mRNA_P-littoralis_Contig982.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig982.6.1
Unique NamemRNA_P-littoralis_Contig982.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Match: A0A6H5JDQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.170e-35
Identity = 78/189 (41.27%), Postives = 113/189 (59.79%), Query Frame = 2
Query:  266 VEQAETKASVLQKALRSIKINGAVKIDELLGEASIIDVIRLLCPEASGEYAVQTFTRILEKDDR------------VTSIESRIKNIKINGCGRTTPVADLDTLVEVLWMLPSVASRALRRESVESVFRAMRGGLGLRRQIEQN-----NLEKSRVHQS----------KQHDEPFWFEYSSVEEGLCF 751
            V  AETK + L+KALR++ I+G+V+IDE  G+ SIIDV R+LCPEAS EYA +  TR+LEK+ R               +  RI+ ++IN  G  TP+ D  TLVE++W+LPS A++  RR+S +++ R + G   L  +IEQ      + E+ R +Q           ++ +EPFWFEY+S EE   F
Sbjct:   34 VAHAETKTARLEKALRTVGIHGSVRIDENTGKGSIIDVNRMLCPEASAEYAAKMLTRVLEKEKRDGMERPGQNAQSTIPLSERIEYVRINDKGPVTPICDASTLVEIIWLLPSNAAKEFRRQSAQTITRVLGGDTSLCDEIEQRCDRLQSTEEGRAYQGFLLDQGPAKKQRSEEPFWFEYASDEEKRAF 222          
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 8.810e-34
Identity = 73/134 (54.48%), Postives = 95/134 (70.90%), Query Frame = 2
Query:  266 VEQAETKASVLQKALRSIKINGAVKIDELLGEASIIDVIRLLCPEASGEYAVQTFTRILEKDDRVTSIESRIKNIKINGCGRTTPVADLDTLVEVLWMLPSVASRALRRESVESVFRAMRGGLGLRRQIEQNNL 667
            VE   TKA  L+KALR++ I G+V++DE  G  S IDVI++LC  AS EYA Q   R+LE+DDR  SI+SR+  IKI+G G  +PV D +TLVE++WMLP+ +SR  RR+S E++ R M G L L RQIEQN L
Sbjct:  119 VEGVGTKAVALRKALRAMNIQGSVRVDERSGRVSGIDVIKMLCTGASSEYAAQMLKRVLERDDREPSIKSRVSYIKIDGSGNKSPVTDFNTLVEIIWMLPTGSSREFRRKSAETICRVMGGDLSLCRQIEQNAL 252          
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Match: Q8QN79_ESV1K (EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K)

HSP 1 Score: 137 bits (344), Expect = 2.850e-33
Identity = 80/187 (42.78%), Postives = 110/187 (58.82%), Query Frame = 2
Query:  272 QAETKASVLQKALRSIKINGAVKIDELLGEASIIDVIRLLCPEASGEYAVQTFTRILEKD------------DRVTSIESRIKNIKINGCGRTTPVADLDTLVEVLWMLPSVASRALRRESVESVFRAMRGGLGLRRQIEQN-----NLEKSRVHQSKQHDE----------PFWFEYSSVEEGLCF 751
            Q   K +VLQ ALRSI ING+V+ID+ LG+ASIID  RL+CP AS  YA Q FTR+LEK+               T I  R+  I+ING G  TPV+D  T+VE++W+LPS A++  RR+S E++ R + G + L  +IEQ      + E+ R +QS   D+          P WFEY++ EE   +
Sbjct:  125 QVGIKTAVLQNALRSININGSVRIDDGLGKASIIDTTRLVCPGASSAYAAQMFTRVLEKERDDGGNSFMQDAQHPTPIADRVDYIRINGHGNVTPVSDAKTIVEIIWLLPSGAAKEFRRQSAETICRVLGGDISLCGEIEQRCARLRSTEEGRAYQSFVTDQGPAKKQRAAMPAWFEYATAEEKRAY 311          
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Match: A0A6H5K200_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K200_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 9.070e-29
Identity = 73/181 (40.33%), Postives = 106/181 (58.56%), Query Frame = 2
Query:  290 SVLQKALRSIKINGAVKIDELLGEASIIDVIRLLCPEASGEYAVQTFTRILEKD------------DRVTSIESRIKNIKINGCGRTTPVADLDTLVEVLWMLPSVASRALRRESVESVFRAMRGGLGLRRQIEQN-----NLEKSRVHQSKQHDE----------PFWFEYSSVEEGLCF 751
            +VLQKALRSI ING+V+ID+  G+ SIID  RL+C  A   YA Q FTR+LE++               T I  R+  I+ING G+ TPV+D  T+VE++W+LPS +++  RR+S E++ R + G + L  +IEQ      + E+ R +QS   D+          P WFEY++ EE   +
Sbjct:  131 AVLQKALRSININGSVRIDDGCGKESIIDTTRLVCRGAYSAYAAQMFTRVLEEERNDGGSSFMRGEQTPTPIADRVDYIRINGHGKVTPVSDSKTIVEIIWLLPSGSAKEFRRQSAETICRVLGGDISLCGEIEQRCARLQSTEEGRAYQSFVTDQGPAKKQRAAMPAWFEYATAEEKRAY 311          
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Match: Q6XLT7_9PHYC (FirrV-1-L1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT7_9PHYC)

HSP 1 Score: 118 bits (296), Expect = 3.580e-27
Identity = 61/157 (38.85%), Postives = 95/157 (60.51%), Query Frame = 2
Query:  281 TKASVLQKALRSIKINGAVKIDELLGEASIIDVIRLLCPEASGEYAVQTFTRILEKDDRVTSI------------------ESRIKNIKINGCGRTTPVADLDTLVEVLWMLPSVASRALRRESVESVFRAMRGGLGLRRQIEQNNLEKSRVHQSKQ 697
            TK S++Q+ LRS+ I G++++DE+ G AS IDVIRL+CPE +G YA  T  +I+E+D + T +                    R+K I ING G TTPVAD+ TLVE++W++P  A R  R  S E++ RA+ G L   R+I +++++     + ++
Sbjct:    9 TKTSLIQQTLRSLNIQGSIRVDEVTGLASAIDVIRLICPEKNGWYAANTLQKIIEQDSQETVVPETTVSSPDHSAMIKPPLSERVKYITINGRGNTTPVADVATLVEIIWLIPGSAVRQFRAHSAEALVRALGGDLAHAREIAEHHIKLQETSEGRE 165          
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Match: Q6XLT8_9PHYC (FirrV-1-K1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT8_9PHYC)

HSP 1 Score: 115 bits (287), Expect = 9.210e-26
Identity = 60/148 (40.54%), Postives = 95/148 (64.19%), Query Frame = 2
Query:  281 TKASVLQKALRSIKINGAVKIDELLGEASIIDVIRLLCPEASGEYAVQTFTRILEKD---DRVTS----------------IESRIKNIKINGCGRTTPVADLDTLVEVLWMLPSVASRALRRESVESVFRAMRGGLGLRRQIEQNNL 667
            TK+S++Q+ LRS+ I G++++DE+ G AS IDVIRL+CP+ + +YA     RI+++D   ++VT+                   R+K+IKING G TTPVAD+ TLVE++W++P  A R  R  S E++ RA+ G L   R+I ++++
Sbjct:    9 TKSSLIQQTLRSLNIQGSIRVDEVTGLASAIDVIRLICPDQNEKYASHILKRIIDQDADKEKVTNTVTLSRSEHSATIKPPFSERVKSIKINGKGHTTPVADVATLVEIIWLIPGSAVRQFRAHSAEALVRALGGDLAHAREIAEHHI 156          
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Match: B5LW93_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW93_9PHYC)

HSP 1 Score: 112 bits (281), Expect = 1.200e-24
Identity = 56/133 (42.11%), Postives = 85/133 (63.91%), Query Frame = 2
Query:  269 EQAETKASVLQKALRSIKINGAVKIDELLGEASIIDVIRLLCPEASGEYAVQTFTRILEKDDRVTSIESRIKNIKINGCGRTTPVADLDTLVEVLWMLPSVASRALRRESVESVFRAMRGGLGLRRQIEQNNL 667
            E  ETKASVLQ  LRS+ I G++++DE  G  S+ID+++++CP+    YA  T  R+LE+      +   +K +KING G  TPVAD  T+ E++W+LP  A+R  RR+S E V R + G   L ++IE+ ++
Sbjct:  105 ESVETKASVLQNCLRSVNIIGSIRVDEDTGLGSLIDIVKIVCPDMCKVYAKTTLARVLEEWPH--HVADCVKRLKINGRGHVTPVADAKTIAEIIWLLPGRAAREFRRQSAEIVMRVLGGDTTLCKEIEERSV 235          
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC)

HSP 1 Score: 108 bits (271), Expect = 1.470e-23
Identity = 55/131 (41.98%), Postives = 90/131 (68.70%), Query Frame = 2
Query:  278 ETKASVLQKALRSIKINGAVKIDELLGEASIIDVIRLLCPEASGEYAVQTFTRILEKDDRVTSIESRIKNIKINGCGRTTPVADLDTLVEVLWMLPSVASRALRRESVESVFRAMRGGLGLRRQIEQNNLE 670
            +TKASV++  L+SI I+G +++DE     S+IDV++++CP+  G+YA  T  R+++K   +  + +R+K  KING G  TP++D+ T+V+++W+LP  ASR LRR + ES+ R + G L L+  I +N LE
Sbjct:  132 QTKASVVRNCLKSINIDGRIRVDEDTCLVSLIDVVKIICPDMCGDYAKITLGRLIKK---MRWLSNRVKLTKINGRGHVTPMSDVRTIVKLIWLLPGQASRELRRTAAESMCRIIGGDLRLQATINKNYLE 259          
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Match: Q6XM54_9PHYC (FirrV-1-A33 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM54_9PHYC)

HSP 1 Score: 105 bits (262), Expect = 4.850e-22
Identity = 54/142 (38.03%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  272 QAETKASVLQKALRSIKINGAVKIDELLGEASIIDVIRLLCPEASGEYAVQTFTRILEKDDRVTS-------------IESRIKNIKINGCGRTTPVADLDTLVEVLWMLPSVASRALRRESVESVFRAMRGGLGLRRQIEQ 658
            Q E+K S +Q+ALR++ I G++++DE     S+IDVI+L+CPE S  +A +T + +++ DD+                +  R+K I+ING GR TPVAD  TL+ ++W+LP  A    R +S E + R + G L L ++I+Q
Sbjct:  101 QVESKESCIQRALRALNIQGSIRVDEESRMGSVIDVIKLICPEKSEFHAYKTLSNLIDDDDKCIGNKFKSDDSTIPLRLSERVKKIQINGRGRVTPVADAKTLIYIIWLLPGRAVAHFRAQSAEIIARVLGGDLRLAQEIQQ 242          
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.990e-10
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 MNNIPIDASTGDI*VQSVIKYIMPNLHNSSILKAVHRTLEGYDGPKKSTRLIDGRQMSDAMLGL 192
            +NNI IDAS+GD+ V+S+IK IMPNL  S ILK VHR L   +GPK STRL++GR    A L L
Sbjct:    5 INNIVIDASSGDVAVKSMIKNIMPNLSESGILKTVHRVLGDCNGPKMSTRLMNGRLACAATLEL 68          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig982.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JDQ1_9PHAE1.170e-3541.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJP2_9PHAE8.810e-3454.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QN79_ESV1K2.850e-3342.78EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K[more]
A0A6H5K200_9PHAE9.070e-2940.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q6XLT7_9PHYC3.580e-2738.85FirrV-1-L1 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q6XLT8_9PHYC9.210e-2640.54FirrV-1-K1 n=1 Tax=Feldmannia irregularis virus a ... [more]
B5LW93_9PHYC1.200e-2442.11Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LW94_9PHYC1.470e-2341.98Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM54_9PHYC4.850e-2238.03FirrV-1-A33 n=1 Tax=Feldmannia irregularis virus a... [more]
A0A6H5L5N7_9PHAE2.990e-1059.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig982contigP-littoralis_Contig982:21281..22487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPL9
Model size890
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.11e-29
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Cds size681
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791904.8631601-UTR-P-littoralis_Contig982:21280..214071680791904.8631601-UTR-P-littoralis_Contig982:21280..21407Pylaiella littoralis U1_48UTRP-littoralis_Contig982 21281..21407 +
1680791904.895939-UTR-P-littoralis_Contig982:22405..224871680791904.895939-UTR-P-littoralis_Contig982:22405..22487Pylaiella littoralis U1_48UTRP-littoralis_Contig982 22406..22487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791904.8739583-CDS-P-littoralis_Contig982:21407..219471680791904.8739583-CDS-P-littoralis_Contig982:21407..21947Pylaiella littoralis U1_48CDSP-littoralis_Contig982 21408..21947 +
1680791904.8842316-CDS-P-littoralis_Contig982:22264..224051680791904.8842316-CDS-P-littoralis_Contig982:22264..22405Pylaiella littoralis U1_48CDSP-littoralis_Contig982 22265..22405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig982.6.1prot_P-littoralis_Contig982.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig982 21408..22405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig982.6.1

>prot_P-littoralis_Contig982.6.1 ID=prot_P-littoralis_Contig982.6.1|Name=mRNA_P-littoralis_Contig982.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=227bp
MAQRSPRVSSMADRCLMPCSGCGKGSPLWPNAATPAEGTAGGRRHAVEQA
ETKASVLQKALRSIKINGAVKIDELLGEASIIDVIRLLCPEASGEYAVQT
FTRILEKDDRVTSIESRIKNIKINGCGRTTPVADLDTLVEVLWMLPSVAS
RALRRESVESVFRAMRGGLGLRRQIEQNNLEKSRVHQSKQHDEPFWFEYS
SVEEGLCFPECQDEYNAGRDRHLEIL*
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mRNA from alignment at P-littoralis_Contig982:21281..22487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig982.6.1 ID=mRNA_P-littoralis_Contig982.6.1|Name=mRNA_P-littoralis_Contig982.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1207bp|location=Sequence derived from alignment at P-littoralis_Contig982:21281..22487+ (Pylaiella littoralis U1_48)
ATGAACAACATTCCGATCGACGCTTCCACGGGGGACATTTAGGTGCAAAG CGTGATCAAATACATCATGCCGAACCTACACAACTCGAGCATTCTGAAAG CAGTCCACCGAACCCTCGAGGGCTACGATGGCCCAAAGAAGTCCACGCGT CTCATCGATGGCAGACAGATGTCTGATGCCATGCTCGGGTTGTGGAAAGG GCTCACCCCTCTGGCCAAACGCAGCAACCCCGGCCGAGGGAACAGCAGGT GGAAGAAGGCATGCAGTCGAGCAGGCTGAAACGAAAGCTTCTGTCCTGCA GAAAGCTCTCCGGTCCATCAAGATCAATGGCGCTGTCAAGATCGACGAAC TTTTGGGCGAAGCTAGCATCATTGATGTAATTCGGCTATTGTGTCCCGAG GCCTCTGGTGAATATGCTGTGCAAACGTTTACTCGCATCCTTGAAAAGGA TGATCGTGTGACATCGATTGAGTCCCGTATCAAGAACATCAAAATCAACG GCTGTGGGCGCACTACACCGGTTGCTGACTTGGACACCCTGGTGGAGGTT TTGTGGATGTTGCCAAGTGTTGCCTCGAGAGCGCTCCGTCGTGAATCTGT GGAGTCAGTGTTCCGTGCAATGAGAGGCGGTCTCGGTCTTCGTCGCCAGA TCGAGCAGAACAACCTGGTGTGAGGGTCTGTCGAAGGAGGAGAAGTCATT CGACAAGCTCTGCTTCAGCCGGTGGAGTACAAGGAAGACGGGGAGTCAAC TAGGGTAAAGGAAAGTTCCGTGAGAGGCGCTCTGGCTTCTCTCATCGGAG GAGAACGTGAAGTGAAAACACCCTCGGGTTTCGTTGATATGCACAGCGAT GCCGTGATCGAGATGAAGTATCACAATCGATGGAAGCATGGGCTCGGGCA GGTGCTCGCGGACCAACTTCGTCTGGCAGGCGTCCTCGTATTGAAAACGA GTGGGATGTACGCACGCGCGTTGCCGAGGAAAAGGAGAAAAGTCGTGTTC ACCAATCTAAGCAGCATGACGAGCCATTCTGGTTCGAATACTCATCGGTT GAAGAGGGCCTATGCTTCCCTGAATGTCAGGACGAGTATAACGCTGGGAG AGATCGACATCTTGAAATACTGTAAAGAGCAATTGGCGTCGGTGGGGCGT TTCTACGAACTCGACAAAGACGAGTTCGCGGAAAGGATCAGGGGTGTCCA TTGGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig982:21281..22487+

>mRNA_P-littoralis_Contig982.6.1 ID=mRNA_P-littoralis_Contig982.6.1|Name=mRNA_P-littoralis_Contig982.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=681bp|location=Sequence derived from alignment at P-littoralis_Contig982:21281..22487+ (Pylaiella littoralis U1_48)
ATGGCCCAAAGAAGTCCACGCGTCTCATCGATGGCAGACAGATGTCTGAT
GCCATGCTCGGGTTGTGGAAAGGGCTCACCCCTCTGGCCAAACGCAGCAA
CCCCGGCCGAGGGAACAGCAGGTGGAAGAAGGCATGCAGTCGAGCAGGCT
GAAACGAAAGCTTCTGTCCTGCAGAAAGCTCTCCGGTCCATCAAGATCAA
TGGCGCTGTCAAGATCGACGAACTTTTGGGCGAAGCTAGCATCATTGATG
TAATTCGGCTATTGTGTCCCGAGGCCTCTGGTGAATATGCTGTGCAAACG
TTTACTCGCATCCTTGAAAAGGATGATCGTGTGACATCGATTGAGTCCCG
TATCAAGAACATCAAAATCAACGGCTGTGGGCGCACTACACCGGTTGCTG
ACTTGGACACCCTGGTGGAGGTTTTGTGGATGTTGCCAAGTGTTGCCTCG
AGAGCGCTCCGTCGTGAATCTGTGGAGTCAGTGTTCCGTGCAATGAGAGG
CGGTCTCGGTCTTCGTCGCCAGATCGAGCAGAACAACCTGGAGAAAAGTC
GTGTTCACCAATCTAAGCAGCATGACGAGCCATTCTGGTTCGAATACTCA
TCGGTTGAAGAGGGCCTATGCTTCCCTGAATGTCAGGACGAGTATAACGC
TGGGAGAGATCGACATCTTGAAATACTGTAA
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