mRNA_P-littoralis_Contig978.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig978.4.1
Unique NamemRNA_P-littoralis_Contig978.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 2.250e-49
Identity = 85/165 (51.52%), Postives = 113/165 (68.48%), Query Frame = 1
Query:    1 VYSEPILADGSCRPSFRMGHDEFMVLVDMLRPELESNPDMGRLRDGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARAMKAIIACKELDSRWPKNQTEFASIEEGFRDRSTNGVMAKCVGAMDGIFIRVTRPISRDTHEPNSFYSGHKKGFGMNFQ 495
             Y++P++ DG+ R  FRM + EF +L DMLRP+LE N  MG LR+G +PVE+Q+   LR+LAGG + ++  G+VIA+STAY    R + AI   +ELD  WP+ +         +R RSTNGV+  CVGAMDG+F+R+T+P  R    P SFYSGHKKGFGMNFQ
Sbjct:   55 TYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218          
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.850e-49
Identity = 81/166 (48.80%), Postives = 112/166 (67.47%), Query Frame = 1
Query:    1 VYSEPILADGSCRPSFRMGHDEFMVLVDMLRPELESNPDMGRLRDGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARAMKAIIACKELDSRWPKNQTEFASIEEGFRDRSTNGVMAKCVGAMDGIFIRVTRPISRDTHEPNSFYSGHKKGFGMNFQV 498
             Y +P+L D +    FRM +D+F VLVD LRP L+ N   G LR+GA+PVEYQV  TLRWLAGG +++   GHVIA+STAY   +  + A+ AC EL+ +WP+ + +           +   V+ KCVGAMDG+F+R+ +P +++  EPN +Y+GHKKGFGMNFQV
Sbjct:   59 TYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 223          
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 7.930e-46
Identity = 76/144 (52.78%), Postives = 105/144 (72.92%), Query Frame = 1
Query:   70 MVLVDMLRPELESNPDMGRLRDGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARAMKAIIACKELDSRWPKNQTEFASIEEGFRDRSTNGVMAKCVGAMDGIFIRVTRPISRDTHEPNSFYSGHKKGFGMNFQVM 501
            +VLVD LRP L+ N  MG LR+GA+PVE QV  TLRWLAGG +++   GHVIA+STAY   +  + A+ AC EL+ +WP+ + + A   E FR+RS+  V+ KCVGA DG+F+R+ +P +++  EPN +Y+GHKKGFGMNFQ +
Sbjct:   71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAV 213          
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.310e-45
Identity = 80/165 (48.48%), Postives = 110/165 (66.67%), Query Frame = 1
Query:    1 VYSEPILADGSCRPSFRMGHDEFMVLVDMLRPELESNPDMGRLRDGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARAMKAIIACKELDSRWPKNQTEFASIEEGFRDRSTNGVMAKCVGAMDGIFIRVTRPISRDTHEPNSFYSGHKKGFGMNFQ 495
             Y  P++ D + R  FRM + +FM L D+LRP+L+ +  MG LR+GA+PVE+Q+  TLR+LAGG + ++   +VIAKSTAY    R + AI   ++L+ +WP      A  E  +R RSTNGV+ +CVGAMDG+F+R+  P  +    P SFYSGHKK FGMNFQ
Sbjct:   59 TYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAEL-YRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222          
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.870e-42
Identity = 71/159 (44.65%), Postives = 103/159 (64.78%), Query Frame = 1
Query:    1 VYSEPILADGSCRPSFRMGHDEFMVLVDMLRPELESNPDMGRLRDGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARAMKAIIACKELDSRWPKNQTEFASIEEGFRDRSTNGVMAKCVGAMDGIFIRVTRPISRDTHEPNSFYSGHKKG 477
             + +P+L D +    FRM +D+F VL+D LRP L  N  MG LR GA+PVEYQ+  TLRWLAGG +++   GHVIA+STAY   +  + A+ AC EL+ +WP+ + +               V+ KCVGAMDG+F+R+ +P +++  EPN +Y+GH+KG
Sbjct:   59 THIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202          
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.710e-42
Identity = 68/127 (53.54%), Postives = 94/127 (74.02%), Query Frame = 1
Query:  118 MGRLRDGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARAMKAIIACKELDSRWPKNQTEFASIEEGFRDRSTNGVMAKCVGAMDGIFIRVTRPISRDTHEPNSFYSGHKKGFGMNFQV 498
            MG LR+GA+PVE QV  TLRWLAGG +++   GHVIA+STAY   +  + A+ AC EL+ +WP+ + + A   E FR+RS+  V+ KCVGAMD +F+R+ +P +++  EPN +Y+GHKKGFGMNFQV
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 126          
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.470e-23
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 VYSEPILADGSCRPSFRMGHDEFMVLVDMLRPELESNPDMGRLRDGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARAMKAIIA 279
             Y +P+L D +    FRM +D+F VLVD LRP L+ N  MG LR+GA+PVEYQV  TLRWLAGG  ++   GHVIA+STAY     A   I+A
Sbjct:   59 TYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMA 151          
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.080e-20
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  118 MGRLRDGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARAMKAIIACKELDSRWPKNQTEFASIEEGFRDRSTNGVMAKCVGA 390
            MG LR+GA+PVEYQV  TLRWLAGG +++   GHVIA+STAY   +  + A+ AC EL+ +WP+ + + A   E FR+RS+ G   +  G+
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGS 90          
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.950e-20
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  217 HVIAKSTAYQTAARAMKAIIACKELDSRWPKNQTEFASIEEGFRDRSTNGVMAKCVGAMDGIFIRVTRPISRDTHEPNSFYSGHKKGFGMNFQV 498
            HVIA+STAY   +  + A+ AC E++ +WP+ + + A   E FR+RS+  V+ KCVGAMDG F+R+ +P +++  EPN   +GHKKGFG NFQ 
Sbjct:    4 HVIARSTAYHETSTVINALNACSEVNCKWPEGE-DAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQA 96          
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.680e-20
Identity = 48/105 (45.71%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  187 GGEMHDIKQGHVIAKSTAYQTAARAMKAIIACKELDSRWPKNQTEFASIEEGFRDRSTNGVMAKCVGAMDGIFIRVTRPISRDTHEPNSFYSGHKKGFGMNFQVM 501
            GG + ++  G V AKSTAY    R + AI   +E D  WP+           +R RSTN V+  CVGAMDG+F+ +  P  R    P  FYSGHKKGFGMNFQ +
Sbjct:   51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGV-YRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAV 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig978.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE2.250e-4951.52DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE3.850e-4948.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6B6_9PHAE7.930e-4652.78DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE1.310e-4548.48DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE1.870e-4244.65DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE3.710e-4253.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K540_9PHAE5.470e-2353.76DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5J9B3_9PHAE1.080e-2048.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYU2_9PHAE4.950e-2047.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCG0_9PHAE6.680e-2045.71DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig978contigP-littoralis_Contig978:9770..10270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0SZG7
PFAMsDDE_Tnp_4
Model size501
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.21e-16
EggNOG OGs2E3PU@1|root,2SAQU@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size501
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791897.4532866-CDS-P-littoralis_Contig978:9769..102701680791897.4532866-CDS-P-littoralis_Contig978:9769..10270Pylaiella littoralis U1_48CDSP-littoralis_Contig978 9770..10270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig978.4.1prot_P-littoralis_Contig978.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig978 9770..10270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig978.4.1

>prot_P-littoralis_Contig978.4.1 ID=prot_P-littoralis_Contig978.4.1|Name=mRNA_P-littoralis_Contig978.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=167bp
VYSEPILADGSCRPSFRMGHDEFMVLVDMLRPELESNPDMGRLRDGALPV
EYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARAMKAIIACKELDSR
WPKNQTEFASIEEGFRDRSTNGVMAKCVGAMDGIFIRVTRPISRDTHEPN
SFYSGHKKGFGMNFQVM
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mRNA from alignment at P-littoralis_Contig978:9770..10270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig978.4.1 ID=mRNA_P-littoralis_Contig978.4.1|Name=mRNA_P-littoralis_Contig978.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig978:9770..10270+ (Pylaiella littoralis U1_48)
GTGTACAGCGAGCCCATATTGGCAGACGGGAGCTGTAGACCGAGTTTCCG CATGGGCCACGACGAGTTCATGGTTTTGGTGGATATGCTTCGCCCCGAAC TGGAAAGCAACCCTGACATGGGCCGCCTCCGCGATGGCGCTCTCCCAGTA GAGTACCAGGTCGGAAATACTCTGCGATGGTTGGCCGGCGGTGAAATGCA CGACATAAAGCAAGGCCACGTGATCGCCAAGAGTACGGCGTATCAGACAG CAGCCCGCGCCATGAAGGCCATCATTGCCTGCAAGGAGTTGGATAGCCGG TGGCCCAAGAACCAGACGGAGTTCGCCAGCATCGAGGAGGGGTTCAGGGA CCGCAGCACAAACGGTGTGATGGCCAAGTGCGTGGGAGCCATGGATGGGA TTTTCATCCGAGTGACGAGGCCGATCTCTCGCGACACTCACGAGCCCAAC TCCTTCTACAGCGGTCACAAGAAGGGTTTCGGGATGAACTTTCAGGTAAT G
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Coding sequence (CDS) from alignment at P-littoralis_Contig978:9770..10270+

>mRNA_P-littoralis_Contig978.4.1 ID=mRNA_P-littoralis_Contig978.4.1|Name=mRNA_P-littoralis_Contig978.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig978:9770..10270+ (Pylaiella littoralis U1_48)
GTGTACAGCGAGCCCATATTGGCAGACGGGAGCTGTAGACCGAGTTTCCG
CATGGGCCACGACGAGTTCATGGTTTTGGTGGATATGCTTCGCCCCGAAC
TGGAAAGCAACCCTGACATGGGCCGCCTCCGCGATGGCGCTCTCCCAGTA
GAGTACCAGGTCGGAAATACTCTGCGATGGTTGGCCGGCGGTGAAATGCA
CGACATAAAGCAAGGCCACGTGATCGCCAAGAGTACGGCGTATCAGACAG
CAGCCCGCGCCATGAAGGCCATCATTGCCTGCAAGGAGTTGGATAGCCGG
TGGCCCAAGAACCAGACGGAGTTCGCCAGCATCGAGGAGGGGTTCAGGGA
CCGCAGCACAAACGGTGTGATGGCCAAGTGCGTGGGAGCCATGGATGGGA
TTTTCATCCGAGTGACGAGGCCGATCTCTCGCGACACTCACGAGCCCAAC
TCCTTCTACAGCGGTCACAAGAAGGGTTTCGGGATGAACTTTCAGGTAAT
G
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