mRNA_P-littoralis_Contig972.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig972.12.1
Unique NamemRNA_P-littoralis_Contig972.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig972.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig972contigP-littoralis_Contig972:22369..24430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791893.4669144-CDS-P-littoralis_Contig972:22370..224491680791893.4669144-CDS-P-littoralis_Contig972:22370..22449Pylaiella littoralis U1_48CDSP-littoralis_Contig972 22371..22449 -
1680791893.4806883-CDS-P-littoralis_Contig972:24347..244301680791893.4806883-CDS-P-littoralis_Contig972:24347..24430Pylaiella littoralis U1_48CDSP-littoralis_Contig972 24348..24430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig972.12.1prot_P-littoralis_Contig972.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig972 22371..24430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig972.12.1

>prot_P-littoralis_Contig972.12.1 ID=prot_P-littoralis_Contig972.12.1|Name=mRNA_P-littoralis_Contig972.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
AQHVCAAAYPKTTTRAAIRMQRVHPSQRINISAVLTVATLSFPLVVATKN
DPQN
back to top

mRNA from alignment at P-littoralis_Contig972:22369..24430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig972.12.1 ID=mRNA_P-littoralis_Contig972.12.1|Name=mRNA_P-littoralis_Contig972.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2062bp|location=Sequence derived from alignment at P-littoralis_Contig972:22369..24430- (Pylaiella littoralis U1_48)
GCACAGCATGTATGTGCTGCCGCGTATCCCAAGACGACGACGAGAGCTGC
AATTCGCATGCAGCGCGTTCACCCAAGCCAGAGGTACATGCTGAGTTACT
TCGGGGGACAGTATAATAGCCGCCGCAGTCGCGTACAGTATACTAGAACA
CATGGTGATACACGCGGTTCCCGATTAGCTATCCGCGTGGTACTTTTCGT
GTGCACACGCGGTGAGGCCGAAGAAACAAGGTTCACATGCCTACACTAAT
TTCGAGTGTGATCCGCGAAACCGTCATGTGACCGCGATATCGACGTCGAT
GACGACGACGACAAAGTCACAAATTCTTGGCGTACAGCGGAGAATATTGA
TTTTTCCGTCGGCGCATAAGCAGAGGGTGAAATCAGGCACAAACGAAGGG
ACAAGCGATACGTGGACGTGGCTCGACTACGATACTGAATCGAAGCAGCA
GGTACTACTGACAGGTTGTTTCGTCGCAATACCGGTATCATCGTGTGGAG
TTTTAGGGAGGAAATATATCGGTTTCGTGTGGAAATAATGTATGCGGCAT
TTTGCACCTTCCCGAGTTTCGATGTTTCATGAGCACCTTTGCCCTGTGTG
TAGACAACAGGAGGGGTTGTGTTGAGCCTGATAACTTCAGGGGAGCTGCA
ACGGTACATTTCTGACGAGTCATGGAAACAAAGCACAGAAGTGTGGATGT
TTATTTTTCTTTGCGTTCATTGGTATCATAAATCTTCTCCAGATTATCGT
CTCGATAGAAAGTGAGGCAAATACATTGACATGTATGTGTGTGTTTGTGA
TGTTAACTAAAGAAATACCAACATGAGGGCCAGGTTCTTCTGCATGCACA
CTCCTGTAAAATATTGCGTTGATTGTTTAAGCAAGCTTCAGCGTCGCGGA
GGAACGCACTCCAATGCAATGACGTGACACAGCTATATAGCTATCTTGCT
TCTTCAATTTTCTGTTGCCGGGATGGCCGGCCTTCAGTTACCTCTCCGTA
CTACAGCAACTGCTGTGTAACGACGTTCAGACTCTTTCCGCGCCCTCTAC
GTGGGGGTTGGTTCGGTTTGGTGTTCACCTTTGAGATATGGTAAGACCTG
CATCATTTCCGCCTTTACTCTAGGGACCCCCTACCGAGATACCAAAATCA
GTCACAGATGTCGATCGTACTGCCACTCTCCGCTTCAGGAAGCAATGTTA
ATATTTAATTTCGATAAATCTGCCAACGTGGGCAGTTTGTTTTTGCGCTG
CCAACGTTGGCAGATTTAATAATTGTACCAACGGTGTGTCATCAATTTTG
ACGCCATCGTCCTCATCTCGTGACACGAGCACCCAGCGGTCAAAGGAGAA
GTCGGGACGGCTTGCTGCGGCCTTGGGCTATCCTACTGGGAGCTTTATCG
TCGGCAAAAAACAAAAAAGGCCGCGTCACACATGTTTCTCCCCCCCTTTT
GTTTTGGTCGACGTGATGGCTCGTAGAAGGACAGATCAAAGCCTTAGCAA
ACCACCCTACCCTCTACTTTGGCCTCCGGATGCTCGTGTCACGAGATAAG
GGCGATGGCGTCGGAGTTGATGGCGAGCCGCTGGAAGGAGAATAAAACCT
GCAAACGTTGGCAACGAAAACAAATTCTGCCCACGGGCGATTCACCATGA
TTCATTAACATTCGATCAGAATCGAGTGGACAGCGACGTTGTGTCTTTCT
CACCTGCCCTAACGGCGTGTGCCTGCCATACAGGCTCATTATCGTGAGAT
AGAATTCGGGAGTGTCGCTAATGACGAGTGAAAGCCGCTCTACAAAAATG
AAATGAGATGCGCACATTGTGTACAAGTGTATGCTGGTGGTGCCACCTGC
ACTGAGTCTGCCACTTTCCTCTCTAAAAAAAGGGCCCGATTTGTCTAATA
TAGCAAGCAATCCCATCAACAATTTCAACACTGACCTTGTCTGCTTCCCG
TTGTTCATCGTCCGTCGCCTGTGCACTGCAGGATCAACATCAGTGCCGTG
CTAACCGTAGCTACACTGAGCTTTCCACTTGTTGTTGCGACCAAGAACGA
CCCGCAAAACTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig972:22369..24430-

>mRNA_P-littoralis_Contig972.12.1 ID=mRNA_P-littoralis_Contig972.12.1|Name=mRNA_P-littoralis_Contig972.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig972:22369..24430- (Pylaiella littoralis U1_48)
GCACAGCATGTATGTGCTGCCGCGTATCCCAAGACGACGACGAGAGCTGC
AATTCGCATGCAGCGCGTTCACCCAAGCCAGAGGATCAACATCAGTGCCG
TGCTAACCGTAGCTACACTGAGCTTTCCACTTGTTGTTGCGACCAAGAAC
GACCCGCAAAAC
back to top