mRNA_P-littoralis_Contig98.115.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig98.115.2
Unique NamemRNA_P-littoralis_Contig98.115.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 2.400e-73
Identity = 151/382 (39.53%), Postives = 206/382 (53.93%), Query Frame = 2
Query:  401 KHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPGKPKRPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGCVELLPVSVQDCHRADVRDPVRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRNKDR 1546
            ++RSTL+ R+RR +  Y KP+L D TF   FRM++DDFR LVD LRP L++N   G LRNGA+PVEYQV  TLRWLAGG + +   GHVIA+STAY     VI A+N C    C+WPE + D     +   + +   V+ KCVGA+DGLF    +          L     ++GF               GM++++  +  R      F       S  ++LL     G+P        V GN   G    V +                VRRWGILW+P+E+R+     +V ++VRLHNFC DRKV+VPT   G    P  + F+  G   +D+FET P  +GRP ++QA+ S PRE IR++LE  G+ RP HNI+R+  R
Sbjct:   44 RNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGF---------------GMNFQVCSQNDRT----AFNF-----SGFDKLL----AGLP----EGHFVVGNAAYGASERVVVPFPGTSPPXEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCWDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARSHKR 392          
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 5.400e-67
Identity = 145/389 (37.28%), Postives = 196/389 (50.39%), Query Frame = 2
Query:  383 DKHQKPKHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPG----KPKRPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGCVELLPVSVQDCHRADVRDPVRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRN 1537
            D+   P+ R   +RR+RRSW  Y+KP++ DGTFR  FRMD+ +F  L DMLRP+LERN  MG+LRNG +PVE+Q+   LR+LAGG + ++  G+VIA+STAY    RVI AIN     +C WPE +   D     +  RSTNGVI  CVGA+DGLF    +  L  H   +      ++GF     G      +        PG    +    H + G  L   P          G    P   +     PG                 +          V+ WGILW+PL++RL  V+ ++ S+VRLHNF R R+  +P +    V  P  + F   G     +F+T P + GR  R   R SAPRE IR+ LEQ  +GRP  N+ RN
Sbjct:   34 DEGDPPQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPG----AYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNFLRRRRARIPRSP-WRVTQPVEVRFRPDGSLEGTYFDTVP-TRGRQTRG-GRASAPREAIRQYLEQYSIGRPRWNLQRN 414          
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 5.630e-62
Identity = 134/347 (38.62%), Postives = 177/347 (51.01%), Query Frame = 2
Query:  521 LVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPGKP--KRPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGCVELLPVSVQDCHRADVRDP---VRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRNKDR 1546
            LVD LRP L++N  MG LRNGA+PVE QV  TLRWLAGG + +   GHVIA+STAY     VI A+N C    C+WPE + D    A  F +RS+  V+ KCVGA DGLF    +          L     ++GF            +        PG    +      GF    A       ++     G   +G   R V    G       +     V  C  A  +     VRRWGILW+P+E+R+     +V ++VRLHNFCRDRKV+VPT   G    P  + F+  G   +D+FET P  +GRP ++QA+ S PRE IR++LE  G+ RP HNI+R+  R
Sbjct:   73 LVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVV-----GDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARSHKR 413          
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 6.950e-60
Identity = 143/396 (36.11%), Postives = 200/396 (50.51%), Query Frame = 2
Query:  398 PKHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPGKPK-----RPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGCVELLPVSVQDCHRADVRDP--------VRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRNKDR 1546
            P HR   + R+RRS+  Y +P++ D TFR  FRMD+ DF  L D+LRP+L+R+  MG+LRNGA+PVE+Q+  TLR+LAGG + ++   +VIAKSTAY    RVI AIN      C+WP    D ++ A  +  RSTNGVI +CVGA+DGLF       L  H          ++ F     G    + +        PG        +  G         P  F       G    P   R    VP       PG    L     + +++  R          V+ W ILWKPL +RL  V  ++ ++VRLHNF R R+  V    A +V +P ++ F+  G     +++T P + GRP++  A V  PRE IR  L+Q  MGRP  N++RN +R
Sbjct:   43 PAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGD-DAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIV-----GDAAYPASNRVL--VPD------PGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNFLRRRRAPV-LQSAWNVPMPESVTFHPDGGIDGSYYDTVP-TRGRPSKA-AEVCMPREIIRDYLDQKSMGRPRFNLNRNVNR 421          
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 7.270e-50
Identity = 81/123 (65.85%), Postives = 103/123 (83.74%), Query Frame = 3
Query:  843 GFFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGIL 1211
            G FVR ++P++++  EPN +Y+GHK GFGMNFQA+CDAQYRI AWTM+CPGSQNDRTAF  + F KLL  LP+G+++VGDAAY  S+ V+VP+PGT +S SQDA NYY+SQCR+AI QT+GIL
Sbjct:   27 GLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGIL 149          
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.030e-49
Identity = 130/385 (33.77%), Postives = 181/385 (47.01%), Query Frame = 2
Query:  401 KHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPGKPKRPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGC---VELLPVSVQDCHRADVRDPVRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRNKDR 1546
            ++RSTL+ R+RR +  + KPLL D TF   FRM++DDFR L+D LRP L +N  MG LR GA+PVEYQ+  TLRWLAGG + +   GHVIA+STAY     VI A+N C    C+WPE + D               V+ KCVGA+DGLF                                  R I+    +   P      H   G  +  A    +ER++      VP F   S S   +       C   V    ++++  +       VRRWGILW+P+E+R+                                +    + F+  G   +D+FET P  +GRP ++QA+ S PRE IR++LE  G+ RP HNI+R+ +R
Sbjct:   44 RNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLFV---------------------------------RMIKPSAKEVAEPNLYYNGHRK-GVVVGDAAYGASERVV------VP-FPGTSLSASQD------ACNNYVSQYRMAIEQTYGI----LVRRWGILWRPMEVRIE-------------------------------KFEHVVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLIRPEHNIARSHNR 331          
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 2.100e-48
Identity = 131/380 (34.47%), Postives = 171/380 (45.00%), Query Frame = 2
Query:  407 RSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPGKPKRPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGCVELLPVSVQDCHRADVRDPVRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRNKDR 1546
            RSTL+ R RR +  Y KP+L D TF   FRM++DDFR LVD LRP L++N  MG LRNGA+PVEYQV  TLRWLAGG   +   GHVIA+STAY           VC+A           Y  +A   N          C G+ +                                    R A    G D  L G P+    +                      G   +G   R V    G       +     +  C  A  +     +GIL   + +    V  +V ++VRLHNFCRDRKV+VPT   G    P  + F+  G   +D+FET P  +GRP ++QA+ S PRE IR++LE  G+ RP HNI+R+  R
Sbjct:   46 RSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHA---------VCDA----------QYRIMAWMMN----------CPGSQND-----------------------------------RTAFNFSGFDKLLAGLPEGHFVV----------------------GDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQT----YGILVSVVGMAKVVVEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARSHKR 335          
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 3.260e-44
Identity = 80/121 (66.12%), Postives = 92/121 (76.03%), Query Frame = 3
Query:  843 GFFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFG 1205
            G FV    P+ R    P  FYSGHKKGFGMNFQA+C+A+Y+I AWTMNCPGS NDRTAFK SGF ++L+ LPKG YIVGD AYP SD VLVPYPGT ++ SQD+ N+Y SQ RI I Q FG
Sbjct:  120 GLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFG 240          
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.070e-26
Identity = 63/127 (49.61%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  563 MGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPG 943
            MG LRNGA+PVEYQV  TLRWLAGG + +   GHVIA+STAY     VI A+N C    C+WPE + D    A  F +RS+ G   +  G+   L  P  +AE  G   AQL+LQ  QE  R ELPG
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQAEREGGRRAQLMLQRAQERLRHELPG 126          
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 9.520e-26
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 3
Query:  843 GFFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILSGGGASSGSRWSSGWATLPRLSRVSFACTTSAETERWR 1325
            G FV+TL P+ +DT    ++YSG K  +G+N QA+C A YR  + +   PG+ ND  A+  S   + +  LPKG+Y++GDAAYP S+ +L PYPG  +   +D+ N++LSQ R+ I Q+FGIL G            W  L R  +V FA  T   T  +R
Sbjct:  207 GLFVKTLAPSPKDTANVIAYYSGQKCAYGINVQAMCTADYRFCSMSAITPGATNDWAAWLRSKLSRAVNRLPKGFYVLGDAAYPLSEQLLTPYPGKNLPLGEDSFNFHLSQLRVKIEQSFGILVGT-----------WGILWRPLKVDFAGRTDLITALFR 356          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJA1_9PHAE2.400e-7339.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3F2_9PHAE5.400e-6737.28DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE5.630e-6238.62DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE6.950e-6036.11DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE7.270e-5065.85DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE1.030e-4933.77DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE2.100e-4834.47DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE3.260e-4466.12DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J9B3_9PHAE1.070e-2649.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L386_9PHAE9.520e-2640.37DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig98contigP-littoralis_Contig98:529666..533137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog72019.SARC_10743T0
Model size2172
Max annot lvl72019.SARC_10743T0|-
Hectar predicted targeting categoryother localisation
Exons4
Evalue8e-18
EggNOG OGs2D5T8@1|root,2SZJJ@2759|Eukaryota
Cds size561
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig98.115.2prot_P-littoralis_Contig98.115.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig98 532104..532664 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791903.0448172-UTR-P-littoralis_Contig98:529665..5306261680791903.0448172-UTR-P-littoralis_Contig98:529665..530626Pylaiella littoralis U1_48UTRP-littoralis_Contig98 529666..530626 -
1680791903.0580091-UTR-P-littoralis_Contig98:530877..5311471680791903.0580091-UTR-P-littoralis_Contig98:530877..531147Pylaiella littoralis U1_48UTRP-littoralis_Contig98 530878..531147 -
1680791903.070486-UTR-P-littoralis_Contig98:532051..5321031680791903.070486-UTR-P-littoralis_Contig98:532051..532103Pylaiella littoralis U1_48UTRP-littoralis_Contig98 532052..532103 -
1680791903.093426-UTR-P-littoralis_Contig98:532664..5327221680791903.093426-UTR-P-littoralis_Contig98:532664..532722Pylaiella littoralis U1_48UTRP-littoralis_Contig98 532665..532722 -
1680791903.105099-UTR-P-littoralis_Contig98:532867..5331371680791903.105099-UTR-P-littoralis_Contig98:532867..533137Pylaiella littoralis U1_48UTRP-littoralis_Contig98 532868..533137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791903.080596-CDS-P-littoralis_Contig98:532103..5326641680791903.080596-CDS-P-littoralis_Contig98:532103..532664Pylaiella littoralis U1_48CDSP-littoralis_Contig98 532104..532664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig98.115.2

>prot_P-littoralis_Contig98.115.2 ID=prot_P-littoralis_Contig98.115.2|Name=mRNA_P-littoralis_Contig98.115.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
MLTQLLDLLTLLDKLESLDKHQKPKHRSTLIRRQRRSWAAYSKPLLADGT
FRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWL
AGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSI
AAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*
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mRNA from alignment at P-littoralis_Contig98:529666..533137-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig98.115.2 ID=mRNA_P-littoralis_Contig98.115.2|Name=mRNA_P-littoralis_Contig98.115.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3472bp|location=Sequence derived from alignment at P-littoralis_Contig98:529666..533137- (Pylaiella littoralis U1_48)
CTGTTCGGGTTGGTGCCTGTTGCACCGCCGTGTACCGCAGTCGCAGTCTG TGTGAAGGAGTTCGCTGCCTGGGAGGCTCATGGGCAAGCCTCCCAGGTTA GAGCGGGTATTAACGGAAGGCCAAAAAAAACGAAATAGCGGGAACAAAAA CGAAATAACTTCGTTCTTCTGGATAAAAAAATAAAAAACTCCCTTTCGGT ATTAACGCGTTTCTGCTGCGAGGAGCTGGAGCAGCGGAATAGAGGAGATA ACGCCAAAAATGATGTAAACCCAGAGCGCGATAACGCCAAAAATGATGTA AACCCAGAGCGCGCGGGGCCCAATTTCAAAATACGCGGTGGAATGCAGCT CGCGGAACGTACAGCGCACGCCACGACCAGCTCTCGGCAACAACACAGCC ATCCTGCTCGACCATGGGGCCTCCTCCTAGCTCAAGAACCAAGCGCCTTC GCCGTTTGGCGAAGTTGACGGCAATGTTAACGCAGCTGCTGGATCTGCTG ACTTTGTTGGACAAGCTGGAATCGTTGGACAAGCATCAGAAACCGAAGCA CCGCAGCACGCTGATCCGGCGTCAAAGGCGAAGCTGGGCGGCTTACAGCA AGCCCCTCCTGGCAGACGGGACCTTCAGATCGAGTTTCCGCATGGACCAC GACGACTTCAGGGACCTGGTGGATATGCTCCGCCCTCAACTGGAGAGAAA CCCTCACATGGGGAGCCTTCGCAACGGTGCGGTCCCTGTAGAGTACCAGG TCGGGAATACTCTGCGGTGGTTGGCTGGTGGTCAAATGCTCGACATCAAG CAAGGCCATGTGATCGCGAAGAGCACGGCGTACCAGACGGCCGTCCGTGT CATCAAGGCGATCAATGTCTGTGAGGCGCCGGAATGCCGATGGCCCGAGA AACAGACGGATTACGACAGCATCGCGGCCGGGTTCAACAGCCGCAGCACG AACGGTGTGATCGCCAAGTGCGTGGGAGCCGTGGACGGGCTTTTTCGTCC GCACCCTGAGGCCGAACTCCCGGGACACACATGAGCCCAACTCCTTCTAC AGTGGCCACAAGAAGGGTTTCGGGATGAACTTCCAGGCAAGAACAATGAT TAAGCGCCTACTTGGTTGGGGGTGCTGCTATTTTTTTTTGATACGGGATG AAACATTAGGAATCATGTGCCCCGAACGCCGCTGCGGCAGCAGCAGATAC TTTTGCCGGTGCTGTTTCCTGTAATTGTTGTAGACTATCACATTAGCTCA CTACCGGCGCAGTCTCGCTCACAAACCAGTCACATATCGTGCTAGGAGAA ATAAAAACCAAATAAATGGACCATGATCACCCACAGTCAAATCAGAGAGG GTACCGTTGGGGTACCATCTGTGGTGGCCAAAGTATCAAACAAAATACAG AAAAAAATAGGTTCGACAGAAAAAAACAAAAAAGGACCAACAAAAAATTG TAAACAGTACGACGAAAAACAAAACAAAAACAAAAACAAGACAAACCTCA ACCATAACCAAAAACTTCGAAGTACTTCGTACATCGAACCAGGGCCCAGG GCCATGACAGACCAAGGCAAAGGCTGTAATACCATGAGGGGGTGTAGATC TCGGGAATGTTGCGGAGGTATCACATATTTCGGATATAATAATTTAACAC AACGTGACTCCCGTGATATATGCTGCGTAATTTTTAAGCAGCGTTGTCGA CGTAGGTCACATACCACGTTGTCCCACGTCAGCGACGAAGTTCATCGTCA CAGCGCGTGACATGTGCTGCGGCCGAAATAAATTTTGTTGGCGGTGAATG CACAGGGTTGAAGTTGTCCGTAGTACAGCAGCGGTACGGAGCCTTTTCTG AATCTTTGTCGGCGTCGTGCACAGGAAAATATATTTTCGTACGACGTTCG TACAATGCAGTGGAGGCGCTTGCTACTGTTGTGCGTTCCCTCGCATCTGA CACCATCTACGCACACACTCGATGTTGCTCTGTTGAACAGGCTATCTGCG ACGCGCAATACAGGATTAGGGCATGGACTATGAACTGCCCGGGAAGCCAA AACGACCGCACGGCCTTTAAGGTTTCCGGCTTCCCCAAGCTCCTCGAAGC TTTGCCGAAAGGTTACTACATCGTGGGGGACGCGGCGTACCCGGGTTCGG ACGTCGTTCTCGTTCCGTACCCGGGAACGAAGGTGTCGGATAGCCAGGAT GCGTTGAACTACTACCTGTCTCAGTGCAGGATTGCCATCGGGCAGACGTT CGGGATCCTGGTGAGTATCAAGTGTCAACTTCTGGGTTCGCATAGAACGG GTGCTGTTGTTGTCGGATACTATTTTGTTCTCGTGCACGTAAAACTTAGG TTTTACGTGTGGGTCTGCACGGGGTGATTTTTTTTCTTCGGAACAGTCTT GTTGCGTGAGTTTTGCTGAACCTTATAGATCACGAGCACACGAGCAGGTT TCTATATCATTCATTCTTGACTGTCCACCTATTTTTGGCGTTTCTCTTGA TGATATGTAAGTCAGGAGGTGGGGCATCCTCTGGAAGCCGTTGGAGCTCC GGCTGGGCAACGTTGCCCCGCTTGTCGAGAGTCTCGTTCGCCTGCACAAC TTCTGCCGAGACCGAAAGGTGGAGGTGCCAACGGCGGAGGCTGGAGACGT TCGTATCCCCAGCAACATCGGCTTCAACCAAAGCGGAGAGTTCCGCAACG ACTTTTTCGAAACCGAGCCCTCCTCGTCTGGTCGCCCGGCGAGAAACCAG GCTCGGGTGTCGGCTCCCCGGGAGGACATCCGCCGACAGCTCGAACAACT AGGCATGGGGCGGCCGGCGCACAACATCTCTAGGAACAAAGACCGCAAGC GGTGAATCGTTGAACAGATTGTGTGGAGGGCACGGTGTTCGTCGCAGTCT ACGTTTGGGATGGGGGTATTGCTTATCTGTCCTCTCGGTTTGAGTGCAGG TCGCGGTAGGTAGGCGCGTGCGCTCGGCCTATGGGGTAATGCCGCAGATA ACCTCTGCCACGTCGAGGAAAGGAAACTACCACGGGTGGACTTTCTTTGT CTCTTTGGTTTTGGAACGGGCTTTGTGTGTCTCAAGTTGATTTGCCGTTT ACGGCTTCCTCTTCAAATTTTTCTAATGCTCACACCTCCATATGTTGTGT GCGTTGGGACATTATTCATGTATTGTATATTGTCGCGGAGGTCTGCTGTG TTGATTGTGAGGAAGATCAATTACCTTGGATAGCCTTTGTGAAGTCTGTG TCGTCCTAACTTTCACGCTTCATTTTGTTTTATCTTAATATGCGAGTTTG TGGTATTAAGACCCGCTCATGCGTGGCGTGGCGGGATGCGGACGCGGAAT GCACCAGTGGAGGTTGTTGATGGTGTCTGGGAAATTCATTCCATGGTCCG CCCCCGAATGGACTTGTTCTGCACGGCAGCATCAACGTACGTATGTGTGT GGCATGTGTTTATCGGTCTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig98:529666..533137-

>mRNA_P-littoralis_Contig98.115.2 ID=mRNA_P-littoralis_Contig98.115.2|Name=mRNA_P-littoralis_Contig98.115.2|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig98:529666..533137- (Pylaiella littoralis U1_48)
ATGTTAACGCAGCTGCTGGATCTGCTGACTTTGTTGGACAAGCTGGAATC
GTTGGACAAGCATCAGAAACCGAAGCACCGCAGCACGCTGATCCGGCGTC
AAAGGCGAAGCTGGGCGGCTTACAGCAAGCCCCTCCTGGCAGACGGGACC
TTCAGATCGAGTTTCCGCATGGACCACGACGACTTCAGGGACCTGGTGGA
TATGCTCCGCCCTCAACTGGAGAGAAACCCTCACATGGGGAGCCTTCGCA
ACGGTGCGGTCCCTGTAGAGTACCAGGTCGGGAATACTCTGCGGTGGTTG
GCTGGTGGTCAAATGCTCGACATCAAGCAAGGCCATGTGATCGCGAAGAG
CACGGCGTACCAGACGGCCGTCCGTGTCATCAAGGCGATCAATGTCTGTG
AGGCGCCGGAATGCCGATGGCCCGAGAAACAGACGGATTACGACAGCATC
GCGGCCGGGTTCAACAGCCGCAGCACGAACGGTGTGATCGCCAAGTGCGT
GGGAGCCGTGGACGGGCTTTTTCGTCCGCACCCTGAGGCCGAACTCCCGG
GACACACATGA
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