mRNA_P-littoralis_Contig979.10.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig979.10.3 vs. uniprot
Match: A0A6H5JY66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY66_9PHAE) HSP 1 Score: 1056 bits (2730), Expect = 0.000e+0 Identity = 621/950 (65.37%), Postives = 698/950 (73.47%), Query Frame = 1
Query: 436 VQVTGGYASTPGRYAEEGTRNGQSLYVSADQSSELFFSERADXXXXXXXXXXXXXXXXXXXLLPQDLIVDGD----ADEGGEAVRRRELGACIGGFWSLAPAGNGYPRLTVSDCAEHPADIQVTSWSEVTCAGCQEQPYNSGAPTVACASNDQSYSSASSGEADDGGVVATQTPAPTAASTPAAXXXXXXV-------------VAQTPVPTAGAA--VVDESCKVLEVGGMYPGLYTAVGTYGGRGDFYSEDRQHNLFFESTSTTGTXXXXXXXXXXXXXXXXXXXXRA------LTGIFGDRSGIRENGRGLAACEGGYWIKTPTGGGFPFFAVADCALYPENVASSSSWMIITCDGCTPTAATSQQAVACATGDDAFVATPSPVTPVVVGVQVGETLPGAGPSTCGDVTVTGARAGNYTVAGEVNGAADVYSDDGLWRMFFAAPAPALSTR-RRLAAGQEDGGEMGRGRRRGAPGSPSADVAPRGR------GLQTCEGYWYITPAEERYPAYAIFDCADHPADIFSTDWFFLECEDCEVIMASPKPAVSCTGAADNAKRGASLVTPSPTAVRPALTPSP---AEVSVSATCTELYLTGDFPGNYTAEGTYRGKLDFYSDDGSVNLYFELATSRRRSLSST-IVRDGGQRRRLLPREVMLSALEDKYGA--TSRRLAVCNSGYWILTPVGGDGYPTLGVPDCAEHPADIRANTWLVASCSTCGVEEAPSFVAPTITCAADLAAGNAGGGETPAPGLPETCGTVYVTGPAAGVYVRSGEYGGMGDFFSRNDAWNMYWTFYAGKPVNRNRFRRGLSVPDGRRGSDRWSVEYEMAIQTLAADLVDR--AAR-LDGQGRR-LEVCDDGFWLITPRGGGFPFYGTLNCAEHPADIANLAAWSVVECDGCGSEPVSGTVTV--SCDGADFTPPPSTAAGNNPVEIGGTPTPSP 3153
V VTGGY TPG Y EEGTRNG SLY+S D+S+ELFFSER XXXXXXXXXXXXXXXXXXXLLPQD++ D + EGG A +RR LGAC GFWSLAPAG+GYPRLTV DCA HPADI+VT+WSEVTC GC+EQ +N P VAC S++ TP+P+AAST XXXXXX QTP P A A VVD+SCKV++V G YPGLYT G+Y RGDFYS D HN+F XXXXXXXXXXXXXXXXXXXX L G+FG+RS + GR LAAC GYWIK PTGGG+P FAVADCA YPE +ASSS+WMI+TC+GC T ATS Q + CATG DAFVATPSPV+PVV G TLPGAGPSTC VTVTG RAG YTV G +NGAADVYSDDGLWRMFFA+PAPALS R RR DGG+ G SA++AP R GLQTC+GYWYITP ++RYPAYA+ DC +HP DI S+DW +L+CEDCEV+ A KP SCTGA N KRG S TP+P + TP P + S S TCTELY+TG+FPGNYTA GTYRGKLDF++DDG+VNLYFELA S RR LSS R+GG RRLLP E+M SALE++Y A SRRLA+C SGYWI+T V GDGYP LGVPDCA+HP DIRANTWLVASC +CGV+EAPSFVAPTI CA+ AAG G TP+P LP CGTVYVTGPAAGVYV+ G+YG GDFFS N+AWNMYWTFYAGKPVNRNRFRRGLSVP+ R GS+RWS EYE+A+QTLA DL R A R D GRR LEVCDDGFWLITPRGGGFPFYGTLNCA+HPADI+NLAAWSVVECDGCGSEP+ GTVTV SCDGADFTPPPST +G+ V +GG TPSP
Sbjct: 17 VLVTGGYGYTPGVYFEEGTRNGGSLYISEDRSAELFFSERXXXXXXXXXXXXXXXXXXXXXLLPQDMLDDSEKAVSVGEGGSAAKRR-LGACTSGFWSLAPAGSGYPRLTVGDCASHPADIKVTAWSEVTCEGCEEQAFNGAVPAVACTSDNS-----------------LATPSPSAASTXXXXXXXXXXXXXXXXXXGGEVGAQQTPSPVASAPEIVVDDSCKVIDVVGRYPGLYTVAGSYNERGDFYSADGGHNIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLRGLFGERSAQQATGRNLAACSNGYWIKMPTGGGYPLFAVADCAAYPEEIASSSTWMIVTCEGCVGTEATSSQTITCATGADAFVATPSPVSPVVAGGGETITLPGAGPSTCEAVTVTGPRAGGYTVGGSINGAADVYSDDGLWRMFFASPAPALSRRARRSLHFSADGGDAG---------PLSAELAPDTRDTHDRRGLQTCDGYWYITPVDDRYPAYAVMDCGEHPVDIVSSDWLYLDCEDCEVVTADSKPDASCTGAPANIKRGGSFNTPAPVVLDFVGTPGPDTSSSGSASTTCTELYVTGEFPGNYTANGTYRGKLDFFNDDGTVNLYFELADSSRRLLSSAGEEREGG--RRLLPGELMASALEERYHALAASRRLAICTSGYWIITQVAGDGYPVLGVPDCADHPVDIRANTWLVASCESCGVQEAPSFVAPTIACASG-AAGXXXXGATPSPALPAICGTVYVTGPAAGVYVQQGDYGTRGDFFSGNNAWNMYWTFYAGKPVNRNRFRRGLSVPEDRAGSERWSEEYELALQTLADDLFRRKEAGRSADWNGRRKLEVCDDGFWLITPRGGGFPFYGTLNCADHPADISNLAAWSVVECDGCGSEPLDGTVTVTISCDGADFTPPPSTTSGDTDVGVGGG-TPSP 935
BLAST of mRNA_P-littoralis_Contig979.10.3 vs. uniprot
Match: D7G5Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q9_ECTSI) HSP 1 Score: 713 bits (1841), Expect = 8.900e-238 Identity = 407/669 (60.84%), Postives = 463/669 (69.21%), Query Frame = 1
Query: 658 EGGEAVRRRELGACIGGFWSLAPAGNGYPRLTVSDCAEHPADIQVTSWSEVTCAGCQEQPYNSGAPTVACASNDQSYSSASSGEADD-----------------GGVVATQTPAPTAASTPAAXXXXXXVVAQTPVPTAGAA--VVDESCKVLEVGGMYPGLYTAVGTYGGRGDFYSEDRQHNLFFESTSTTGTXXXXXXXXXXXXXXXXXXXX------RALTGIFGDRSGIRENGRGLAACEGGYWIKTPTGGGFPFFAVADCALYPENVASSSSWMIITCDGCTPTAATSQQAVACATGDDAFVATPSPVTPVVVGVQVGETLPGAGPSTCGDVTVTGARAGNYTVAGEVNGAADVYSDDGLWRMFFAAPAPALSTR-RRLAAGQEDGGEMGRGRRRGAPGSPSADVAPRGRGLQTCEGYWYITPAEERYPAYAIFDCADHPADIFSTDWFFLECEDCEVIMASPKPAVSCTGAADNAKRGASLVTPSPTAVRPALTPSPAEVSV---SATCTELYLTGDFPGNYTAEGTYRGKLDFYSDDGSVNLYFELATSRRRSLSSTIVRDGGQRRRLLPREVMLSALEDKYGA--TSRRLAVCNSGYWILTPVGGDGYPTLGVPDCAEHPADIRANTWLVASCSTCGVEEAPSFVAPTITCAADLAAGNAG 2571
EGG A RRR LGAC GFWSLAPAG+GYPRLTV DCA HPADI+VT+W EVTC GC+EQ +N P VACAS+D + + S GG V Q QTP P A A +VD+SCKV++VGG YPGLYT G+Y RGDFYS D HN+FFE++S XXXXXX XXXXXXXXXXXXX R L G+FG+RSG + GR LAAC GYWIK PTGGG+PFFAVADCA YPE +ASSS+WMI+TC+GC T ATS QA+ CATG DAFVATPSPV+PVV G + TLPGAGPSTC +TVTG RAG YTV G +NGAAD YSDDGLWRMFFA PA ALS R RR +GG+ AP + D R RGLQTC+GYWYITP ++RYPAYA+ DC +HP DI S+DW +L+CEDCEV+ A KP SCTGA N KRG S TP+P A+ TP P S S TCTELY+TGDFPGNYTA GTYRG+LDF+SDDG+ NLYFELA S RR LSS G+RR LLP EVM SALE++Y A SRRLA+C SGYWI+T V GDGYP LG PDCA+HP DIR NTWLVASC +CGV+EAPSFVAPTITCA+ A G AG
Sbjct: 28 EGGSAARRR-LGACTSGFWSLAPAGSGYPRLTVGDCASHPADIKVTAWLEVTCEGCEEQAFNGAVPAVACASDDSPATPSPSAXXXXXXXXXXXXXXXXXXXXXGGEVGAQ---------------------QTPSPVASAPEIIVDDSCKVVDVGGRYPGLYTVAGSYNERGDFYSADGGHNIFFEASSAXXXXXXXXXFXXXXXXXXXXXXXXGDRRRRVLRGLFGERSGQQATGRNLAACSNGYWIKMPTGGGYPFFAVADCAAYPEEIASSSAWMIVTCEGCVGTEATSAQAITCATGTDAFVATPSPVSPVVAGGEETVTLPGAGPSTCEAITVTGPRAGGYTVEGSINGAADAYSDDGLWRMFFAPPASALSRRARRSLYFSAEGGDAVPLSTELAP--DTRDTHDR-RGLQTCDGYWYITPVDDRYPAYAVMDCGEHPVDIVSSDWLYLDCEDCEVVTADSKPDASCTGAPANLKRGGSFNTPAPVALDFVGTPGPGSSSSGSSSTTCTELYVTGDFPGNYTANGTYRGRLDFFSDDGTFNLYFELADSSRRLLSSADEEREGERR-LLPGEVMASALEERYHAWAASRRLAICTSGYWIITQVAGDGYPVLGAPDCADHPVDIRTNTWLVASCESCGVQEAPSFVAPTITCASGAAGGGAG 670 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig979.10.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig979.10.3 >prot_P-littoralis_Contig979.10.3 ID=prot_P-littoralis_Contig979.10.3|Name=mRNA_P-littoralis_Contig979.10.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=990bp MASGRRDWVGAALCAALAFGRSCESAPVKGRAAGSRKLASCATVQVTGGYback to top mRNA from alignment at P-littoralis_Contig979:50060..81460+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig979.10.3 ID=mRNA_P-littoralis_Contig979.10.3|Name=mRNA_P-littoralis_Contig979.10.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=31401bp|location=Sequence derived from alignment at P-littoralis_Contig979:50060..81460+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig979:50060..81460+ >mRNA_P-littoralis_Contig979.10.3 ID=mRNA_P-littoralis_Contig979.10.3|Name=mRNA_P-littoralis_Contig979.10.3|organism=Pylaiella littoralis U1_48|type=CDS|length=2970bp|location=Sequence derived from alignment at P-littoralis_Contig979:50060..81460+ (Pylaiella littoralis U1_48)back to top |