mRNA_P-littoralis_Contig978.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig978.5.1
Unique NamemRNA_P-littoralis_Contig978.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 3.850e-56
Identity = 82/125 (65.60%), Postives = 104/125 (83.20%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAYPGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRPLELRLGSVAPLVESLVRLHNFCRDQ 375
            A+CDAQYRI AWTM+CPGSQND TAF  + F KLL GLP+G+++V DAAY  S+ V+VP+PGT +S SQDA +YY+SQCR+AIEQT+GILVR WGILWRP+E+R+     +V ++VRLHNFCRD+
Sbjct:   60 AVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDR 184          
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.880e-55
Identity = 83/125 (66.40%), Postives = 103/125 (82.40%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAYPGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRPLELRLGSVAPLVESLVRLHNFCRDQ 375
            A+CDAQYRI AW MNCPGSQND TAF  S F KLL GLP+G+++V DAAY  S+ V+VP+PGT +S SQDA +YY+SQCR+AIEQT+GILVR WGILWRP+E+R+     +V ++VRLHNFCRD+
Sbjct:  212 AVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILVRRWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDR 336          
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.070e-49
Identity = 77/123 (62.60%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAYPGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRPLELRLGSVAPLVESLVRLHNFCR 369
            A+C+A+Y+I AWTMNCPGS ND TAFK S F ++L+ LPKG YIV D AYP SD VLVPYPGT ++ SQD+ ++Y SQ RI IEQ FG +V+TWGILWRPL+++LG V+ ++ ++VRLHNF R
Sbjct:  153 AVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMVKTWGILWRPLQVKLGRVSSVMNAVVRLHNFLR 275          
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 4.870e-49
Identity = 79/122 (64.75%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    4 ICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAYPGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRPLELRLGSVAPLVESLVRLHNFCR 369
            +C+A+Y I AWTMNCPGS ND TAFK S F  +L+ LP G YIV DAAYP SD VLVPYPGT ++ SQDA ++Y SQ RI+IEQ FGI+V+TWGILWRPL++RL  V+ ++ S+VRLHNF R
Sbjct:  220 VCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMVKTWGILWRPLDMRLERVSSVINSVVRLHNFLR 341          
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 3.780e-44
Identity = 75/125 (60.00%), Postives = 93/125 (74.40%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAYPGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRPLELRLGSVAPLVESLVRLHNFCRDQ 375
            A+CDAQYRI AW MNCPGSQND TAF  S F KLL GLP+G+++V DAAY  S+ V+VP+PGT +S SQDA +YY+SQCR+AIEQT+GILV   G       +    V  +V ++VRLHNFCRD+
Sbjct:  141 AVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVSVVG-------MAKVVVEHVVNAVVRLHNFCRDR 258          
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 6.590e-43
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    4 ICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAYPGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRPLELRLGSVAPLVESLVRLHNFCR 369
            IC+A Y I  WTMNCPGSQND TAFK S F  LL  +P   +IV DAAYP S+ VLVP PGT ++ SQDA ++Y SQ RI+IEQ FGILV+TW ILW+PL +RL  V  ++ ++VRLHNF R
Sbjct:  224 ICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILVKTWEILWKPLAIRLDRVGHVMNAIVRLHNFLR 345          
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Match: A0A6H5KNZ9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ9_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.820e-34
Identity = 60/125 (48.00%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAYPGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRPLELRLGSVAPLVESLVRLHNFCRDQ 375
            A+C A YR  A +   PGS ND  A+  S   K +  LP G++I+ DAAYP  + +L PYPG ++   +D+ +++LSQ R+ IEQ+FGILV TWGILWRPL ++LG  A L+ +L  LHNF +D+
Sbjct:  253 AMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPTGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQLGGRADLITALFHLHNFLQDE 377          
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Match: A0A6H5KQF5_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF5_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 6.730e-34
Identity = 58/125 (46.40%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAYPGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRPLELRLGSVAPLVESLVRLHNFCRDQ 375
            A+C A YR  A +   PGS ND  A+  S   K +  LP G++I+ DAAYP  + +L PYPG  +   +D+ +++LSQ R+ IEQ+FGILV TWGILWRPL ++    A L+ +L  LHNF +D+
Sbjct:   96 AMCTADYRFYAMSATSPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQFAGRADLITALFHLHNFLQDE 220          
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Match: A0A6H5K6X9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X9_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.290e-33
Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAYPGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRPLELRLGSVAPLVESLVRLHNFCRDQ 375
            A+C   YR  A     PGS ND  A+  S   K +  LP G++I+ DAAYP  + +L PYPG ++   +D+ +++LSQ R+ IEQ+FGILV TWGILW PL ++LG    L+ +L+ LHNF +D+
Sbjct:   62 AMCTVNYRFCAMPAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWTPLRMQLGGRGDLITALLHLHNFLQDE 186          
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.150e-32
Identity = 58/125 (46.40%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 AICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAYPGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRPLELRLGSVAPLVESLVRLHNFCRDQ 375
            A+C A YR  + +   PG+ ND  A+  S   + +  LPKG+Y++ DAAYP S+ +L PYPG  +   +D+ +++LSQ R+ IEQ+FGILV TWGILWRPL++       L+ +L RLHNF RD+
Sbjct:  240 AMCTADYRFCSMSAITPGATNDWAAWLRSKLSRAVNRLPKGFYVLGDAAYPLSEQLLTPYPGKNLPLGEDSFNFHLSQLRVKIEQSFGILVGTWGILWRPLKVDFAGRTDLITALFRLHNFLRDE 364          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig978.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNF2_9PHAE3.850e-5665.60DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE1.880e-5566.40DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE1.070e-4962.60DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE4.870e-4964.75DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE3.780e-4460.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE6.590e-4360.66DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNZ9_9PHAE5.820e-3448.00DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KQF5_9PHAE6.730e-3446.40DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K6X9_9PHAE1.290e-3345.60DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L386_9PHAE1.150e-3246.40DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig978contigP-littoralis_Contig978:12842..13465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI53028
PFAMsDDE_Tnp_4
Model size375
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.79e-23
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Descriptionnuclease activity
Cds size375
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791897.4877057-CDS-P-littoralis_Contig978:12841..131111680791897.4877057-CDS-P-littoralis_Contig978:12841..13111Pylaiella littoralis U1_48CDSP-littoralis_Contig978 12842..13111 +
1680791897.5021002-CDS-P-littoralis_Contig978:13360..134651680791897.5021002-CDS-P-littoralis_Contig978:13360..13465Pylaiella littoralis U1_48CDSP-littoralis_Contig978 13361..13465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig978.5.1prot_P-littoralis_Contig978.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig978 12842..13465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig978.5.1

>prot_P-littoralis_Contig978.5.1 ID=prot_P-littoralis_Contig978.5.1|Name=mRNA_P-littoralis_Contig978.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
AICDAQYRIRAWTMNCPGSQNDCTAFKVSDFPKLLEGLPKGYYIVRDAAY
PGSDVVLVPYPGTKVSESQDALDYYLSQCRIAIEQTFGILVRTWGILWRP
LELRLGSVAPLVESLVRLHNFCRDQ
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mRNA from alignment at P-littoralis_Contig978:12842..13465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig978.5.1 ID=mRNA_P-littoralis_Contig978.5.1|Name=mRNA_P-littoralis_Contig978.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig978:12842..13465+ (Pylaiella littoralis U1_48)
GCGATCTGCGATGCGCAGTACAGGATCAGGGCATGGACTATGAACTGCCC GGGAAGCCAGAACGACTGCACGGCTTTCAAGGTTTCCGATTTCCCGAAGC TCCTCGAGGGGTTGCCGAAAGGCTACTACATCGTGCGGGACGCGGCGTAT CCGGGTTCCGACGTGGTTCTTGTTCCGTACCCGGGGACAAAGGTGTCGGA GAGCCAAGATGCGCTGGACTACTACCTGTCTCAGTGCAGGATCGCCATCG AACAGACCTTCGGCATCCTGGTATGTTATAATTCTTAGCTTTAGTGCCCG CAGATGACCGACATTTAAGTCACCGGAAAATATTTAATGCTCACGTATGA AGCACGCAGCATTTACGCGGCATTGATGCGTAAGTCCACGCGGGAGGTTT ACTCATTTTCGGTACGGGTTGTGCGTGAATTAGCTCTGAACCGTGTAAAA CACGCGCTCACGAGCAGATGGCGATTCCATGCTTTCTTCGCTGCTGTTGT CTTTCTCCATGCTGACAAGGTGAGGACGTGGGGTATCCTGTGGAGGCCGC TGGAGCTCCGGCTGGGCAGTGTTGCTCCGCTCGTCGAGAGTCTTGTCCGG CTGCACAACTTCTGCCGAGATCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig978:12842..13465+

>mRNA_P-littoralis_Contig978.5.1 ID=mRNA_P-littoralis_Contig978.5.1|Name=mRNA_P-littoralis_Contig978.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig978:12842..13465+ (Pylaiella littoralis U1_48)
GCGATCTGCGATGCGCAGTACAGGATCAGGGCATGGACTATGAACTGCCC
GGGAAGCCAGAACGACTGCACGGCTTTCAAGGTTTCCGATTTCCCGAAGC
TCCTCGAGGGGTTGCCGAAAGGCTACTACATCGTGCGGGACGCGGCGTAT
CCGGGTTCCGACGTGGTTCTTGTTCCGTACCCGGGGACAAAGGTGTCGGA
GAGCCAAGATGCGCTGGACTACTACCTGTCTCAGTGCAGGATCGCCATCG
AACAGACCTTCGGCATCCTGGTGAGGACGTGGGGTATCCTGTGGAGGCCG
CTGGAGCTCCGGCTGGGCAGTGTTGCTCCGCTCGTCGAGAGTCTTGTCCG
GCTGCACAACTTCTGCCGAGATCAA
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