mRNA_P-littoralis_Contig98.124.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig98.124.1
Unique NamemRNA_P-littoralis_Contig98.124.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 8.570e-23
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 1
Query:   19 FTNPLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGLTVTPRRPRRSCLANDSVDLLVYLR 222
            F NPLD WRK QLE+PLLAALARRVLAIPSSQAQSER+FS AGLTVTP R R   L +++V+LLVYLR
Sbjct:  480 FNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSR---LLDENVELLVYLR 544          
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.030e-14
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    4 DKTGA--FTNPLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGLTVTPRRPRRSCLANDSVDLLVYLR 222
            DK GA  + +PLDWWR    +FP LA LARRVLAIP++QA+SER+FS AG  VT  R     LA  +V+LLV LR
Sbjct:  213 DKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNN---LAPTTVELLVLLR 284          
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Match: UPI0018AC93B5 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=UPI0018AC93B5)

HSP 1 Score: 72.8 bits (177), Expect = 2.590e-13
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   22 TNPLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGLTVTPRRPRRSCLANDSVDLLVYL 219
            TNPL+WW++++L FPL+A LA++ L IP++ + SER FS +G  +T +R   SCL  D+VD LV+L
Sbjct:  369 TNPLEWWKQHELNFPLVARLAKKYLCIPATSSSSERAFSASGNIITCKR---SCLKPDTVDQLVFL 431          
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Match: UPI001B88B12F (E3 SUMO-protein ligase ZBED1-like n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88B12F)

HSP 1 Score: 72.8 bits (177), Expect = 2.700e-13
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   25 NPLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGLTVTPRRPRRSCLANDSVDLLVYL 219
            NP DWWR N+  +P LA LARRVL++P++   SER+FSVAG TVT  R   + L +DSVD L++L
Sbjct:  410 NPFDWWRLNKTVYPTLAVLARRVLSVPATSVLSERVFSVAGGTVTKLR---ASLDSDSVDKLIFL 471          
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.070e-13
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   28 PLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGLTVTPRRPRRSCLANDSVDLLVYLR 222
            PL+WWR    E+P LA+LARRVL IP+ QAQSER+FS AGL VT  R R   +  ++V L+V+LR
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRAR---MDPENVGLMVFLR 541          
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Match: UPI00106AD7CF (zinc finger BED domain-containing protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AD7CF)

HSP 1 Score: 70.1 bits (170), Expect = 2.340e-12
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   25 NPLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGLTVTPRRPRRSCLANDSVDLLVYL 219
            NPL+WWR+N+ EFPLL+ L ++ L I +S + SER+FS AGL  TP R     L  + VD+LV+L
Sbjct:  375 NPLEWWRRNEREFPLLSQLGKKYLCIQASSSPSERLFSKAGLIATPARAN---LKPEKVDMLVFL 436          
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Match: UPI001470A045 (zinc finger BED domain-containing protein 1-like isoform X1 n=2 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001470A045)

HSP 1 Score: 68.2 bits (165), Expect = 2.680e-12
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   13 GAFTNPLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGLTVTPRRPRRSCLANDSVDLLVYL 219
            G   NPL+WWR N+ E+PLLA LA+R L +P +   SER+FS AG  +T +R   SCL  D V+ L++L
Sbjct:  135 GLNDNPLNWWRSNEKEYPLLACLAKRYLCVPGTSIASERVFSTAG-DITAKR---SCLTPDHVNELLFL 199          
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Match: UPI000EAB1B8F (zinc finger BED domain-containing protein 1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1B8F)

HSP 1 Score: 67.4 bits (163), Expect = 2.730e-12
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   22 TNPLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGLTVTPRRPRRSCLANDSVDLLVYL 219
            TN + WW+ N + FPLLAA+AR +LAIP++Q  SER+FS AG  V  +R R   L +++V++L +L
Sbjct:  101 TNVISWWKANIVRFPLLAAVARNLLAIPATQVTSERLFSTAGNIVNEKRSR---LCSENVEMLSFL 163          
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Match: A0A820KUN0_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820KUN0_9BILA)

HSP 1 Score: 66.2 bits (160), Expect = 3.010e-12
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    4 DKTGAFTNPLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGLTVTPRRPRRSCLANDSVDLLVYLR 222
            DKT    NPLD+WR+NQL FP L+ LARR+ +IP++ A  ER FS AG+ +  RR     L    VD ++++R
Sbjct:   47 DKTSLRQNPLDFWRENQLSFPRLSKLARRIHSIPATIATVERQFSGAGVVINERRTN---LKPSQVDNILFIR 116          
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Match: UPI000904AA09 (zinc finger BED domain-containing protein 1-like n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000904AA09)

HSP 1 Score: 69.3 bits (168), Expect = 4.490e-12
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   25 NPLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGLTVTPRRPRRSCLANDSVDLLVYL 219
            NPLDWWRK+Q+ FP L+ +A++ L IP++++ SER+FS  G  VT  R   SCL  D V++LV+L
Sbjct:  431 NPLDWWRKHQVNFPTLSKVAKKYLCIPATRSPSERVFSSGGNIVTCLR---SCLKPDMVNMLVFL 492          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig98.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI8.570e-2376.47Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JWI1_9PHAE3.030e-1457.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI0018AC93B52.590e-1350.00E3 SUMO-protein ligase ZBED1-like n=1 Tax=Kryptole... [more]
UPI001B88B12F2.700e-1355.38E3 SUMO-protein ligase ZBED1-like n=2 Tax=Gigantop... [more]
A0A6H5JHP9_9PHAE7.070e-1356.92Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UPI00106AD7CF2.340e-1250.77zinc finger BED domain-containing protein 1-like n... [more]
UPI001470A0452.680e-1249.28zinc finger BED domain-containing protein 1-like i... [more]
UPI000EAB1B8F2.730e-1248.48zinc finger BED domain-containing protein 1-like n... [more]
A0A820KUN0_9BILA3.010e-1246.58Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
UPI000904AA094.490e-1250.77zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig98contigP-littoralis_Contig98:575212..575433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5Z0
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size222
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.76e-26
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size222
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791903.1395717-CDS-P-littoralis_Contig98:575211..5754331680791903.1395717-CDS-P-littoralis_Contig98:575211..575433Pylaiella littoralis U1_48CDSP-littoralis_Contig98 575212..575433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig98.124.1prot_P-littoralis_Contig98.124.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig98 575212..575433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig98.124.1

>prot_P-littoralis_Contig98.124.1 ID=prot_P-littoralis_Contig98.124.1|Name=mRNA_P-littoralis_Contig98.124.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
RDKTGAFTNPLDWWRKNQLEFPLLAALARRVLAIPSSQAQSERMFSVAGL
TVTPRRPRRSCLANDSVDLLVYLR
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mRNA from alignment at P-littoralis_Contig98:575212..575433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig98.124.1 ID=mRNA_P-littoralis_Contig98.124.1|Name=mRNA_P-littoralis_Contig98.124.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig98:575212..575433- (Pylaiella littoralis U1_48)
CGTGACAAGACGGGCGCCTTCACCAACCCTCTCGACTGGTGGCGCAAGAA CCAATTGGAGTTCCCCCTGCTGGCGGCGCTAGCTCGACGTGTGCTTGCCA TCCCGTCGTCTCAGGCGCAATCCGAGCGCATGTTTTCCGTCGCAGGGCTC ACCGTGACGCCTAGGCGGCCTAGGCGGAGTTGCCTTGCCAACGACAGCGT CGACCTCCTAGTGTACTTGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig98:575212..575433-

>mRNA_P-littoralis_Contig98.124.1 ID=mRNA_P-littoralis_Contig98.124.1|Name=mRNA_P-littoralis_Contig98.124.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig98:575212..575433- (Pylaiella littoralis U1_48)
CGTGACAAGACGGGCGCCTTCACCAACCCTCTCGACTGGTGGCGCAAGAA
CCAATTGGAGTTCCCCCTGCTGGCGGCGCTAGCTCGACGTGTGCTTGCCA
TCCCGTCGTCTCAGGCGCAATCCGAGCGCATGTTTTCCGTCGCAGGGCTC
ACCGTGACGCCTAGGCGGCCTAGGCGGAGTTGCCTTGCCAACGACAGCGT
CGACCTCCTAGTGTACTTGCGC
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