mRNA_P-littoralis_Contig974.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig974.12.1
Unique NamemRNA_P-littoralis_Contig974.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig974.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig974contigP-littoralis_Contig974:22883..23420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size538
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791894.473764-CDS-P-littoralis_Contig974:22882..232421680791894.473764-CDS-P-littoralis_Contig974:22882..23242Pylaiella littoralis U1_48CDSP-littoralis_Contig974 22883..23242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791894.4882457-UTR-P-littoralis_Contig974:23242..234201680791894.4882457-UTR-P-littoralis_Contig974:23242..23420Pylaiella littoralis U1_48UTRP-littoralis_Contig974 23243..23420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig974.12.1prot_P-littoralis_Contig974.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig974 22883..23242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig974.12.1

>prot_P-littoralis_Contig974.12.1 ID=prot_P-littoralis_Contig974.12.1|Name=mRNA_P-littoralis_Contig974.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MLGQARAEGCAWDESICALAALYGHLDVLQWAREKGCPWGVETCSMAAKR
GRLSVLRWAREHGCPWNEDTCALASGGGHLHVVRWARARDCPWDDRTRFL
ATRGGHLSMLQWAMDNGCP*
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mRNA from alignment at P-littoralis_Contig974:22883..23420+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig974.12.1 ID=mRNA_P-littoralis_Contig974.12.1|Name=mRNA_P-littoralis_Contig974.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=538bp|location=Sequence derived from alignment at P-littoralis_Contig974:22883..23420+ (Pylaiella littoralis U1_48)
ATGCTCGGACAGGCGAGGGCCGAAGGCTGCGCATGGGACGAATCGATCTG
CGCCCTGGCCGCCCTTTACGGCCACTTGGATGTTCTCCAGTGGGCAAGGG
AAAAGGGGTGCCCGTGGGGCGTCGAGACGTGCAGCATGGCGGCAAAGAGG
GGGCGCCTGAGCGTTCTTCGTTGGGCACGGGAGCACGGCTGTCCTTGGAA
CGAAGACACTTGTGCTTTGGCTTCCGGTGGAGGGCATCTGCACGTAGTAC
GTTGGGCGAGGGCGCGTGACTGCCCCTGGGACGATAGAACGCGTTTTCTG
GCTACCCGAGGGGGTCATTTGAGCATGCTCCAGTGGGCCATGGATAACGG
CTGCCCTTAAAACCCGACAGAGAGTGCACTGGTTTCGTTTGGCCTGGTGC
ATGTACAAGCATCGTGCAGCTGTCTGCTGGTGGATGAGGTGTGCACCTCA
ATTTCATTGCAAACATGGTGACATTACCAGGAAATGAAATAGAAGTCCTT
TTAGCCATTGTTCGATTGAAACCGCAAAGATAGTCAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig974:22883..23420+

>mRNA_P-littoralis_Contig974.12.1 ID=mRNA_P-littoralis_Contig974.12.1|Name=mRNA_P-littoralis_Contig974.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig974:22883..23420+ (Pylaiella littoralis U1_48)
ATGCTCGGACAGGCGAGGGCCGAAGGCTGCGCATGGGACGAATCGATCTG
CGCCCTGGCCGCCCTTTACGGCCACTTGGATGTTCTCCAGTGGGCAAGGG
AAAAGGGGTGCCCGTGGGGCGTCGAGACGTGCAGCATGGCGGCAAAGAGG
GGGCGCCTGAGCGTTCTTCGTTGGGCACGGGAGCACGGCTGTCCTTGGAA
CGAAGACACTTGTGCTTTGGCTTCCGGTGGAGGGCATCTGCACGTAGTAC
GTTGGGCGAGGGCGCGTGACTGCCCCTGGGACGATAGAACGCGTTTTCTG
GCTACCCGAGGGGGTCATTTGAGCATGCTCCAGTGGGCCATGGATAACGG
CTGCCCTTAA
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