mRNA_P-littoralis_Contig98.91.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig98.91.1
Unique NamemRNA_P-littoralis_Contig98.91.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig98.91.1 vs. uniprot
Match: D8LT39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT39_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.370e-58
Identity = 115/194 (59.28%), Postives = 139/194 (71.65%), Query Frame = 1 
Query:    1 KTLPLSFLKNYGYLRESQQRGLERMTRIVRKLAAVARQRAWDRWRKLVVDSRPASHSAATASAATKTTGSALGAAVARGFMARRRVTEMRRQRHEAAXXXXXXXXXXXXXXXVKVLAASRTVASCLIANAAARRRERARRARAAVAKVERSYIARMARQRGWREVALYRKEHAGAGLIQRWTRGALVRRRAPLV 582
            +TLPLS+LK+ GYL E+Q+RGLE+ T IV+++A +A+ RAW +WR+L V  R A   A T       TG+ L AAV RG++ARRRV  +RR+R +AA               VKV AASR VASCLIANA ARRRER R  RAAVA VER+YIAR AR++GWRE+ LYRKEHA AG+IQRWTRG LVRRR PLV
Sbjct:    6 RTLPLSYLKDIGYLGEAQRRGLEKTTNIVKRVATIAKLRAWQKWRQLGVPKRSAGKKATT-------TGNILCAAVTRGYLARRRVAMIRRERAKAAAQRAELKRSLLQRRLVKVSAASRIVASCLIANAWARRRERRRLVRAAVAMVERNYIARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPLV 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig98.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT39_ECTSI1.370e-5859.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig98contigP-littoralis_Contig98:437734..439615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size606
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_004040.1
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791901.788383-CDS-P-littoralis_Contig98:437733..4378611680791901.788383-CDS-P-littoralis_Contig98:437733..437861Pylaiella littoralis U1_48CDSP-littoralis_Contig98 437734..437861 +
1680791901.8063354-CDS-P-littoralis_Contig98:438528..4388411680791901.8063354-CDS-P-littoralis_Contig98:438528..438841Pylaiella littoralis U1_48CDSP-littoralis_Contig98 438529..438841 +
1680791901.8238733-CDS-P-littoralis_Contig98:439450..4396151680791901.8238733-CDS-P-littoralis_Contig98:439450..439615Pylaiella littoralis U1_48CDSP-littoralis_Contig98 439451..439615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig98.91.1prot_P-littoralis_Contig98.91.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig98 437734..439615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig98.91.1

>prot_P-littoralis_Contig98.91.1 ID=prot_P-littoralis_Contig98.91.1|Name=mRNA_P-littoralis_Contig98.91.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=202bp
KTLPLSFLKNYGYLRESQQRGLERMTRIVRKLAAVARQRAWDRWRKLVVD
SRPASHSAATASAATKTTGSALGAAVARGFMARRRVTEMRRQRHEAAARK
AAHKRALLQRRLVKVLAASRTVASCLIANAAARRRERARRARAAVAKVER
SYIARMARQRGWREVALYRKEHAGAGLIQRWTRGALVRRRAPLVRKETWR
L*
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mRNA from alignment at P-littoralis_Contig98:437734..439615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig98.91.1 ID=mRNA_P-littoralis_Contig98.91.1|Name=mRNA_P-littoralis_Contig98.91.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1882bp|location=Sequence derived from alignment at P-littoralis_Contig98:437734..439615+ (Pylaiella littoralis U1_48)
AAGACCTTGCCGCTGAGCTTTCTCAAAAACTACGGGTACCTACGAGAGTC
GCAGCAGAGAGGACTGGAGCGTATGACGAGAATTGTGAGGAAGCTGGCCG
CGGTCGCTCGGCAGCGCGCATGGGACAGGTGGGGGAGGAAACATTCTCTG
ATTAGGCCTGATTAGGATCCGGCAAAGATGTATCACTTCAATTTCGCATT
TAGCTGGTGCCGCTAGTGGTTTCGATGAATTGCTTTGGAACGTTCTTATT
GTTTCGGCCAAGCACCTATCTTATTTTGACCTTCGTGTCCCACCACCGAG
GGATGGGCAGAATCGTAGTGTGAGAGGAACATGCGGGACTTTGTAAATCA
GAGGCTTCTCTCCTTCTTGTTTGAACTCGATGGAACTCAAATCCAGGGGA
GCAGGACAGGGATTCTACGTCTAATCCAACTTTAATCCACTTCTTATCTT
CTCCTGCACTAGCTTTGCGCATTTTGGCTCGTCATACATGTTTGGTTCCG
TGTCCGATTTCTTCCAAGCCTGAAATACAGAAAGTTGAACCCATTCCACA
CTCACCGCGGGGACGACTCAACGACAATAATACACTTTTATGCTGCTTGA
TTGTGCTGTATGCAAAATATGTTGTTGGAAGAAGCCCCGACAAAAAACAA
TTTCTGCTACCAACCGATCAAACCATTTCGACCACTTCCCAAAGGCGAGC
AAATTACGAGCGTTTTCGCGCGTTGGCGTGTACCTCTCGTATTGACTCTT
TCCCGTTTCCGTTTGTGTTTTCCCTTGCGTTTATGGTATTCTTAGGTGGC
GTAAGCTTGTGGTAGATTCCAGACCGGCCTCGCACTCCGCAGCCACCGCC
TCTGCAGCCACCAAGACCACCGGCAGCGCCCTCGGCGCCGCTGTCGCGAG
GGGCTTTATGGCCAGGCGGCGCGTCACTGAGATGCGTCGACAAAGGCACG
AGGCGGCCGCCCGAAAGGCGGCGCACAAGCGGGCCCTGTTGCAACGTCGC
TTGGTTAAGGTGTTGGCAGCGTCGAGGACTGTGGCCTCATGCCTGATCGC
GAACGCCGCGGCTCGGAGGCGGGAGAGGGCTCGGCGGGCCCGGGCCGCGG
TGGCCAAGGTAAGGAAGACAGAGGCAGGGGCATTATGAAAAAGATTGAGA
GACGAAATATTTGTTTGCATATCGTGCTTATGTCTTTCAGGACGTCTAGC
AGGGGGCTATGGGCAACGGTCTGGTGTGCTGGGATCGCACTCTTTTGCCG
ATGGTCGCGGACTTGTTAAAGTGACAAAGTTTAACCCGATCATGTCGAGG
ATGGTGCTTTCGCCGGGATGGGTCAGGGGCTAACAAGGTTGAGCAGCTGA
AAGTTCATCGTTATCTAGACGTGCTATGCGATGTGTCAGACTAGACCGTA
CATGACTTCAAGTATGTGCTCCAGGGGGGGGTGGGTGACCTCGCCGCTTG
GGTAGGCTAAGAAAGCTCTCTGTGCATCCGTACGGCCATGCCGCAAGCCA
CGTGCACAGAAGCATTGTTCCACAGGGCCAAGTTTGCGCCGAAAAGCAGG
TCGCGGCTATAGATTAAAAGCTGGTAGTGCACCTGCGAACGTTACGATCT
GGCTGCTGCGACTGGCGGCCTAGACCAAGCCAGAAAAACAACGATTGCGT
CGATGGCCTCCCTTGCTCTTCTCCTTGGCTGCTAAATCAACGCCTGGTGG
ATGTGAACTATGAATAGGTCGAGCGCAGTTACATCGCCCGTATGGCCAGG
CAGCGGGGTTGGCGGGAGGTCGCACTTTACAGAAAGGAGCATGCCGGGGC
GGGGCTGATACAGCGCTGGACTCGGGGGGCGCTTGTAAGGCGACGAGCCC
CGCTGGTGAGGAAGGAGACATGGCGTTTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig98:437734..439615+

>mRNA_P-littoralis_Contig98.91.1 ID=mRNA_P-littoralis_Contig98.91.1|Name=mRNA_P-littoralis_Contig98.91.1|organism=Pylaiella littoralis U1_48|type=CDS|length=606bp|location=Sequence derived from alignment at P-littoralis_Contig98:437734..439615+ (Pylaiella littoralis U1_48)
AAGACCTTGCCGCTGAGCTTTCTCAAAAACTACGGGTACCTACGAGAGTC
GCAGCAGAGAGGACTGGAGCGTATGACGAGAATTGTGAGGAAGCTGGCCG
CGGTCGCTCGGCAGCGCGCATGGGACAGGTGGCGTAAGCTTGTGGTAGAT
TCCAGACCGGCCTCGCACTCCGCAGCCACCGCCTCTGCAGCCACCAAGAC
CACCGGCAGCGCCCTCGGCGCCGCTGTCGCGAGGGGCTTTATGGCCAGGC
GGCGCGTCACTGAGATGCGTCGACAAAGGCACGAGGCGGCCGCCCGAAAG
GCGGCGCACAAGCGGGCCCTGTTGCAACGTCGCTTGGTTAAGGTGTTGGC
AGCGTCGAGGACTGTGGCCTCATGCCTGATCGCGAACGCCGCGGCTCGGA
GGCGGGAGAGGGCTCGGCGGGCCCGGGCCGCGGTGGCCAAGGTCGAGCGC
AGTTACATCGCCCGTATGGCCAGGCAGCGGGGTTGGCGGGAGGTCGCACT
TTACAGAAAGGAGCATGCCGGGGCGGGGCTGATACAGCGCTGGACTCGGG
GGGCGCTTGTAAGGCGACGAGCCCCGCTGGTGAGGAAGGAGACATGGCGT
TTGTGA
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