mRNA_P-littoralis_Contig97.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig97.9.1
Unique NamemRNA_P-littoralis_Contig97.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig97.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig97contigP-littoralis_Contig97:136398..136733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size272
Hectar predicted targeting categorymitochondrion
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791888.2183356-CDS-P-littoralis_Contig97:136399..1364941680791888.2183356-CDS-P-littoralis_Contig97:136399..136494Pylaiella littoralis U1_48CDSP-littoralis_Contig97 136400..136494 -
1680791888.2292876-CDS-P-littoralis_Contig97:136558..1367331680791888.2292876-CDS-P-littoralis_Contig97:136558..136733Pylaiella littoralis U1_48CDSP-littoralis_Contig97 136559..136733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig97.9.1prot_P-littoralis_Contig97.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig97 136400..136733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig97.9.1

>prot_P-littoralis_Contig97.9.1 ID=prot_P-littoralis_Contig97.9.1|Name=mRNA_P-littoralis_Contig97.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
SVPASCRSVARLRDSAVVSAIGSGKLSFCRACSRLGRCCRPSVRARSRSV
VAGHQFEQVVVLWRVLAARPCCCRSVPASCRSVARLPGSA
back to top

mRNA from alignment at P-littoralis_Contig97:136398..136733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig97.9.1 ID=mRNA_P-littoralis_Contig97.9.1|Name=mRNA_P-littoralis_Contig97.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig97:136398..136733- (Pylaiella littoralis U1_48)
TCGGTTCCGGCAAGTTGTCGTTCTGTGGCGCGTCTTCGCGACTCGGCCGT
GGTGTCGGCCATCGGTTCCGGCAAGTTGTCGTTCTGTCGCGCGTGTTCGC
GGCTCGGCCGTTGTTGCCGGCCATCGGTTCGAGCAAGGTCTCGTTCTGTT
GTTGCCGGCCATCAGTTCGAGCAAGGTCTCGTTCTGTAGCGCGTAATCGC
TGCTCGGCCGTGTTGTTGCCGGCCATCAGTTCGAGCAAGTTGTCGTTCTG
TGGCGCGTCCTCGCGGCTCGGCCGTGTTGTTGCCGTTCGGTCCCGGCAAG
TTGTCGTTCTGTGGCGCGTCTTCCCGGCTCGGCCGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig97:136398..136733-

>mRNA_P-littoralis_Contig97.9.1 ID=mRNA_P-littoralis_Contig97.9.1|Name=mRNA_P-littoralis_Contig97.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig97:136398..136733- (Pylaiella littoralis U1_48)
TCGGTTCCGGCAAGTTGTCGTTCTGTGGCGCGTCTTCGCGACTCGGCCGT
GGTGTCGGCCATCGGTTCCGGCAAGTTGTCGTTCTGTCGCGCGTGTTCGC
GGCTCGGCCGTTGTTGCCGGCCATCGGTTCGAGCAAGGTCTCGTTCTGTT
GTTGCCGGCCATCAGTTCGAGCAAGTTGTCGTTCTGTGGCGCGTCCTCGC
GGCTCGGCCGTGTTGTTGCCGTTCGGTCCCGGCAAGTTGTCGTTCTGTGG
CGCGTCTTCCCGGCTCGGCC
back to top