mRNA_P-littoralis_Contig987.41.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig987.41.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE) HSP 1 Score: 295 bits (756), Expect = 2.300e-89 Identity = 154/300 (51.33%), Postives = 202/300 (67.33%), Query Frame = 3
Query: 9 LALKRKVNTAFSQTRAQMDKGVQGPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVGHIAPQDSTLQLAVRESVCDQYSLLSADVFKGRDERAVPYGSIDELMEALELMSWNTAAATAVRRKTVRNSSSNGVWNGSIGKKGSGQHFNSQSSGKSFGRGYS--GRVMTVHDEMEDEKHEFKKVYNVALNRTDNTVGVQRDPPFYVRFTSLAEKDKRRHEYKGKCLNCASSDHFVRDCDQGFLNDSGMLNPDLGNGTPTEVAARWKRWLERLRQWFRNR 902
L LK K+ ++FSQTR Q+D G+ G +AL+FL+RVL++ LS +P VV LQNL V GTPF EYM+TLR+LVQNA SVGH + QD+ LQLAVR+SVCDQYS ++ DVFKGRD AVPY SI +LM+ALE+++WNT ATAV+R + + G G+ + ++ S+G+ +G+ S RVM +H+EMEDE+ EFKKV+ VA + + G + PFY RF S E+D+ R Y KCLNC HFVR+C F+N S MLNP+LG G P V RW +WL+RLR W R
Sbjct: 538 LDLKAKITSSFSQTRQQLDNGMAGREALNFLVRVLTRTLSMATPQHVVFALQNLEVDAGTPFSEYMNTLRALVQNAMSVGHESAQDNVLQLAVRDSVCDQYSNIAVDVFKGRDLMAVPYDSIRDLMDALEVLAWNTTEATAVKRNVISVQTKRAGQGGGNASAGTTSYASAASAGRMYGKQPSQGARVMNIHEEMEDEEKEFKKVHYVAT-QWEKGKGDESYIPFYTRFDSRKEQDEARQAYGLKCLNCGDQSHFVRECTHPFINKSNMLNPELGQGPPQLVKERWSKWLKRLRDWHEQR 836
BLAST of mRNA_P-littoralis_Contig987.41.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE) HSP 1 Score: 245 bits (626), Expect = 4.300e-73 Identity = 139/308 (45.13%), Postives = 190/308 (61.69%), Query Frame = 3
Query: 3 EVLALKRKVNTAFSQTRAQMDKGVQGPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVGHIAPQDSTLQLAVRESVCDQYSLLSADVFKGRDERAVPYGSIDELMEALELMSWNTAAATAVRRKTVRNSSSNGVWNGSIG----KKGSG--QHFNSQSSGKSFGRGYSGRVMTVHD-EMEDEKHEFKKVYNV-ALNRTDNTVGVQRDPPFYVRFTSLAEKDKRRHEYKGKCLNCASSDHFVRDCDQGFLNDSGMLNPDLGNGTPTEVAARWKRWLERLRQWFRNR 902
+ + + K++ F+ T +M++G G +AL FL L + +S+ SP +V +LQ GTP+ EY++ L+ LVQN R++G + PQD+T+QLAVRESV DQYS+L+A VFKG+++ VP+ +ID LM L AT R + SS+G G G + GSG F S S G+S G GY GRVMTV D + EDE EFK+VY++ A RT++ D PF+ FTS+ EKD+ R + +CLNC S HFVRDCD+G++N S MLN +L + EV ARW RWL RLRQW NR
Sbjct: 240 QTMTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAAPTGTPYSEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKGVVPFDNIDTLMHELRNFEAVKGGATTPTRMMAQVKSSSGWRQGQRGCGGGRTGSGGTNTFRSASPGRSDG-GYGGRVMTVEDMDYEDECAEFKRVYDIHAAPRTNSQAT---DCPFFAWFTSVEEKDRHRQAFGLRCLNCGSEGHFVRDCDKGYINTSNMLNKNLATESKAEVKARWDRWLHRLRQWQSNR 543
BLAST of mRNA_P-littoralis_Contig987.41.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE) HSP 1 Score: 237 bits (604), Expect = 4.290e-72 Identity = 138/312 (44.23%), Postives = 190/312 (60.90%), Query Frame = 3
Query: 9 LALKRKVNTAFSQTRAQMDKGVQGPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVGHIAPQDSTLQLAVRESVCDQYSLLSADVFKGRDERAVPYGSIDELMEALELMSWNTAAATAVRRKTVRNSSSNGVWN-----GSIGKKGSG-------QHFNSQSSGKSFGRGYSGRVMTVHD-EMEDEKHEFKKVYNV-ALNRTDNTVGVQRDPPFYVRFTSLAEKDKRRHEYKGKCLNCASSDHFVRDCDQGFLNDSGMLNPDLGNGTPTEVAARWKRWLERLRQWFRNR 902
+ + K++ F+ T +MD+G G +AL FL L + +S+ SP +V +LQ V GTP+ EY++TL+ LV N R++G + PQD+T+QLAVRESV DQYS+L+A +FKG++ V + +ID LM L AT R+ + SS+G W G G+ GSG S S G+S G GY GRVMTV D + EDE EF++VY++ A RT++ D PF+ FTS+ EKD+ R + +CLNC S HFVRDCD+G++N S MLN +L G+ EV ARW RWL RLRQW +R
Sbjct: 38 ITFREKIDKVFADTSKKMDEGSTGKKALTFLTSALWRVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKELCVVAFDNIDTLMHELRNFEAVKGGATTPTRRMAQVKSSSG-WRQGQRGGGGGRTGSGGTNTRVMTGXRSASPGRSDG-GYGGRVMTVEDMDYEDECAEFQRVYDIHAAPRTNSQAT---DCPFFAWFTSVEEKDRHRRAFGLRCLNCGSEGHFVRDCDKGYINASNMLNKNLATGSKAEVKARWDRWLHRLRQWQAHR 344
BLAST of mRNA_P-littoralis_Contig987.41.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE) HSP 1 Score: 205 bits (521), Expect = 1.560e-60 Identity = 121/299 (40.47%), Postives = 172/299 (57.53%), Query Frame = 3
Query: 3 EVLALKRKVNTAFSQTRAQMDKGVQGPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVGHIAPQDSTLQLAVRESVCDQYSLLSADVFKGRDERAVPYGSIDELMEALELMSWNTAAATAVRRKTVRNSSSNGVWNGSIGKKGSGQHFNSQSSGKSFGRGYSGR-VMTVHD-EMEDEKHEFKKVYNVALN-RTDNTVGVQRDPPFYVRFTSLAEKDKRRHEYKGKCLNCASSDHFVRDCDQGFLNDSGMLNPDLGNGTPTEVAARWKRWLERLRQW 890
+ + + K+ FS T ++++G G +AL FL L + +++ SP VV +LQ V GTP++EY++TL+ L N R++ + PQD+T+QLAVRE V DQYS+L+A V KG++ V + + T V+ + G G G G F S S G+S G GY GR VMTV D + ED+ EFK+VY + + RT++ V D PF+ FTS+ EKD+ R + +CLNC S FVRDC +G++N S MLN +L NG+ EV ARW RWL RL+QW
Sbjct: 5 QTITFREKIGKVFSDTSKKIEEGSTGRKALAFLTSALGRVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQFDNXP------------TRRMAQVKGSSGGRQGQRCDGGGRTGS-GGGNTFRSASPGRSDG-GYGGRRVMTVEDMDYEDKCEEFKRVYGIHSSPRTNSQVN---DCPFFAWFTSVEEKDRHRRAFGSRCLNCGSEGQFVRDCVKGYINASSMLNRNLANGSKAEVKARWDRWLNRLQQW 286
BLAST of mRNA_P-littoralis_Contig987.41.1 vs. uniprot
Match: A0A6H5KNG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG1_9PHAE) HSP 1 Score: 198 bits (504), Expect = 8.750e-57 Identity = 123/306 (40.20%), Postives = 177/306 (57.84%), Query Frame = 3
Query: 12 ALKRKVNTAFSQTRAQMDKGVQGPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVGHIAPQDSTLQLAVRESVCDQYSLLSADVFKGRDERAVPYGSIDELMEALELMSWNTAAATA-VRRKTVRNSSSNGVWNGSI---GKKGSGQHFNSQSSGKSFGRGYSGR--VMTVHDEMEDEKHEFKKVYNVA-----LNRTDNTVGVQRDPPFYVRFTSLAEKDKRRHEYKGKCLNCASSD--HFVRDCDQGFLNDSGMLNPDLGNGTPTEVAARWKRWLERLRQW 890
A K+ + A +Q+ MD G+ GP AL L+R + LSTV+P V+ +LQN V GT FK Y+ L+ LV++ + VG +D TLQ+AV+ V DQY+ L+A VF GR+ +A+PY S++ LMEAL+ M+ NT ATA VR + V + G + S+ G+ G G F+ SG +G +G VMTV + +DE EF +V V+ R D+ DPPFYV+FT+ E+D+ R E+ KCLNC + H R+C +N SG+++PD+ G P V W+RW +RL W
Sbjct: 74 ATKQILVAAVNQSVRAMDSGMSGPDALQLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFA--EDGTLQVAVKAGVTDQYATLTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTATASVRLRGVGSVLPRGQADMSVSSRGRYGGGGSFSGAKSGSLTPQGSAGARAVMTV-AQYDDESREFWQVSQVSRGNKGFGRNDD------DPPFYVQFTNNKERDRARREFGPKCLNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSW 370
BLAST of mRNA_P-littoralis_Contig987.41.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI) HSP 1 Score: 181 bits (460), Expect = 7.010e-52 Identity = 109/253 (43.08%), Postives = 153/253 (60.47%), Query Frame = 3
Query: 60 MDKGVQGPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVGHIAPQDSTLQLAVRESVCDQYSLLSADVFKGRDERAVPYGSIDELMEALELMSWNTAAATAVRRKTVRNSSSNGVWNGSI----GKKGSG--QHFNSQSSGKSFGRGYSGR-VMTVHD-EMEDEKHEFKKVYNVALNRTDNTVGVQRDPPFYVRFTSLAEKDKRRHEYKGKCLNCASSDHFVRDCDQGFL 794
M +G G +AL FL L + +S+ SP +V +LQ V GTP+ EY++TL LV N R++G + PQD+T+QLAVRESV DQYS+L+A VFKG+ VP+ +ID LM+ L AT R++ + S+G G G GSG F S S G+ G GY GR VMTV + + EDE EF++VY++ ++ N+ +D PF+ FTS+ EKD+ R + +CL C S HFVRDCD+G++
Sbjct: 1 MARGSTGREALTFLTSALGRVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLGLVPFDNIDTLMQELRNFEAVKGGATTPTRRSAQVKGSSGGRQGQKRDGGGGTGSGGTNTFRSASPGRLDG-GYGGRRVMTVDEVDCEDECAEFQRVYDIHVSPRTNSQ--MKDCPFFAWFTSVEEKDRHRRAFGSRCLKCGSEGHFVRDCDKGYI 250
BLAST of mRNA_P-littoralis_Contig987.41.1 vs. uniprot
Match: A0A6H5KZQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ9_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.400e-41 Identity = 112/300 (37.33%), Postives = 161/300 (53.67%), Query Frame = 3
Query: 12 ALKRKVNTAFSQTRAQMDKGVQGPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVGHIAPQDSTLQLAVRESVCDQYSLLSADVFKGRDERAVPYGSIDELMEALELMSWNTAAATAVRRKTVRNSSSNGVWNGSIGKKGSGQHFNSQSSGKSFGRGYSGRVMTVHDEMEDEKHEFKKVYNVA-----LNRTDNTVGVQRDPPFYVRFTSLAEKDKRRHEYKGKCLNCASSD--HFVRDCDQGFLNDSGMLNPDLGNGTPTEVAARWKRWLERLRQW 890
A K+ + A +Q+ D G+ GP AL L+R + LSTV+P V+ +LQN V GT FK Y+ L+ LV++ + VG +D TLQ+AV+ V DQY+ +A VF GR+ +A+PY S++ LMEAL+ M+ NT ATA VR GV GS+ +G + S S GR Y G V +D E EF +V V+ R D+ DP F+V+ + E+D+ R E+ K NC + H R+C +N SG+++PD+ G P V W+RW +RL W
Sbjct: 1125 ATKQILVAAVNQSVRATDSGMSGPDALKLLLRAVCSGLSTVTPALVLQQLQNFAVPAGTTFKAYLEDLKVLVESVQMVGFA--EDGTLQVAVKAGVTDQYATCTAPVFHGRNTQALPYDSLESLMEALDDMTDNTTTATASVH--VR-----GV--GSVMPRGQ-----AGMSVSSRGR-YGGGVAQYYD----ESREFWQVSQVSRGNKGFGRNDD------DPNFFVQLSDNQERDRARREFGPKSRNCGVEEPFHLARECPDKLMNVSGLIHPDIAVGDPETVEKNWRRWQQRLCSW 1397
BLAST of mRNA_P-littoralis_Contig987.41.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.010e-34 Identity = 99/245 (40.41%), Postives = 130/245 (53.06%), Query Frame = 3
Query: 78 GPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSTLRSLVQNARSVGHIAPQDSTLQLAVRESVCDQYSLLSADVFKG----RDERAVPYGSIDELMEALELMSWNTAAATAVRRKTVRNSSSNGVWNGSIGKKGSGQHFNSQSSGKSFGRGYSGRVMTVHD-EMEDEKHEFKKVYNV-ALNRTDNTVGVQRDPPFYVRFTSLAEKDKRRHEYKGKCLNCASSDHFVRDCDQGFL 794
G +AL FL L + +S+ SP +V +LQ V GTP+ EY++TL+ LV N R++ + PQD+T+QLAVRESV DQYS+L+A VFKG R+ +AV G D E F S S G+S G GY GRVMTV D + EDE EFK+VY++ A RT++ D PF+ FTS+ EKD+ R + CLNC S HFVR +G L
Sbjct: 459 GKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGRNFKAVKGGGKDSDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------FRSASPGRSDG-GYGGRVMTVEDMDYEDECAEFKRVYDIHAAPRTNSQAT---DCPFFAWFTSVEEKDRHRRAFGLTCLNCGSEGHFVRIVIRGTL 687 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig987.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig987.41.1 >prot_P-littoralis_Contig987.41.1 ID=prot_P-littoralis_Contig987.41.1|Name=mRNA_P-littoralis_Contig987.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=284bp MDKGVQGPQALDFLIRVLSKELSTVSPNAVVSELQNLVVAPGTPFKEYMSback to top mRNA from alignment at P-littoralis_Contig987:85287..86344+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig987.41.1 ID=mRNA_P-littoralis_Contig987.41.1|Name=mRNA_P-littoralis_Contig987.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1058bp|location=Sequence derived from alignment at P-littoralis_Contig987:85287..86344+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig987:85287..86344+ >mRNA_P-littoralis_Contig987.41.1 ID=mRNA_P-littoralis_Contig987.41.1|Name=mRNA_P-littoralis_Contig987.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=852bp|location=Sequence derived from alignment at P-littoralis_Contig987:85287..86344+ (Pylaiella littoralis U1_48)back to top |