mRNA_P-littoralis_Contig978.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig978.1.1
Unique NamemRNA_P-littoralis_Contig978.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig978.1.1 vs. uniprot
Match: D7G0B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B2_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.100e-14
Identity = 47/89 (52.81%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 YPKGKRSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANEGPA-PSREKRPRDC-PQKSDPSPPEHRGGAREGSGRPKGSFGPKR 261
            YP+  + ARDWVAE  FA+AWRPS    G      AD  + + + PA P REKRPRDC P  S    P  +  AREG GRPKGSFG KR
Sbjct:   15 YPESNKKARDWVAEENFAKAWRPSHSS-GSAVLSKADARLRSEDKPALPPREKRPRDCQPTCSAIHTPPAKRAAREGEGRPKGSFGRKR 102
[Close]
BLAST of mRNA_P-littoralis_Contig978.1.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-9
Identity = 44/92 (47.83%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:    4 PKGKRSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANEGPA---PSREKRPRDCPQ---KSDPSPPEHRGGAREGSGRPKGSFGPKR 261
            PKG+ + RDW AE  FA  WRPS        S     + DA+ G A   P REKRPRDC      ++ +P    GGAR GSGRPKGS+G KR
Sbjct:   67 PKGRNTGRDWAAEDRFAATWRPS-------FSSGNVPHTDASAGEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKR 151
[Close]
BLAST of mRNA_P-littoralis_Contig978.1.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.230e-9
Identity = 44/92 (47.83%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:    4 PKGKRSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANEGPA---PSREKRPRDCPQ---KSDPSPPEHRGGAREGSGRPKGSFGPKR 261
            PKG+ + RDW AE  FA  WRPS        S     + DA+ G A   P REKRPRDC      ++ +P    GGAR GSGRPKGS+G KR
Sbjct:   67 PKGRNTGRDWAAEDRFAATWRPS-------FSSGNVPHTDASAGEAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKR 151
[Close]
BLAST of mRNA_P-littoralis_Contig978.1.1 vs. uniprot
Match: D7G5I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I2_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.120e-9
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    4 PKGKRSARDWVAEVTFARAWRPSR-----ERVGGDSSMDADVNMDANEGPAPSREKRPRDC-PQKSDPSPPEHRGGAREGSGRPKGSFGPKR 261
            PKG+++ RD  AE  F   WRPS      ER+         +  +A    A +R KRPRDC    ++ + PE RGG REG+GRP+GSFGPK+
Sbjct:   62 PKGRKTGRDRGAEHKFFEDWRPSEGGNVVERLRDSRHR---IEAEAEAEVAAARTKRPRDCHASAAEHARPEKRGGKREGAGRPRGSFGPKK 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig978.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0B2_ECTSI3.100e-1452.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAS5_9PHAE1.200e-947.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE1.230e-947.83Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G5I2_ECTSI5.120e-943.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig978contigP-littoralis_Contig978:158..424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size267
Hectar predicted targeting categoryother localisation
Exons1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791897.318644-CDS-P-littoralis_Contig978:157..4241680791897.318644-CDS-P-littoralis_Contig978:157..424Pylaiella littoralis U1_48CDSP-littoralis_Contig978 158..424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig978.1.1prot_P-littoralis_Contig978.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig978 158..424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig978.1.1

>prot_P-littoralis_Contig978.1.1 ID=prot_P-littoralis_Contig978.1.1|Name=mRNA_P-littoralis_Contig978.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
YPKGKRSARDWVAEVTFARAWRPSRERVGGDSSMDADVNMDANEGPAPSR
EKRPRDCPQKSDPSPPEHRGGAREGSGRPKGSFGPKRNR
back to top

mRNA from alignment at P-littoralis_Contig978:158..424+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig978.1.1 ID=mRNA_P-littoralis_Contig978.1.1|Name=mRNA_P-littoralis_Contig978.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig978:158..424+ (Pylaiella littoralis U1_48)
TATCCCAAGGGCAAAAGATCTGCTCGCGACTGGGTGGCCGAGGTGACCTT
CGCACGAGCATGGCGGCCAAGCCGTGAGCGTGTGGGTGGTGACAGCAGCA
TGGATGCTGATGTCAACATGGATGCAAACGAAGGGCCTGCTCCTTCCCGA
GAAAAGCGGCCACGGGACTGTCCGCAAAAATCGGATCCATCACCTCCTGA
ACACCGTGGTGGAGCACGCGAAGGTAGCGGCAGGCCGAAGGGAAGCTTCG
GCCCGAAGAGGAATCGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig978:158..424+

>mRNA_P-littoralis_Contig978.1.1 ID=mRNA_P-littoralis_Contig978.1.1|Name=mRNA_P-littoralis_Contig978.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig978:158..424+ (Pylaiella littoralis U1_48)
TATCCCAAGGGCAAAAGATCTGCTCGCGACTGGGTGGCCGAGGTGACCTT
CGCACGAGCATGGCGGCCAAGCCGTGAGCGTGTGGGTGGTGACAGCAGCA
TGGATGCTGATGTCAACATGGATGCAAACGAAGGGCCTGCTCCTTCCCGA
GAAAAGCGGCCACGGGACTGTCCGCAAAAATCGGATCCATCACCTCCTGA
ACACCGTGGTGGAGCACGCGAAGGTAGCGGCAGGCCGAAGGGAAGCTTCG
GCCCGAAGAGGAATCGT
back to top