mRNA_P-littoralis_Contig98.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig98.92.1
Unique NamemRNA_P-littoralis_Contig98.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig98.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig98contigP-littoralis_Contig98:440280..442164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size381
Hectar predicted targeting categoryother localisation
Exons3
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791898.9648225-CDS-P-littoralis_Contig98:440279..4403711680791898.9648225-CDS-P-littoralis_Contig98:440279..440371Pylaiella littoralis U1_48CDSP-littoralis_Contig98 440280..440371 +
1680791898.9767547-CDS-P-littoralis_Contig98:441098..4411441680791898.9767547-CDS-P-littoralis_Contig98:441098..441144Pylaiella littoralis U1_48CDSP-littoralis_Contig98 441099..441144 +
1680791898.9926481-CDS-P-littoralis_Contig98:441922..4421621680791898.9926481-CDS-P-littoralis_Contig98:441922..442162Pylaiella littoralis U1_48CDSP-littoralis_Contig98 441923..442162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig98.92.1prot_P-littoralis_Contig98.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig98 440280..442162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig98.92.1

>prot_P-littoralis_Contig98.92.1 ID=prot_P-littoralis_Contig98.92.1|Name=mRNA_P-littoralis_Contig98.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
EVFVAHLVDHGAAVVIQKWWRKLPWRMRRLRMIYKELLGSRAIVIQRAYR
RRLLRLPSKISRKAIVVRGGKAAAAFSSALRGNGSSIMSRSNEALTRLSA
IAPTPNTGELLARTTRITAKGIGLGL
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mRNA from alignment at P-littoralis_Contig98:440280..442164+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig98.92.1 ID=mRNA_P-littoralis_Contig98.92.1|Name=mRNA_P-littoralis_Contig98.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1885bp|location=Sequence derived from alignment at P-littoralis_Contig98:440280..442164+ (Pylaiella littoralis U1_48)
GAGGTGTTTGTGGCCCACTTGGTCGACCACGGCGCCGCTGTTGTCATCCA
AAAGTGGTGGCGAAAGTTGCCTTGGAGGATGAGACGCTTGAGGTGGGTTT
GGTGTTGGCTTGAGTTCCAGTATCGAGAGATTGACGTTTCCTAGCCAACC
TCTCTGTCCCCACCGCATTCTACACACAAAAGAACACCCCTTACGTGAGG
CTGTAGTTTTGTCGAGATGTTGTCATACGCTAGCCAGAGTGTGCGTTTGC
AGTGGCTATGGCCTGCTCATCAGCGGGGCGGTTTTTCCAAATCCCACAGT
GACATCCATTTTCAGTGAATTCCTTTGGTGTTTTCCTCATTTCGCAAACG
TGTGTGTTGCGAAATCGATCCTTTGTTCGGTGTGCTGACGGGTGAAGGCG
GCCCCGAAGCGTTTTTTATTTCTCGTCTTCTGTTAAGAGATGAGTGGATT
ATTTGTTCGATGGGATCCCACCCACCGTCGCGCGTTCCTTTGTCTGTGCT
TGACGCCAATTTCTACGGGTGCATGCACCCGGGAAAACAATCATCTGACT
TGCGGAGCCTTGCACAACTGTAACTGGCCCCGACCCGCTGTGTGACATCT
TGTGGTCATACGACAGGATCTACGCCTCATCTTCCTTATCTCTCTCTCAT
GTTCTCTCTCTCGTTCTCTCTCTTTCTCTCACACCGAGAGAGCACCGCTA
CGCTGCGCCCCCCCCGTTGTCTGGCTCGCCCACCCCTGCTTCCCGCTCGA
AAACGTTTTACGCGACCGAATACTTATCAACGCCTGTACAACCAACCGTG
TTTTTTGCCCTCGAGACAGGATGATATATAAGGAGCTGCTTGGCAGCCGG
GCGATCGTAATACAAGTGAGATGCGGGCAGTAGGTCTGAAACTCGGGGGT
TGCAACTGATTCAGCCTCTTATTGATATATGGGTACAATGGCTCCGCGAA
AACGAAACGAGCCCGCCTCTCATGCAACGTGCGCGCAAGATAACGTTGAT
TTAGTTAACCTGCCAGCTGCGATCGTCTAGTTAAAAAAAAAGCGGTTTGA
CCGATCGTGCCAAGGTGTTTGACTTGGTGGCTGGAAACGATCCGCCCGTG
CACTCTTAGCGGTGTATTTGTTTTCGTTTCGAACATCTTGTGAACGAAAC
CAATAGTATCATATGATCGAGCTTTGACTGGTCGAAGATGTCACACAGCT
CTCGATGCAGCGATGCACAGCACACAGGAAGCAACCAACACTCTCTGCGT
GTTGGAGGATATGCTAACTATTCACGGACGCCCTCCTCCAGTTCCTGGGC
AGACTTGCAAAGTACAGCCAGCGCTAAAGGGCATTGCCTATAATCTCTTA
CGGCCCACCAAAGAAGCCGCCGTCGTCTCAGGTGTCTACTTGTTAACCAC
TTCCATGCACGTACACTGCCTGCTACTGCTAGTACTTTCAGGGACTAAGA
ATTCTGGTTCTCTGACTTCCTCACCTGGTCGTCTCCTCAACTAAATTTTC
CTCCATTCGTTGTCGCATCACGTTCATGCCCACTTCCCTCCCTTAATCAC
ATGTGCTTGTCCCCCCATTGCCCATTCCCGCCCCCCCCTCTTTTGTCGTG
CCTCTGCCTCCTCTCCCCCCACTCTGTGACCGTGAAAAACTAGCGGGCGT
ACCGCAGACGATTGCTGAGGCTTCCGTCGAAGATAAGCAGGAAGGCGATC
GTAGTCCGGGGTGGGAAGGCGGCAGCCGCGTTTTCCTCAGCTCTACGTGG
CAACGGCAGTAGCATCATGAGCCGCAGCAACGAAGCTCTGACGAGGCTAA
GCGCTATTGCTCCTACACCAAACACTGGGGAGCTTCTCGCTAGAACTACG
AGGATAACGGCCAAAGGGATAGGGCTGGGGTTGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig98:440280..442164+

>mRNA_P-littoralis_Contig98.92.1 ID=mRNA_P-littoralis_Contig98.92.1|Name=mRNA_P-littoralis_Contig98.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig98:440280..442164+ (Pylaiella littoralis U1_48)
GAGGTGTTTGTGGCCCACTTGGTCGACCACGGCGCCGCTGTTGTCATCCA
AAAGTGGTGGCGAAAGTTGCCTTGGAGGATGAGACGCTTGAGGATGATAT
ATAAGGAGCTGCTTGGCAGCCGGGCGATCGTAATACAACGGGCGTACCGC
AGACGATTGCTGAGGCTTCCGTCGAAGATAAGCAGGAAGGCGATCGTAGT
CCGGGGTGGGAAGGCGGCAGCCGCGTTTTCCTCAGCTCTACGTGGCAACG
GCAGTAGCATCATGAGCCGCAGCAACGAAGCTCTGACGAGGCTAAGCGCT
ATTGCTCCTACACCAAACACTGGGGAGCTTCTCGCTAGAACTACGAGGAT
AACGGCCAAAGGGATAGGGCTGGGGTTG
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