mRNA_P-littoralis_Contig982.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig982.4.1
Unique NamemRNA_P-littoralis_Contig982.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig982.4.1 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 5.080e-36
Identity = 72/139 (51.80%), Postives = 94/139 (67.63%), Query Frame = 1 
Query:   25 NATIRVDHASKRASLVDVAKMVLDCGEDQAKAELDKLLGPTADADEDCPRLQINNRGGYTQVANVDFLIEIIWLLPGAIPDDVRRKMCHAVCRLYEGDASLVTDTEARHIAMREASLRAHGQGGKKD---NMPAGFELL 432
            +A IRVD AS + S+ DVAK+VL C +++A+  + KLLG T+D D D  R+QINNRG  T VA V+ L+EI+WLLPG I DDVRR + H VC+   GD  LV ++E RHIAMREASL A+      D   ++P G+  L
Sbjct:    2 DAVIRVDRASNKGSVTDVAKLVLKCDDEEAEKAVRKLLGATSDTDRDFLRVQINNRGRLTLVAGVNMLVEIVWLLPGVIADDVRRDISHKVCKALGGDTRLVEESETRHIAMREASLHANASKVATDQSRDIPPGYSFL 140
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BLAST of mRNA_P-littoralis_Contig982.4.1 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC)

HSP 1 Score: 102 bits (255), Expect = 2.230e-22
Identity = 74/232 (31.90%), Postives = 111/232 (47.84%), Query Frame = 1 
Query:   25 NATIRVDHASKRASLVDVAKMVLDCGEDQAKAEL----DKLLGPTADADEDCPRLQINNRGGYTQVANVDFLIEIIWLLPGAIPDDVRRKMCHAVCRLYEGDASLVTDTEARHIAMR--------EASLRAHGQGGKKDN---MPAGFELLGVRDQQELAKEMVQQFLKGRDQDVRRKALELEERKISLTRKRCDTVIYMYRSLEELDITLDSRAKVHILDTMAQITKPDVS 675
            NATIR+D+A+++ S++DV +MVL C    A        D +L   A+    C  L+IN +G  T VAN   L+EII+ LPG +  + RRK    +CRL  GD +LV + E R   +         +A L    +    D+   MP GF  L    ++ +A E+V                      ++L R+R + +I  Y SL  L + LD R  V I D ++ +TK  +S
Sbjct:   10 NATIRIDNATQKGSVIDVIRMVLRCDASSANTAFRRLKDDMLKSRAEFGAACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTDDDFTGMPVGFRYLEESQRRAVAGEVVA---------------------LALKRQRIEDMIGSYASLRSLGVELDPRTMVEIRDNVSLLTKRKLS 220
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BLAST of mRNA_P-littoralis_Contig982.4.1 vs. uniprot
Match: A0A835YNN1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.410e-10
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 1 
Query:   28 ATIRVDHASKRASLVDVAKMVL-DCGEDQAKAELDKLLGPTADADEDCPRLQINNRGGYTQVANVDFLIEIIWLLPGAIPDDVRRKMCHAVCRLYEGDASLVTDTEARHIAMRE 366
            ATIRVD A+ + S++DV ++V  D     A     +L     +    C  L+IN +G  + VA+   L+EI++ LPG    + RR     VCR+  GD S+V + E RH  +++
Sbjct:    8 ATIRVDAATNKGSVIDVIRLVHPDIESKHASTYFTRLTTEIPEIATQCGLLRINGKGKPSPVADAKTLVEIVFSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEQRHHTLQQ 121
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BLAST of mRNA_P-littoralis_Contig982.4.1 vs. uniprot
Match: B5LWG0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG0_9PHYC)

HSP 1 Score: 53.1 bits (126), Expect = 1.590e-5
Identity = 42/142 (29.58%), Postives = 69/142 (48.59%), Query Frame = 1 
Query:  226 LIEIIWLLPGAIPDDVRRKMCHAVCRLYEGDASLVTDTEARHIAMREASLRAHGQG-----GKKDNMPAGFELLGVRDQQELAKEMVQQFLKGRDQDVRRKALELEERKISLTRKRCDTVIYMYRSLEELDITLDSRAKVHI 636
            L+ I++LLPG I  D RRK    +CR+  GD +L+++ E    A++  S     Q      G  +N          R+ QE  +     FL+   QD       L+ +K +L R+RC  ++  Y+ L ++ + LD R K++I
Sbjct:    3 LVGIVFLLPGKIARDFRRKSAAKICRILGGDLTLISEIEQHRNALQSTSEGRATQAFLLNTGSSENS---------RNMQECWRYSFI-FLELSKQD-------LDCKKQALKRQRCKDMVDQYKILVDIGVKLDDRTKMNI 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig982.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K2U9_9PHAE5.080e-3651.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWM3_9PHYC2.230e-2231.90Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A835YNN1_9STRA1.410e-1034.21Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
B5LWG0_9PHYC1.590e-529.58Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig982contigP-littoralis_Contig982:5429..6121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP49
Model size693
Max annot lvl2880.D8LP49|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.79e-34
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Cds size693
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791904.8286424-CDS-P-littoralis_Contig982:5428..61211680791904.8286424-CDS-P-littoralis_Contig982:5428..6121Pylaiella littoralis U1_48CDSP-littoralis_Contig982 5429..6121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig982.4.1prot_P-littoralis_Contig982.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig982 5429..6121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig982.4.1

>prot_P-littoralis_Contig982.4.1 ID=prot_P-littoralis_Contig982.4.1|Name=mRNA_P-littoralis_Contig982.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=231bp
MATASSLDNATIRVDHASKRASLVDVAKMVLDCGEDQAKAELDKLLGPTA
DADEDCPRLQINNRGGYTQVANVDFLIEIIWLLPGAIPDDVRRKMCHAVC
RLYEGDASLVTDTEARHIAMREASLRAHGQGGKKDNMPAGFELLGVRDQQ
ELAKEMVQQFLKGRDQDVRRKALELEERKISLTRKRCDTVIYMYRSLEEL
DITLDSRAKVHILDTMAQITKPDVSEMVLT*
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mRNA from alignment at P-littoralis_Contig982:5429..6121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig982.4.1 ID=mRNA_P-littoralis_Contig982.4.1|Name=mRNA_P-littoralis_Contig982.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=693bp|location=Sequence derived from alignment at P-littoralis_Contig982:5429..6121+ (Pylaiella littoralis U1_48)
ATGGCCACCGCATCGAGTCTCGACAATGCCACTATTCGCGTCGACCATGC
CTCCAAAAGGGCATCGCTGGTAGATGTTGCAAAGATGGTATTGGACTGTG
GCGAAGACCAAGCCAAAGCTGAGCTGGACAAGCTGCTCGGGCCAACCGCT
GACGCCGACGAAGACTGTCCGAGACTTCAAATCAACAACAGGGGAGGGTA
TACGCAAGTGGCGAACGTTGATTTTCTGATCGAGATCATCTGGTTGCTAC
CGGGCGCAATCCCGGACGACGTTCGCCGGAAGATGTGCCACGCGGTGTGC
CGTTTGTACGAAGGGGATGCAAGCCTGGTGACCGATACTGAGGCGCGTCA
TATCGCTATGCGAGAGGCGAGCCTGCGCGCCCACGGTCAGGGGGGCAAGA
AGGACAACATGCCGGCCGGCTTTGAGCTTTTAGGGGTCCGAGATCAACAA
GAGCTCGCAAAGGAAATGGTGCAACAGTTCCTCAAGGGTCGGGATCAAGA
CGTCCGGCGGAAGGCCCTCGAACTTGAAGAACGGAAGATCTCGCTAACAC
GCAAACGCTGTGACACTGTTATCTATATGTACCGATCCTTAGAGGAGCTT
GATATCACGCTCGATTCGCGCGCTAAAGTTCACATTTTAGACACAATGGC
CCAAATCACCAAACCAGACGTTAGCGAGATGGTGTTAACCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig982:5429..6121+

>mRNA_P-littoralis_Contig982.4.1 ID=mRNA_P-littoralis_Contig982.4.1|Name=mRNA_P-littoralis_Contig982.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=693bp|location=Sequence derived from alignment at P-littoralis_Contig982:5429..6121+ (Pylaiella littoralis U1_48)
ATGGCCACCGCATCGAGTCTCGACAATGCCACTATTCGCGTCGACCATGC
CTCCAAAAGGGCATCGCTGGTAGATGTTGCAAAGATGGTATTGGACTGTG
GCGAAGACCAAGCCAAAGCTGAGCTGGACAAGCTGCTCGGGCCAACCGCT
GACGCCGACGAAGACTGTCCGAGACTTCAAATCAACAACAGGGGAGGGTA
TACGCAAGTGGCGAACGTTGATTTTCTGATCGAGATCATCTGGTTGCTAC
CGGGCGCAATCCCGGACGACGTTCGCCGGAAGATGTGCCACGCGGTGTGC
CGTTTGTACGAAGGGGATGCAAGCCTGGTGACCGATACTGAGGCGCGTCA
TATCGCTATGCGAGAGGCGAGCCTGCGCGCCCACGGTCAGGGGGGCAAGA
AGGACAACATGCCGGCCGGCTTTGAGCTTTTAGGGGTCCGAGATCAACAA
GAGCTCGCAAAGGAAATGGTGCAACAGTTCCTCAAGGGTCGGGATCAAGA
CGTCCGGCGGAAGGCCCTCGAACTTGAAGAACGGAAGATCTCGCTAACAC
GCAAACGCTGTGACACTGTTATCTATATGTACCGATCCTTAGAGGAGCTT
GATATCACGCTCGATTCGCGCGCTAAAGTTCACATTTTAGACACAATGGC
CCAAATCACCAAACCAGACGTTAGCGAGATGGTGTTAACCTAA
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