mRNA_P-littoralis_Contig972.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig972.4.1
Unique Name	mRNA_P-littoralis_Contig972.4.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig972.4.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig972.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig972	contig	P-littoralis_Contig972:4584..12265 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	363
Hectar predicted targeting category	other localisation
Exons	4
Cds size	363

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791893.3365653-CDS-P-littoralis_Contig972:4583..4650	1680791893.3365653-CDS-P-littoralis_Contig972:4583..4650	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig972 4584..4650 +
1680791893.3504999-CDS-P-littoralis_Contig972:9320..9469	1680791893.3504999-CDS-P-littoralis_Contig972:9320..9469	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig972 9321..9469 +
1680791893.3616765-CDS-P-littoralis_Contig972:9830..9891	1680791893.3616765-CDS-P-littoralis_Contig972:9830..9891	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig972 9831..9891 +
1680791893.375914-CDS-P-littoralis_Contig972:12179..12265	1680791893.375914-CDS-P-littoralis_Contig972:12179..12265	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig972 12180..12265 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig972.4.1	prot_P-littoralis_Contig972.4.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig972 4584..12265 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig972:4584..12265+
coding sequence from alignment at P-littoralis_Contig972:4584..12265+

protein sequence of mRNA_P-littoralis_Contig972.4.1

>prot_P-littoralis_Contig972.4.1 ID=prot_P-littoralis_Contig972.4.1|Name=mRNA_P-littoralis_Contig972.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MTTRDGLGAATQSKNHHKRAARVTMPLVHLSTLCTMRQAQQRSLRRQGYH
SATLRTAIQCGTTNVHPRRQRLLCVLRPPGPILKSPVTVPRSGVDHQGAR
LERSTFYQAGAQKTWTRDQG*

mRNA from alignment at P-littoralis_Contig972:4584..12265+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig972.4.1 ID=mRNA_P-littoralis_Contig972.4.1|Name=mRNA_P-littoralis_Contig972.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7682bp|location=Sequence derived from alignment at P-littoralis_Contig972:4584..12265+ (Pylaiella littoralis U1_48)
ATGACGACTCGGGACGGACTGGGCGCCGCAACTCAATCCAAAAACCATCA
TAAACGTGCAGCTAGAGGTGCGCTCCCTTCTCTTTCCACTTTGGTGGGAT
CTGGTACTGGCTATTCGGAAAAGAGTTCCCCTCCCCGATTGCCCCCTCCC
TTCATCGCCGTCTCAACGATCATACTCCTTTATCAGACACGATGAAAAGT
GTTTTCAAGCGGAAGACAAGCAACAAGCGAGTATCATGCGCCTACATACC
GATTATGACTGCCTGGGACCAACTGGTCTTCCACACAGCTCGGCAGTACA
CAGCAGGCACAGCACAGCACAATGCAATACAACACAAGACAAGACAAGAC
AAGACAAGACAAGACAAGACAGCACATCACAGCACAGCACAAGACAAGAC
AAGACTAGACTAGACAAGACAAGACACGACAAGACAAGACAAACCCAGCA
CAACACAACACACACAGCACAGTACAGCACAAGGCAGACGCGACACAGAA
GAGTCCCCAAGCGTCGAATTCCAGCACGCCACGGACAACGAGCACACGAC
AAAGCCTAGTCCACTTCTCACACCCGGTGCGTAAGTTTTCTGCGGGGCCC
TGGGCTATCGACTAAAAGGGACATGGCGTTTTCAGGCCAAAATCAAAAAT
ACCGCAATTATACTGTTAACTCTTACATTGGCAGGGAAAAAAAAAGAAAA
TAAAAAGCAGAGTGACAAGGCGCAAGGCACAACTACCCTTGTTCTATGAC
GCTTGCAGGCTTACCCTGAAGAGCTCCGTGGTGAGGGTGCGCATGTCTGT
CACGATTCCGTCCACCTTGGACCGCGCGTCCTCCGTGCTCCGCCCCTGCC
TCTCCAACTCTCCCACCAGGTCGTCCAGGACCCACACGCTGTGTGCATGT
ATGTATGTACGTGTGCGTGTGTATGTGAATGTTTGTGTGTGCGCGTGCAT
GCATGTATGTATATGTGGGCGGTTTGGGTCGGCGATTGCACGGCAAAGGA
AAAGGCGCATGTTGTGGGGGGTAAGGGCATGTGTACGTTTGTGTGCGTAT
GTGTGCGTTGTCGTTGGCAGTGGTAGTGTTGGTGTTGGTGGTGGTGGTTG
TGGTGGTGGTGGTGGTGGTCGAGTTGTTGTTGTCGTTGTCGAGTTGGACA
AAACAGGGGTATACATTACCCCGCCCTTTTCAGACACATGTGGGAGTATG
GTTTAGCAAAAACACACCCGCGTGAGCTGCCCACGAGTGGCCTAAGCCTC
TCAGAGCTCCATTCTAGCGCGGCGGCAGCACGCTCATGTACCATTCCGAG
CCTAAACAACAGCTTCGGCGGGTTTTTCGGGCACGTTTTACCGGCCCAAC
AGCATTGAGGCGCTCACCGGTCCACCCGCAGACCCCCGTCTATCTGATGT
CCCGGGGAGGCATACCCCGACATCTCTACTTTTTGTTCATCTAATACCCC
CGTTTGTCGACAAGTTCCCCCCCTTTGTTCAAAAAGTATCATATGCCCCA
AAATCTGTCCGAGGGGATCCCCTCGTACTTGTTCATGTTGGAAGTCATCC
ACTACACATCCACGTCATCGCAGCATTCGAACAGCCACCGTGCGTCGTTA
CCACCGTCAACCGCTTCAGGAACACGCACGGCACAACACCATCAAGACTT
TCCGGTCTCCCCACAGCTTACCGTACTATCCGTCCGACGTGCGCCTCACA
CACACACACACACACACACGCGGAAAGCGCCCTGTCTGCCTCGATTACCG
CACGCACCAACCATTGTGGTAGGCGACCTACTCGCAGACGCGAAAGCGAA
TTAAAAATTGCGTCTGGAGTGTCAAGCTGATTGCTGACGGGACTGGTACG
ATAGTGCCGAGTGGACAGTAGAGGCTCTGACAGGAGGAAGGGAAGAGCTG
CACCGCTGCACGGCACAACACGCAACAGACCTCTGCTCTGTAAAAATAGA
AAAGCGATCGATTTAAAGCAGCAAATTCCAAATGTATTGCCAATAGCCTT
GTACAGGGTACGTATCGACGGGGACTCACTTATCCTCCTCTCGGAATGTC
TCGTCTTCCGCCTGTCTCGCGGTGTTGGTGATGTGAGCAAGAGGATCTTC
GTCGACAAACGCTCCTCCTCCTCCTCCTCCCGCTCCTCCTCCTCCGGCAC
CGCCAATGCCGCCGCGGTCAACAGGGTACTCCTTCGCGGCTCGCAGCAGC
AGGACGGTGTCGAAGAGGTAGACCCGGATACACCCCACTGACGGCGGACC
GGTACACAACACACAGAGAGAGACACAGACACGGCAGCAGAGGGGTACAC
ATGAAAAGAGGCTTGCCGAAGACGGCAGTACCGGTATGCGATAGCAAGCA
ACAGGAGCTAGAGAGAGCGCATGTGCATACCGTAAACTACACAAGATAAC
ACACCCACATAAGATACCACACCCCCTACAGAATACGACACCCCGGTGAT
AATTTTGGGCGCATTTTTGCCATCATCGATTTACCACCGGGGCTACACAA
GATACCACACCCCCGGTGATAATTTTAGTTACGCCGCATACATTCACGGG
GCCCCTCCTTTCTACCACCGGGGTGATAGAACATCTGCCCCGTGGGCACA
CAACACCACACCCTGTGTGCGGGGGGAACACCCCGTGTGGAAACCTCCAA
GAACATGAACATTGAATGGGCAGAACGCCTCCGGTGTCCCCGCTTCTCCG
ACAACTGCTTCGACCGCAGCAGTACAGCAGGCGCCACAGATCACGTCGTT
CTTTCAACTCGAGCGCACTTCTCCTACACAAGCGACTCCTGCCACGAGTG
CTTCTGCCTGTTGTTTTCTTAGCCGCGTACAGTGCAACGTTGTTGTGTTT
CGTGGTCTTGGACTATTGGTCGTGCTTGTTGCAGCAGCCTGGTACGTTTT
TGAAGAGGGCAGGACAGATGGCGCACTCTGTGGCGCCGTCTCGCGTCATA
TCGGGCGAGGTATCTTCGATTCAATTTCCACTTTTTGATGCTCCATCAAG
CCAAGAGAGCTGACATTATAAATTCGAGCTTTCTCGGCTTTGAGTGGGGT
CAGTCATCGTCGACGTAATGTGCTCAGGAGTTTTGTCCCCGCAATAACCT
AACGTGTGTGCGGACGTTCGGAAAGGTATCACCCCCCGCAATACCACACC
GCTTCAAGTGTTCGGCAGCAGCGGCTCAACTCTACAGGAAAGGAGTGTTT
TGGTATCCCCCCCCAAGCACGACCTGCGGGTGTTCGGAGGTTATCACACC
CCCTGGTTTATCACACCCCCAAACACACCCTGTGGGTGTTCGGACGTGCT
ATCAAACCCCCTGGTTTATCACACCCCCTGGTTTATCACACCCCCAAACG
TATCCTGTGGGTGGTCGGACGTGCTATCACACCCCCTGGTTTATCACACC
CCCTGGGGGCCGCCGCGACCAGCACTCTATCACCGGGGCTACACAAGATA
CCACACCCCCCCACAATACCACACCCGGTGATAATATTTTCAAGCGCTCA
AATGTATCACCGGGGGTGTGTTATCTTGTATAGTTTACGGTACTTCGAAG
CATCACTTTTGAAGCCGAAGTAGCGCACGCGAGAAGGGCGTCCTTCATCA
TACCTACAACATGCGATTGAATGATCGGTGTGTGTGTGTGCTTCTATGTG
TGCGTGTGTCTGTGTCTGTGTATGTGCTGCATATTTCACACCAGCGGCGG
GTTCTTGAGTCCATATCCATGGTCCTGTGGGGAAGTGTATGTGTGTGTGT
TGTTATCCCTTTAATTGGACGCCACTCTACACCTTTCGGGTAGGTAGACG
CTCCAACCGGGGTCACACAGGGGGAAGTCAACACAGGAGTTTTTTTTTTT
TTTCTCCACTTCCCTCTGCGGTGCTTGCCTTTTTGGTTAAGCTTTTATCA
CGAGAAAGGGGACAGCAACCCCTTTCCCTCGTCGATGGTACGATCGAATT
TTGTTTACTCACGAATTGATCGCTTTCCACTTTCACGCGCTATGTGAGAA
AAAGCCCCAGATCGTGTTACTGCACTGGGATTTGAACTCACGCGTGAATG
TCAGAAGGTTGCATAGATAACCAACTGAACCACCGGGGCAACCGTATAGC
GATATATTCCAGCGCCCACTGGGGTCAAAATGATTATGATGGTTCGTGCG
TTTACATGCATTTTGTGAAACAAAAAACAACCGACGAAACCCTCGCGGTG
TGTGACTTAAACCAAGCGAACAGAATGGCGCTCAAACGCCGCAGGCGCCC
AATGGGCATGCGCATGATCTATGTGGTTTTTACACCCTTTGCTTGACGCG
TGGGAGTGAGAACTACAGGGTGGGGGCGGTACAAAAAAATCCCCGAGACA
AGCGTTTTGGATTTTTCTGCAAAGCGAGGAGGGCGGGGGAACGACTGACG
ACAGCATCGAAAGCTTATTCAAAACCACCAACACCAACGCCAACACCACT
AGCAACAACACCAACGCCAACACCAACAACAACAACATCACTAACAACAA
AAACAACAACGACAGCAACAACAACAACAACAACAACGACAGCAACAACA
ACAACAACAACAACAACGACAGCAACAAAAATAAAACTCTCAATTGTACA
GAGAATTTCCGAAAACACAAGCAGACCAGCAAAAAGGTCATAAAACGAAA
CAGATCCACGAGGAGAAGAAGAAGAAGAACGAATGAATGAATGAATGAAC
GCACCTAAGGGCACGTACGGCAGGAAAAAAACAACAGTCACGATGCCGCT
TGTTCATTTGTCCACCTTGTGCACCATGCGCCAAGCGCAGCAACGAAGTC
TCCGTCGCCAGGGATATCATTCAGCTACGCTACGCACCGCAATACAGTGT
GGAACAACAAACGTGCACCCGCGGCGGCAGCGATTACACACACGCACTAA
TAGTACGTGCACAAAAATGTGTAACCATAATATGATACCTGCCAAGGCGT
AGGCCCGGAGATGAAACTTGCGCCCCTCCGCCAGCAGTGGCCTCTCGAGG
TACTCCTGCACTCGCCAGCAGAAAGAAAGAGCGTGGTCGTCGCGGTATTG
TGTGGTGTGTCAATAAAAAATAGAAATGCGAGGTTATTCAAGGTTGTAGT
TTTCTTTTTGCATGAGCAGCAGCAACAGCAGCAGCAGCAGTTCACTCACG
CTAAGCGTCGAGCCTAAAAAAAATAAAAGGTGTGCGCACGACGGCTGGCT
CAATGGTTCCGCTCGAAAGGGTAGTTAGTAACTAGCATGATATCCTCCTC
TGTGTGCTTCGCCCTCCCGGACCAATTTTGAAGAGCCCGGTTACGGTTCC
ACGTTCAGGTGAGAGACCGTGCCAACATGAAACGGCACGTTTATTTTACG
TCTCTCGACGACTGGACAATTTCCAACGCTGAGGGATGACCCCTTGTCGA
CCCCCACTTCCCCTACTCTCTTGCTGAAAGGATATCGACCATGAAAAATC
GGTCCGGGGGCGGGCGGGGGGGGGGGTGGGGTGGGGGGTGGGGGTGGGGG
TGGTGTGGGGGGGCTTACGCAACAAGAGGGGCCCCAAGGTATTTTACACA
AAAGCGGGTGCATGCAATGAACTTCGCTGGCTGGGCTGTCTGTGTTGTAG
TGAATAGTGCGGTGCCCCCCTCTCTACTACGAGGTGAATACTGTACGTAC
GCGATGGTTGCAGCGCTGACCGATCATTCACCATTGTCGGCCTCGTACCC
TTCCTCTCTTGCTGTATTATACAGTAACAGCAGTCGAGCCTTCAAAATCG
GTTCGGGGGGACGGGGGGGGGTGATATACCACGTCCCGTTCGGCTTTTAC
GTCGCAGTTAAGGTTGCACTGTAGAGGATACGTTAGAACAACCGTGAATG
GGTTGGAGGAGATTTGCGAGTTGTCGACGAAAACGCCTGATTATTGTTTG
GGTTTCCGACCTCAATCTTTCGTACGAATCCATGATACAATGGCAACAGG
TATGTTCTTGACGCTCCAGAAATCCGTCCGGTGGGGGAGCGGCAACACGG
AGGGTATTTTTATCACACGGTGCCCCGAATTTTGATTATTTCCCCCCGCA
CGTGTATGATGAAGAATAAATACATGGTATGGCATGCACCCTTCAAAACA
ACGCCGTTATTTTTGGTTCATTCTGTGCGTGCACCTCGTGCACGTCAAAA
CATACCCTGAGTGCCTGGTATTTACAAAGCACAGGAGTCGCTGCTGCACA
CGACGCATGTCTAATTGAGAGAGTCGCCACGCTCAAAACCATCACCCGAC
GCACATGCCTCCCATATCATATCGTACGAATAAAGAGCATACCGTGCGAA
CAAGCAACACACCAAAACAAAAGGGGAAGTCTTTCATTCACAAACACCCC
GGTGCTGAGAGGCCTTGTCTTACAACATTCCCAAAACGATTCGGTCCTTT
TCATAAAAGTACAAGTATACTACTTCGAAGCACCGCACGCAACCACAGCC
GCACCTgcaGCACCCACTCTCTGATGTCCGGGGCCCCGTGAACCGCCTCC
TTGAGGGTCTCGAAATCCTCACCGAGGGCCAGACCGGCCCCCTTGTTCAG
CGTCGACGGCTTCAGAATCCATCTCCCGTAGCGCTGcCCCCCCTGCCCCC
CCCTCCTCCCCCTCCTCCTCCTCCTCCTCCCCCCTCTATCCAATCTTTGG
CGTCTCCAAGGCACCAGTCTAGCCTAGTCGCCAGGCTGACGCTCTGCCTG
ACCCCAAGGTCGGACCCGAACGCCGCGATATCTCCTGCACCGCCATCCAT
CCATCCATTCATAAAACGTGCACCGAACCAAGATCGACGGTCACAGGTGG
CGAGTGTGTGTGAGTGTGAGTGTGTGTGTGTGCTTGCGTGCTTGCGCGCG
TCCGTGCCCGGGAGGCGGCAACGACGGTAGTGGTAGTGGTTGAGGGAGGG
GAGGTGGGGGGCACCGTCTGCTGGTCGGCTATTTGGGTCGCGGTGCGGGC
CCCCCCGGAGCGCCGAACAGGGAATAAATCGATACAAAATTTGGCCAGGG
TTGACCCCGTCGAGTGAGGAACACCCACCACGCACGCGTTTTTTTTTATT
CTATTCGGTCCGTAGGTTGAGACCGTTCGTCGCCACTATCATACTGTACT
AAAAGGGGAGAAATGTTGGTACCTGTTTTATCTCGGCCTCGAAAGCGGTT
GGAGGAAAAGTAAGTTTGATTTTGTCAGGGACCTGCGCTGCCGGTTTCTC
GTTGCACCGTCCCAAAACTTTCTAGCTACTGCTGCAGTCCAGCCGGAGGA
TTGAGGCGTGTGAAGTCATCGTCGCAAGCACGAAAAACGGAACTTCTTCC
ACGTCCACGCAAAGCCCCGGGACAACGAATAGCACCGGCAGCAGCAGCAG
CAGCAGCAGCAGCAAGAGCCGCCACATAACTGACCAAAACAATGCCAGCG
ACAGTTTGCAGCAAGCAGCGGGCCTGAACCGACAACGTGGCGAAGGCAAA
GCAGCAACAAAAACTCACGGCATCTAGACAATTAATTATTCAATCAATCA
ATCAATCGATCAATCGATCAATCGATCAACCAATCATTCAATCCACCCCA
TTCACCTCCAAGATTGAAGGTCATCTTGTCGTCGAACGCTTCCCAGGTGT
CGATCACCAAGGTGCGCGGCTGGAGAGAAGCACGTTTTACCAAGCGGGGG
CGCAGAAAACATGGACCAGGGACCAGGGGTAG

Coding sequence (CDS) from alignment at P-littoralis_Contig972:4584..12265+

>mRNA_P-littoralis_Contig972.4.1 ID=mRNA_P-littoralis_Contig972.4.1|Name=mRNA_P-littoralis_Contig972.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig972:4584..12265+ (Pylaiella littoralis U1_48)
ATGACGACTCGGGACGGACTGGGCGCCGCAACTCAATCCAAAAACCATCA
TAAACGTGCAGCTAGAGTCACGATGCCGCTTGTTCATTTGTCCACCTTGT
GCACCATGCGCCAAGCGCAGCAACGAAGTCTCCGTCGCCAGGGATATCAT
TCAGCTACGCTACGCACCGCAATACAGTGTGGAACAACAAACGTGCACCC
GCGGCGGCAGCGATTACTCTGTGTGCTTCGCCCTCCCGGACCAATTTTGA
AGAGCCCGGTTACGGTTCCACGTTCAGGTGTCGATCACCAAGGTGCGCGG
CTGGAGAGAAGCACGTTTTACCAAGCGGGGGCGCAGAAAACATGGACCAG
GGACCAGGGGTAG