mRNA_P-littoralis_Contig98.115.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 252 bits (644), Expect = 2.400e-73 Identity = 151/382 (39.53%), Postives = 206/382 (53.93%), Query Frame = 2
Query: 401 KHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPGKPKRPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGCVELLPVSVQDCHRADVRDPVRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRNKDR 1546
++RSTL+ R+RR + Y KP+L D TF FRM++DDFR LVD LRP L++N G LRNGA+PVEYQV TLRWLAGG + + GHVIA+STAY VI A+N C C+WPE + D + + + V+ KCVGA+DGLF + L ++GF GM++++ + R F S ++LL G+P V GN G V + VRRWGILW+P+E+R+ +V ++VRLHNFC DRKV+VPT G P + F+ G +D+FET P +GRP ++QA+ S PRE IR++LE G+ RP HNI+R+ R
Sbjct: 44 RNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGF---------------GMNFQVCSQNDRT----AFNF-----SGFDKLL----AGLP----EGHFVVGNAAYGASERVVVPFPGTSPPXEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCWDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARSHKR 392
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 236 bits (602), Expect = 5.400e-67 Identity = 145/389 (37.28%), Postives = 196/389 (50.39%), Query Frame = 2
Query: 383 DKHQKPKHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPG----KPKRPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGCVELLPVSVQDCHRADVRDPVRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRN 1537
D+ P+ R +RR+RRSW Y+KP++ DGTFR FRMD+ +F L DMLRP+LERN MG+LRNG +PVE+Q+ LR+LAGG + ++ G+VIA+STAY RVI AIN +C WPE + D + RSTNGVI CVGA+DGLF + L H + ++GF G + PG + H + G L P G P + PG + V+ WGILW+PL++RL V+ ++ S+VRLHNF R R+ +P + V P + F G +F+T P + GR R R SAPRE IR+ LEQ +GRP N+ RN
Sbjct: 34 DEGDPPQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPG----AYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNFLRRRRARIPRSP-WRVTQPVEVRFRPDGSLEGTYFDTVP-TRGRQTRG-GRASAPREAIRQYLEQYSIGRPRWNLQRN 414
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 223 bits (567), Expect = 5.630e-62 Identity = 134/347 (38.62%), Postives = 177/347 (51.01%), Query Frame = 2
Query: 521 LVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPGKP--KRPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGCVELLPVSVQDCHRADVRDP---VRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRNKDR 1546
LVD LRP L++N MG LRNGA+PVE QV TLRWLAGG + + GHVIA+STAY VI A+N C C+WPE + D A F +RS+ V+ KCVGA DGLF + L ++GF + PG + GF A ++ G +G R V G + V C A + VRRWGILW+P+E+R+ +V ++VRLHNFCRDRKV+VPT G P + F+ G +D+FET P +GRP ++QA+ S PRE IR++LE G+ RP HNI+R+ R
Sbjct: 73 LVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVV-----GDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARSHKR 413
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 217 bits (553), Expect = 6.950e-60 Identity = 143/396 (36.11%), Postives = 200/396 (50.51%), Query Frame = 2
Query: 398 PKHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPGKPK-----RPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGCVELLPVSVQDCHRADVRDP--------VRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRNKDR 1546
P HR + R+RRS+ Y +P++ D TFR FRMD+ DF L D+LRP+L+R+ MG+LRNGA+PVE+Q+ TLR+LAGG + ++ +VIAKSTAY RVI AIN C+WP D ++ A + RSTNGVI +CVGA+DGLF L H ++ F G + + PG + G P F G P R VP PG L + +++ R V+ W ILWKPL +RL V ++ ++VRLHNF R R+ V A +V +P ++ F+ G +++T P + GRP++ A V PRE IR L+Q MGRP N++RN +R
Sbjct: 43 PAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGD-DAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIV-----GDAAYPASNRVL--VPD------PGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNFLRRRRAPV-LQSAWNVPMPESVTFHPDGGIDGSYYDTVP-TRGRPSKA-AEVCMPREIIRDYLDQKSMGRPRFNLNRNVNR 421
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 185 bits (469), Expect = 7.270e-50 Identity = 81/123 (65.85%), Postives = 103/123 (83.74%), Query Frame = 3
Query: 843 GFFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGIL 1211
G FVR ++P++++ EPN +Y+GHK GFGMNFQA+CDAQYRI AWTM+CPGSQNDRTAF + F KLL LP+G+++VGDAAY S+ V+VP+PGT +S SQDA NYY+SQCR+AI QT+GIL
Sbjct: 27 GLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGIL 149
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 187 bits (474), Expect = 1.030e-49 Identity = 130/385 (33.77%), Postives = 181/385 (47.01%), Query Frame = 2
Query: 401 KHRSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPGKPKRPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGC---VELLPVSVQDCHRADVRDPVRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRNKDR 1546
++RSTL+ R+RR + + KPLL D TF FRM++DDFR L+D LRP L +N MG LR GA+PVEYQ+ TLRWLAGG + + GHVIA+STAY VI A+N C C+WPE + D V+ KCVGA+DGLF R I+ + P H G + A +ER++ VP F S S + C V ++++ + VRRWGILW+P+E+R+ + + F+ G +D+FET P +GRP ++QA+ S PRE IR++LE G+ RP HNI+R+ +R
Sbjct: 44 RNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLFV---------------------------------RMIKPSAKEVAEPNLYYNGHRK-GVVVGDAAYGASERVV------VP-FPGTSLSASQD------ACNNYVSQYRMAIEQTYGI----LVRRWGILWRPMEVRIE-------------------------------KFEHVVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLIRPEHNIARSHNR 331
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 183 bits (465), Expect = 2.100e-48 Identity = 131/380 (34.47%), Postives = 171/380 (45.00%), Query Frame = 2
Query: 407 RSTLIRRQRRSWAAYSKPLLADGTFRSSFRMDHDDFRDLVDMLRPQLERNPHMGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPGYLRRAIQD*GMDYELPGKPKRPHGL*GFRLPQAPRSFAERLLHRGGRGVPGFGRRSRSVPGNEGVG*PGCVELLPVSVQDCHRADVRDPVRRWGILWKPLELRLGNVAPLVESLVRLHNFCRDRKVEVPTAEAGDVRIPSNIGFNQSGEFRNDFFETEPSSSGRPARNQARVSAPREDIRRQLEQLGMGRPAHNISRNKDR 1546
RSTL+ R RR + Y KP+L D TF FRM++DDFR LVD LRP L++N MG LRNGA+PVEYQV TLRWLAGG + GHVIA+STAY VC+A Y +A N C G+ + R A G D L G P+ + G +G R V G + + C A + +GIL + + V +V ++VRLHNFCRDRKV+VPT G P + F+ G +D+FET P +GRP ++QA+ S PRE IR++LE G+ RP HNI+R+ R
Sbjct: 46 RSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHA---------VCDA----------QYRIMAWMMN----------CPGSQND-----------------------------------RTAFNFSGFDKLLAGLPEGHFVV----------------------GDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQT----YGILVSVVGMAKVVVEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARSHKR 335
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 172 bits (436), Expect = 3.260e-44 Identity = 80/121 (66.12%), Postives = 92/121 (76.03%), Query Frame = 3
Query: 843 GFFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFG 1205
G FV P+ R P FYSGHKKGFGMNFQA+C+A+Y+I AWTMNCPGS NDRTAFK SGF ++L+ LPKG YIVGD AYP SD VLVPYPGT ++ SQD+ N+Y SQ RI I Q FG
Sbjct: 120 GLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFG 240
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.070e-26 Identity = 63/127 (49.61%), Postives = 76/127 (59.84%), Query Frame = 2
Query: 563 MGSLRNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINVCEAPECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAVDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPG 943
MG LRNGA+PVEYQV TLRWLAGG + + GHVIA+STAY VI A+N C C+WPE + D A F +RS+ G + G+ L P +AE G AQL+LQ QE R ELPG
Sbjct: 1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQAEREGGRRAQLMLQRAQERLRHELPG 126
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE) HSP 1 Score: 121 bits (303), Expect = 9.520e-26 Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 3
Query: 843 GFFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQAICDAQYRIRAWTMNCPGSQNDRTAFKVSGFPKLLEALPKGYYIVGDAAYPGSDVVLVPYPGTKVSDSQDALNYYLSQCRIAIGQTFGILSGGGASSGSRWSSGWATLPRLSRVSFACTTSAETERWR 1325
G FV+TL P+ +DT ++YSG K +G+N QA+C A YR + + PG+ ND A+ S + + LPKG+Y++GDAAYP S+ +L PYPG + +D+ N++LSQ R+ I Q+FGIL G W L R +V FA T T +R
Sbjct: 207 GLFVKTLAPSPKDTANVIAYYSGQKCAYGINVQAMCTADYRFCSMSAITPGATNDWAAWLRSKLSRAVNRLPKGFYVLGDAAYPLSEQLLTPYPGKNLPLGEDSFNFHLSQLRVKIEQSFGILVGT-----------WGILWRPLKVDFAGRTDLITALFR 356 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig98.115.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig98.115.2 >prot_P-littoralis_Contig98.115.2 ID=prot_P-littoralis_Contig98.115.2|Name=mRNA_P-littoralis_Contig98.115.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp MLTQLLDLLTLLDKLESLDKHQKPKHRSTLIRRQRRSWAAYSKPLLADGTback to top mRNA from alignment at P-littoralis_Contig98:529666..533137- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig98.115.2 ID=mRNA_P-littoralis_Contig98.115.2|Name=mRNA_P-littoralis_Contig98.115.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3472bp|location=Sequence derived from alignment at P-littoralis_Contig98:529666..533137- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig98:529666..533137- >mRNA_P-littoralis_Contig98.115.2 ID=mRNA_P-littoralis_Contig98.115.2|Name=mRNA_P-littoralis_Contig98.115.2|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig98:529666..533137- (Pylaiella littoralis U1_48)back to top |