mRNA_P-littoralis_Contig98.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig98.17.1
Unique NamemRNA_P-littoralis_Contig98.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig98.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig98contigP-littoralis_Contig98:72741..74105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size358
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791899.3497422-UTR-P-littoralis_Contig98:72740..728021680791899.3497422-UTR-P-littoralis_Contig98:72740..72802Pylaiella littoralis U1_48UTRP-littoralis_Contig98 72741..72802 -
1680791899.3616889-UTR-P-littoralis_Contig98:73810..738591680791899.3616889-UTR-P-littoralis_Contig98:73810..73859Pylaiella littoralis U1_48UTRP-littoralis_Contig98 73811..73859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791899.3765454-CDS-P-littoralis_Contig98:73859..741051680791899.3765454-CDS-P-littoralis_Contig98:73859..74105Pylaiella littoralis U1_48CDSP-littoralis_Contig98 73860..74105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig98.17.1prot_P-littoralis_Contig98.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig98 73860..74105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig98.17.1

>prot_P-littoralis_Contig98.17.1 ID=prot_P-littoralis_Contig98.17.1|Name=mRNA_P-littoralis_Contig98.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
WDRLGKKGVYRRLGRQRPHRVWWLAFCGEGNPAPDVSPPRDFDERVRMGL
LVAGEDAVDEDRSAAAHEKETCVWRFRQSTR*
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mRNA from alignment at P-littoralis_Contig98:72741..74105-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig98.17.1 ID=mRNA_P-littoralis_Contig98.17.1|Name=mRNA_P-littoralis_Contig98.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1365bp|location=Sequence derived from alignment at P-littoralis_Contig98:72741..74105- (Pylaiella littoralis U1_48)
TGGGACAGACTAGGGAAAAAGGGCGTGTATCGACGCCTTGGTAGACAGAG
ACCACATAGGGTTTGGTGGCTTGCGTTTTGTGGGGAAGGGAACCCTGCCC
CAGATGTTAGCCCTCCACGGGACTTCGACGAAAGGGTTAGGATGGGATTG
CTGGTTGCTGGAGAAGATGCCGTAGATGAGGATCGCAGTGCCGCTGCTCA
TGAGAAGGAGACGTGCGTCTGGCGGTTTCGCCAGAGCACGAGATGAGGAA
GGCTGCTGCTGCTGGGGAGGAAGTGACCGATAAAGTTCGCCAAAGGTGCG
GTCCTTCGAAATGGTCCATTTTTTGTGTATGATTGATAAGTCTGTCCTGC
GTTGGCAATGGTGCCTTGATGTTACGCTTTCGTGTCCGTAATTTGGTTAA
TTGTAGAGCTTTCCCTCTAATAGCAAGTACTTGTAGCGAGAGACAGCGAG
AGACATTGCCGTATGATAGGCTTAGTAAAATACGACACCTGCTGAAGCGA
TTTAAAATCACAGATGCTCCACACCGAAGAGAGCATCACCATCAAACGAT
ACGTTTACTCTCGATGCGTTTCCAACACTCCCTTTACGGCACCTACACAT
GTAATTAATCGTGCTTTATAAATCGGTCCAGGGGGGTCCGTCGTATCTTA
CGGCACCCACGGAACACACGCGTCACGCTGCCACACATGCAGAGGAACGG
GGGTTCGATTCCCGGTGAATGTGTTCCTTTACTACTTTGAAAGCAGCTAT
GCTGCTAGTAAAAGCAGATTCGGCTTCGCCGACGAGGGTAGGGACCGCGG
ATCCCTGCTCGCGAGAAAAAATCTCACGTATGTACCGCAGAAGGAAGGTG
GGGATAACTCCTCCTGTGTTGACCTTCTTCCTGTGTGACCCCGTCGATGG
GCCTAGCCTGTAGTTTGAACCGCAGGGTGCAGACTAGTGTGCCAGAGAAT
ATGGGTTGACAACACACACACACCACGCTGTAGAGCTGTATTCTGCTGTA
CAGCTGTATTCAACTGTACTGCTGCTGCTTTACTGCTGCTGCTGCTGCTG
CTGCTGCGCTGCTTATTCTGCTGTACTGCTGCTGCTGGTACTTCGCTGCT
GTTGCTGCTGTACTGCTGCTGCTGGGATGTGTAATGATGTATCATCTCGA
AGTATCATACTCTCACTCGAGACGGAAAGCATAGCAGTGGCACCGTTACA
ACAACACAAGAACAGAAGCACAGCAAGACAAGAGCGTTATGTGTGCGGCA
GGCTGCGGCGTGATGTGTAAATGCTGTGATGCGATATTTTAATACGAAAA
CAGGTCATATTGTCATCACCTACAGGCGTCAACAACAGTAGTACAGCCGA
TCGTGGGAACGGACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig98:72741..74105-

>mRNA_P-littoralis_Contig98.17.1 ID=mRNA_P-littoralis_Contig98.17.1|Name=mRNA_P-littoralis_Contig98.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig98:72741..74105- (Pylaiella littoralis U1_48)
TGGGACAGACTAGGGAAAAAGGGCGTGTATCGACGCCTTGGTAGACAGAG
ACCACATAGGGTTTGGTGGCTTGCGTTTTGTGGGGAAGGGAACCCTGCCC
CAGATGTTAGCCCTCCACGGGACTTCGACGAAAGGGTTAGGATGGGATTG
CTGGTTGCTGGAGAAGATGCCGTAGATGAGGATCGCAGTGCCGCTGCTCA
TGAGAAGGAGACGTGCGTCTGGCGGTTTCGCCAGAGCACGAGATGA
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