mRNA_P-littoralis_Contig973.22.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig973.22.2
Unique NamemRNA_P-littoralis_Contig973.22.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig973.22.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig973contigP-littoralis_Contig973:86403..88824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size541
Hectar predicted targeting categorymitochondrion
Exons3
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791894.226395-UTR-P-littoralis_Contig973:86402..866111680791894.226395-UTR-P-littoralis_Contig973:86402..86611Pylaiella littoralis U1_48UTRP-littoralis_Contig973 86403..86611 -
1680791894.2371068-UTR-P-littoralis_Contig973:88259..883001680791894.2371068-UTR-P-littoralis_Contig973:88259..88300Pylaiella littoralis U1_48UTRP-littoralis_Contig973 88260..88300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791894.2471688-CDS-P-littoralis_Contig973:88300..883251680791894.2471688-CDS-P-littoralis_Contig973:88300..88325Pylaiella littoralis U1_48CDSP-littoralis_Contig973 88301..88325 -
1680791894.2626655-CDS-P-littoralis_Contig973:88558..888241680791894.2626655-CDS-P-littoralis_Contig973:88558..88824Pylaiella littoralis U1_48CDSP-littoralis_Contig973 88559..88824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig973.22.2prot_P-littoralis_Contig973.22.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig973 88301..88824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig973.22.2

>prot_P-littoralis_Contig973.22.2 ID=prot_P-littoralis_Contig973.22.2|Name=mRNA_P-littoralis_Contig973.22.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
RSTSYGRYFPSLFIFKKLLSRGSLYSPSLASYSTLNRHRENQAVKIVGIV
STSSVSTRAFQTIAHTPVTSGLAAMLCCGADAKVADRKRSNALSRS*
back to top

mRNA from alignment at P-littoralis_Contig973:86403..88824-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig973.22.2 ID=mRNA_P-littoralis_Contig973.22.2|Name=mRNA_P-littoralis_Contig973.22.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2422bp|location=Sequence derived from alignment at P-littoralis_Contig973:86403..88824- (Pylaiella littoralis U1_48)
CGGTCGACGTCCTACGGGCGATACTTTCCTTCGTTGTTTATTTTTAAAAA
ATTGCTGTCTCGCGGTTCCCTCTACTCGCCTTCTCTCGCAAGTTATTCAA
CGCTCAACAGGCATCGCGAAAACCAGGCTGTGAAAATCGTTGGTATTGTG
TCCACATCCAGTGTAAGTACGCGGGCGTTCCAGACCATCGCACATACCCC
CGTAACATCAGGGCTGGCGGCAATGCTCTGTTGTGGAGCAGACGCAAAGG
TTGCGGATCGCAAAAGGTGCGCACAGAAAGTCGTTCGGGGTTTTGGGCGA
CATGGTTTCGAACTTCTAACCTCTCACGGGTGTGTGTATGCTTCGAACTT
CCTTGTCATTTCGTTGCGTCCTTGAATTGTCGGTTCGAGGCACACGCATT
ACGTCTCCCGTCAGGAAATACCCTTCGACTTCTCCCCTCACATGGTTTAC
AGAATGCCGCCCGCATGTGCGTCATTTCGTAATCCCCTCAACTCGCCAGG
TCAAATGCCCTTTCAAGGTCGTGATATGCTGGGCTGTCCGAGACGAAGCG
CCTCGCATAACCCAGGCGAGTTTTCGTACGGGTACATGAACGGCCATTCG
TTGGCGTGTGTGTCGTTGTTCCGAAACTAACTTATTGTCGCGTGGCGAGT
TGATTTCTGCAGATTCGGCGGTTAGCAGTATGTTTCGATCGTTGTTGGTG
CAACCCTCTAAACATGGTATGTTACATTCAACGTCGTTTTAAGCGTGACG
TGGTTTGTCCATGTTTATGAAAATTTCAATATGTATGGAAATTCCGAGGA
GGCGTTTGTCCATATTTTGTCCATAAATGTGAAACCGGCTTGGGCCTAAT
AAAGTGGCCCAAATGCTTTCAAGATTTCTGGAAATTTATACATATTTTTA
TGTTTTTCATGTCATCAAAGCATTGTCCGTATCAGTGTAGCAGCACGCCG
TGAGACCTCCGCGTCATGGCGAGTTCGCAGGGGCATCGAGGAAAACGTAG
AGCCAACGCGTCAACGGTTCGGCCGCTGGTTATAGTGGACGGAGTTGGCC
AGGCGTGCCAAAACAAATATTTGGTTGAGAGTTGCCCTTGTACAATTTCT
GAATGTACTCGCATAATGATGGTGAAGTGCGGGGAACAAAAAATGCAGCC
AAGACATGTGCACGACAGCACCACAGCAGCGTCAGTTCTTGTTACATATA
GCAGCACTCAACGCGAAACCTTCGTGGGTATTGTCTCATTTTGCAACTCT
CCATCAGCAAGGCGTTGCGCTAGAGGTGGGGTCATTCAATCGACAGACTG
TATCAGTATCGATCGCGGTGTATCTCATGTGTCATGTGCTGCGTACTGTG
CTGCTGCTGCTGCTGCTGTACCCCTGTAGCCGCTCTCCTAGGCCGTAGAA
CAAGCGGTCTACTTTCAACTTTCGAAGCACTACGAAGTGGTGAGATTCGT
ATGTCGGCGGACGTTTGAAGATATTTCCAACAAGGAGCGACGCTTCTGTC
TGTCGACTGAATGATCCCGCCTCCGATCCAACCACAGAGAACAGTGAATG
GTTGCGACCGCCGAGAAGGTTTGACGTTGATAGGTGGTGTAGGAAACGAG
AAGATGACGGTTGTGTTGGTGTGTATGTCCTTCACAACACTTGGGATGTG
TGTGGTTGATCGCGCGTACGTCGCCTCTCATACATTTATTTCCAGAACTT
TCCGGCGACCATATTTTCATGAATATGGAATTGGCTTCTAAATGTTTAGA
ATGAGCTCGCTGTATTCCATCAATATGGATCCATATTTATTTTCCGTGTT
TAGTTATGGAATATGTCTAAAACGACCCTAACACGAACATTCCTGCAGTT
TTCTCTGCAAAGGATGCCTGCTCCGAAGTATCTACGAGTGTTTTGCTCAT
ACCCGAGGGAACATTGCACACCCGGGGCGGTTCGCGTAGCTTCATGCTGG
ACGAACATGCACGCCTGTTATGCTCCGACTTCAAGTGCCAAATACGTTGC
GAACAAAAAATGCAGGGACACACTTCACCAATTCATATGGAGCAATCAGT
GCGGACTTTTGCGTTGAAGACGGTTCTTTGAAATTTCCAAGGGCGCAAAG
TGCGCACAAAAACAACCGACAGATATGACTTTATTGGACTACGTGGATAC
ACCTTTTTATTTGACGCCCACCTCGTGTTCAATCTTTCCCAAAATCGTGC
GCCCGACGTGTAGACAACTTTTCGGCACAATCACGCCATCCAAGACCCCG
CTCGTGACGACCCGCGCTCGATCCCGGATCACGTCGTGCTAGACAGACTC
GAGGATATTCGTTTCTGGGCTCTTTGTGACGTCCCCGTGCCCAAGATGCT
CGATATGCTTCGGCGCGACACAGAGTCCCTGGTTACTCGAGGCGTGCTCG
GTGCGCCGTTGAAACGAAAGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig973:86403..88824-

>mRNA_P-littoralis_Contig973.22.2 ID=mRNA_P-littoralis_Contig973.22.2|Name=mRNA_P-littoralis_Contig973.22.2|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig973:86403..88824- (Pylaiella littoralis U1_48)
CGGTCGACGTCCTACGGGCGATACTTTCCTTCGTTGTTTATTTTTAAAAA
ATTGCTGTCTCGCGGTTCCCTCTACTCGCCTTCTCTCGCAAGTTATTCAA
CGCTCAACAGGCATCGCGAAAACCAGGCTGTGAAAATCGTTGGTATTGTG
TCCACATCCAGTGTAAGTACGCGGGCGTTCCAGACCATCGCACATACCCC
CGTAACATCAGGGCTGGCGGCAATGCTCTGTTGTGGAGCAGACGCAAAGG
TTGCGGATCGCAAAAGGTCAAATGCCCTTTCAAGGTCGTGA
back to top