mRNA_P-littoralis_Contig985.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig985.12.1
Unique NamemRNA_P-littoralis_Contig985.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig985.12.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.070e-12
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:  109 RTRESRPRPQYHTSAWGARLALLESLRKDNRLHQNSREAKAFRSDFRVP 255
            RTRESRPRP Y+ SAWG RLA +ESLR  + L Q+SREA+AFR+DFRVP
Sbjct:  129 RTRESRPRPDYNKSAWGLRLAQMESLRCSHNLAQHSREARAFRADFRVP 177
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BLAST of mRNA_P-littoralis_Contig985.12.1 vs. uniprot
Match: A0A6H5KEH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.360e-11
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   58 WDDEEDEV-EEFENENGKRTRESRPRPQYHTSAWGARLALLESLRKDNRLHQNSREAKAFRSDFRVP 255
            W DEE+   E+F    G   RE+R RP Y +SAWG RLA LESLR   RL  +SREAKAFRSDFRVP
Sbjct:   39 WSDEEEXXXEDF----GPCDRETRERPDYSSSAWGVRLANLESLRIAGRLVPSSREAKAFRSDFRVP 101
[Close]
BLAST of mRNA_P-littoralis_Contig985.12.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.980e-11
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   58 WDDEEDEV-EEFENENGKRTRESRPRPQYHTSAWGARLALLESLRKDNRLHQNSREAKAFRSDFRVP 255
            W DEE+   E+F    G   RE+R RP Y +SAWG RLA LESLR   RL  +SREAKAFRSDFRVP
Sbjct:   17 WSDEEEXXXEDF----GPCDRETRERPDYSSSAWGVRLANLESLRIAGRLVPSSREAKAFRSDFRVP 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig985.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0H2_9PHAE1.070e-1271.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEH6_9PHAE4.360e-1161.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE5.980e-1161.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig985contigP-littoralis_Contig985:83989..84243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size257
Hectar predicted targeting categoryother localisation
Exons1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791906.4952717-CDS-P-littoralis_Contig985:83988..842431680791906.4952717-CDS-P-littoralis_Contig985:83988..84243Pylaiella littoralis U1_48CDSP-littoralis_Contig985 83989..84243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig985.12.1prot_P-littoralis_Contig985.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig985 83989..84243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig985.12.1

>prot_P-littoralis_Contig985.12.1 ID=prot_P-littoralis_Contig985.12.1|Name=mRNA_P-littoralis_Contig985.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
MSKTFSDLFDDGNVSGGKPWDDEEDEVEEFENENGKRTRESRPRPQYHTS
AWGARLALLESLRKDNRLHQNSREAKAFRSDFRVP
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mRNA from alignment at P-littoralis_Contig985:83989..84243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig985.12.1 ID=mRNA_P-littoralis_Contig985.12.1|Name=mRNA_P-littoralis_Contig985.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig985:83989..84243+ (Pylaiella littoralis U1_48)
ATGAGCAAAACCTTCTCAGACTTGTTCGACGATGGCAACGTGTCGGGAGG
GAAGCCGTGGGATGATGAAGAAGACGAAGTTGAGGAATTCGAAAACGAGA
ACGGCAAGCGCACACGCGAGTCACGGCCACGCCCGCAGTACCACACGTCC
GCCTGGGGCGCGCGATTGGCACTGTTGGAAAGCCTTCGAAAGGACAACCG
TCTTCACCAAAATAGCCGTGAGGCAAAGGCGTTCAGGTCGGACTTCCGTG
TGCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig985:83989..84243+

>mRNA_P-littoralis_Contig985.12.1 ID=mRNA_P-littoralis_Contig985.12.1|Name=mRNA_P-littoralis_Contig985.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig985:83989..84243+ (Pylaiella littoralis U1_48)
ATGAGCAAAACCTTCTCAGACTTGTTCGACGATGGCAACGTGTCGGGAGG
GAAGCCGTGGGATGATGAAGAAGACGAAGTTGAGGAATTCGAAAACGAGA
ACGGCAAGCGCACACGCGAGTCACGGCCACGCCCGCAGTACCACACGTCC
GCCTGGGGCGCGCGATTGGCACTGTTGGAAAGCCTTCGAAAGGACAACCG
TCTTCACCAAAATAGCCGTGAGGCAAAGGCGTTCAGGTCGGACTTCCGTG
TGCCA
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