mRNA_P-littoralis_Contig98.111.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig98.111.1
Unique NamemRNA_P-littoralis_Contig98.111.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig98.111.1 vs. uniprot
Match: A0A6H5KYJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.400e-17
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 QGMVDEEWKDSNGNKVSVPSDHSQDDKAPEGLRRQLRSLDLEGAARGLKNERRIKWKNNEDAFMYDLQKRCFDWLKEVRKNHT 249
            + M     +D NGN +SVP +HS D+ A E L+  L+ LDLEGAA+ L+ E R K+K ++ AF  DLQ RCF+WLKEVR  HT
Sbjct:   94 RAMATPTCRDGNGNPLSVPDEHSNDELASEHLKSLLKRLDLEGAAKSLQEELRGKFKGDDGAFYADLQLRCFNWLKEVRGKHT 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig98.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYJ0_9PHAE2.400e-1751.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig98contigP-littoralis_Contig98:525790..526056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size267
Hectar predicted targeting categoryother localisation
Exons1
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791902.913736-UTR-P-littoralis_Contig98:525789..5257951680791902.913736-UTR-P-littoralis_Contig98:525789..525795Pylaiella littoralis U1_48UTRP-littoralis_Contig98 525790..525795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791902.9283562-CDS-P-littoralis_Contig98:525795..5260561680791902.9283562-CDS-P-littoralis_Contig98:525795..526056Pylaiella littoralis U1_48CDSP-littoralis_Contig98 525796..526056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig98.111.1prot_P-littoralis_Contig98.111.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig98 525796..526056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig98.111.1

>prot_P-littoralis_Contig98.111.1 ID=prot_P-littoralis_Contig98.111.1|Name=mRNA_P-littoralis_Contig98.111.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MVDEEWKDSNGNKVSVPSDHSQDDKAPEGLRRQLRSLDLEGAARGLKNER
RIKWKNNEDAFMYDLQKRCFDWLKEVRKNHTVSEAY*
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mRNA from alignment at P-littoralis_Contig98:525790..526056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig98.111.1 ID=mRNA_P-littoralis_Contig98.111.1|Name=mRNA_P-littoralis_Contig98.111.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig98:525790..526056+ (Pylaiella littoralis U1_48)
CAGGGGATGGTGGATGAAGAATGGAAAGACAGCAACGGGAACAAGGTCTC
CGTGCCGAGCGACCACAGCCAGGACGACAAAGCGCCGGAGGGACTCCGTC
GTCAATTGCGCTCTCTAGATCTGGAGGGGGCTGCCCGAGGTCTGAAGAAC
GAACGTCGTATCAAGTGGAAGAACAACGAGGACGCATTCATGTACGACCT
GCAGAAACGCTGTTTCGATTGGCTGAAGGAAGTGAGGAAAAACCACACGG
TGAGCGAAGCCTATTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig98:525790..526056+

>mRNA_P-littoralis_Contig98.111.1 ID=mRNA_P-littoralis_Contig98.111.1|Name=mRNA_P-littoralis_Contig98.111.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig98:525790..526056+ (Pylaiella littoralis U1_48)
ATGGTGGATGAAGAATGGAAAGACAGCAACGGGAACAAGGTCTCCGTGCC
GAGCGACCACAGCCAGGACGACAAAGCGCCGGAGGGACTCCGTCGTCAAT
TGCGCTCTCTAGATCTGGAGGGGGCTGCCCGAGGTCTGAAGAACGAACGT
CGTATCAAGTGGAAGAACAACGAGGACGCATTCATGTACGACCTGCAGAA
ACGCTGTTTCGATTGGCTGAAGGAAGTGAGGAAAAACCACACGGTGAGCG
AAGCCTATTGA
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