mRNA_P-littoralis_Contig989.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig989.11.1
Unique NamemRNA_P-littoralis_Contig989.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig989.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig989contigP-littoralis_Contig989:59372..59827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size426
Hectar predicted targeting categorymitochondrion
Exons2
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791908.3044398-UTR-P-littoralis_Contig989:59371..593801680791908.3044398-UTR-P-littoralis_Contig989:59371..59380Pylaiella littoralis U1_48UTRP-littoralis_Contig989 59372..59380 -
1680791908.343225-UTR-P-littoralis_Contig989:59650..598271680791908.343225-UTR-P-littoralis_Contig989:59650..59827Pylaiella littoralis U1_48UTRP-littoralis_Contig989 59651..59827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791908.3205283-CDS-P-littoralis_Contig989:59380..595381680791908.3205283-CDS-P-littoralis_Contig989:59380..59538Pylaiella littoralis U1_48CDSP-littoralis_Contig989 59381..59538 -
1680791908.3321524-CDS-P-littoralis_Contig989:59568..596501680791908.3321524-CDS-P-littoralis_Contig989:59568..59650Pylaiella littoralis U1_48CDSP-littoralis_Contig989 59569..59650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig989.11.1prot_P-littoralis_Contig989.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig989 59381..59650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig989.11.1

>prot_P-littoralis_Contig989.11.1 ID=prot_P-littoralis_Contig989.11.1|Name=mRNA_P-littoralis_Contig989.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
MSPKYLRFSVANPSVLVLASRHYYTDFSRGARFRVRDNFGGDCIVFFFLP
PPPLNLWKGLNTAIFGLTTFLLAASPCAG*
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mRNA from alignment at P-littoralis_Contig989:59372..59827-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig989.11.1 ID=mRNA_P-littoralis_Contig989.11.1|Name=mRNA_P-littoralis_Contig989.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig989:59372..59827- (Pylaiella littoralis U1_48)
CATACTGTTTCGATCATCCTTTAGTTAGGTTCGTTCGAAAGATGAAGTCT
CAAAGAAGCTGATCTAAAAAAAAAGCAAAAAAAAAAGCCAGTTGTTTATA
CTAAAATGAAGTCAAAATATGCCCATTTTGGCCCATTTAAAGAATTTTGA
TTCCGCCAGATGTCTTCGTTTTAGAGCATGAGTCCCAAGTATCTTCGTTT
TAGTGTGGCAAACCCAAGTGTCTTGGTTTTAGCGTCGCGTCACTATTATA
CTGATTTTAGTAAGGACGGAGACGACATGAATCTTTGAGGTAGGGGGGCT
AGGTTCAGGGTTAGGGATAATTTTGGGGGGGATTGCATTGTTTTTTTTTT
TTTGCCCCCGCCCCCACTCAACCTCTGGAAAGGGTTAAATACGGCCATTT
TTGGCCTGACTACTTTTTTGTTAGCCGCTAGCCCATGCGCAGGGTAGTGC
GCAAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig989:59372..59827-

>mRNA_P-littoralis_Contig989.11.1 ID=mRNA_P-littoralis_Contig989.11.1|Name=mRNA_P-littoralis_Contig989.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig989:59372..59827- (Pylaiella littoralis U1_48)
ATGAGTCCCAAGTATCTTCGTTTTAGTGTGGCAAACCCAAGTGTCTTGGT
TTTAGCGTCGCGTCACTATTATACTGATTTTAGTAGGGGGGCTAGGTTCA
GGGTTAGGGATAATTTTGGGGGGGATTGCATTGTTTTTTTTTTTTTGCCC
CCGCCCCCACTCAACCTCTGGAAAGGGTTAAATACGGCCATTTTTGGCCT
GACTACTTTTTTGTTAGCCGCTAGCCCATGCGCAGGGTAG
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