCCCCTCCAAGAAGTCAGCAAAGGCCCCGAAAAAAGGCCGGGGACAC
GAAGAAAAAGAACAAGAGGACCGAGTCATACTCTTCGTGCATCTACAAGG
TGCTTAATTTAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGCGGCAT
GCCCATCATGAACTCGTCCATCAACGACGTTTTTCGAGCGCGTGCCCGGC
GAGTTCGGCAAGCACCCGTTACAACAAGAAGGCGGCCCTCTCCTCCCGCG
AGGTCCAGACCGCCGTGCGCCTCATGCCCCCCGGAGAGCTCGCCAAGCAC
GCGGTTTCCGAGGGAACGAAGACTGTGACGAAGTTCACCTCAGCCTAA
back to top