mRNA_P-littoralis_Contig972.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig972.8.1
Unique NamemRNA_P-littoralis_Contig972.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig972.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig972contigP-littoralis_Contig972:15787..16470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791893.412485-CDS-P-littoralis_Contig972:15786..158681680791893.412485-CDS-P-littoralis_Contig972:15786..15868Pylaiella littoralis U1_48CDSP-littoralis_Contig972 15787..15868 +
1680791893.4266877-CDS-P-littoralis_Contig972:16032..160881680791893.4266877-CDS-P-littoralis_Contig972:16032..16088Pylaiella littoralis U1_48CDSP-littoralis_Contig972 16033..16088 +
1680791893.4368036-CDS-P-littoralis_Contig972:16445..164691680791893.4368036-CDS-P-littoralis_Contig972:16445..16469Pylaiella littoralis U1_48CDSP-littoralis_Contig972 16446..16469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig972.8.1prot_P-littoralis_Contig972.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig972 15787..16469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig972.8.1

>prot_P-littoralis_Contig972.8.1 ID=prot_P-littoralis_Contig972.8.1|Name=mRNA_P-littoralis_Contig972.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
AAAVEIIFLNEDCPHKQVRDLWHLGPAASHYKHRTQSTKHTGSHHESCTA
CMCC
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mRNA from alignment at P-littoralis_Contig972:15787..16470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig972.8.1 ID=mRNA_P-littoralis_Contig972.8.1|Name=mRNA_P-littoralis_Contig972.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig972:15787..16470+ (Pylaiella littoralis U1_48)
GCTGCTGCTGTGGAGATCATTTTTTTGAACGAGGACTGCCCTCACAAGCA
AGTGCGGGATCTCTGGCATCTCGGACCTGCAGGTGATCTGCCCGTAGATA
TATATGGAGGCGTTCTTAATACCACAGCAGTCGTGGTGTTTCGGGGATTC
GGGGATTTGGAGACGTTCTACGCTTTCATGTTTCAAGCTCATGTGCTGTG
CTGCGCCTTTCGTCCGCCCTCACCTCTCATTGTACTGCTGATCCAGCATC
ACACTACAAACATCGAACTCAATCTACCAAGCATACAGGTTCGCATCATG
AGGTGAGAACACTTTCCTGCTGGTGCGTTTTGACCTCTCCCGTGCGTGCT
GTACATTTCGTCGGGGATGTGTGACATGTGCATTTATAGCGAAATAGACC
ATTTTACTCCCAGCGCTGCACTGCTTTTTTAGGGAAGAGTGCCGATGTCT
GACACTTTGCATCATACTTCGAAGTATAATAATACTTCGAATATGCGCTG
ATACGCCGACGGAACAGGCTAGCGAAGTTTGGACCGGCCTCTACTGAGAG
CCAGTACGGGCATGCCCCATCCATATATATACATACGAGGTCGATATGTA
TGTACCTTGATGGTGGAACTCCATTTATATTTGCGTCGTACTCAACCGAT
CCTCTACAGTCTTGCACAGCATGTATGTGCTGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig972:15787..16470+

>mRNA_P-littoralis_Contig972.8.1 ID=mRNA_P-littoralis_Contig972.8.1|Name=mRNA_P-littoralis_Contig972.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig972:15787..16470+ (Pylaiella littoralis U1_48)
GCTGCTGCTGTGGAGATCATTTTTTTGAACGAGGACTGCCCTCACAAGCA
AGTGCGGGATCTCTGGCATCTCGGACCTGCAGCATCACACTACAAACATC
GAACTCAATCTACCAAGCATACAGGTTCGCATCATGAGTCTTGCACAGCA
TGTATGTGCTGC
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