mRNA_P-littoralis_Contig97.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig97.18.1
Unique NamemRNA_P-littoralis_Contig97.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig97.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig97contigP-littoralis_Contig97:179596..183422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3609
Hectar predicted targeting categoryother localisation
Exons2
Cds size2703
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791888.2620246-UTR-P-littoralis_Contig97:179595..1800891680791888.2620246-UTR-P-littoralis_Contig97:179595..180089Pylaiella littoralis U1_48UTRP-littoralis_Contig97 179596..180089 -
1680791888.3313706-UTR-P-littoralis_Contig97:183010..1834221680791888.3313706-UTR-P-littoralis_Contig97:183010..183422Pylaiella littoralis U1_48UTRP-littoralis_Contig97 183011..183422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791888.3050668-CDS-P-littoralis_Contig97:180089..1804711680791888.3050668-CDS-P-littoralis_Contig97:180089..180471Pylaiella littoralis U1_48CDSP-littoralis_Contig97 180090..180471 -
1680791888.3205335-CDS-P-littoralis_Contig97:180689..1830101680791888.3205335-CDS-P-littoralis_Contig97:180689..183010Pylaiella littoralis U1_48CDSP-littoralis_Contig97 180690..183010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig97.18.1prot_P-littoralis_Contig97.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig97 180090..183010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig97.18.1

>prot_P-littoralis_Contig97.18.1 ID=prot_P-littoralis_Contig97.18.1|Name=mRNA_P-littoralis_Contig97.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=901bp
MEPNFCGVVWEDESVGSEREPFTAGVCSREAVKECRKLVPRGSLLGGGEF
ESDSLMRYCSKLVLSGPRISAFAGGVPSGDGDREATEANHMSPGNFRSSM
RLFLAANDEGFRDGHLDAPPLLRRRRRLEVVHDLLSGLSLLSFTTLAALL
PAAFLEGNCLHPAVKVVVTSCLTAVLVAVFICVRQRLRQGSDGPVEIINT
EDVRSQYTHLASRGFAYRLEVCLSTIWGSRVIFGEGSSAGSAFSLSTVRT
PEAGNGTAVSSYHLRHLPRDANVVSSVIWMWYRGVSKWDSAPPDLLVRTA
FIAGYGNFLAQGVVRASNSGELSPLAAATLGTVVRGKGVEGVGVDPNVQE
LLGGRGSELLHTGGAKVQLGWSNGQLISAHADRVCHVHFPNLTLYIAQPS
MVGGLTRTCEAYNRSFSLFYRSRSTGHKYDKAMEAVGALNTSCAIASLLL
LGVGTGWFSQVVGWNLLGELGGLLAMVTFSFWEGPLGALEFSDPFHTAVS
LGTSAPSYTKAVLWSEALGGVGGMTALATGQVSNPYLAVLVQAASSVLVN
IGMRMLSNKIADCAGVYLFAAYTTEIAVEAYLVFNELSRVEGCAQVILGM
LLVTAVLESVQLLVVGSCVLWSVGLKSRWPFMPQYTADEIDQTPAIREGW
LSALRLTGSGQEGGARDWLEWRGGAAPPEKSYLCPSPPSGDLANRLGING
NRVLHTEQQCYHFSNLLLLASPVTEDTCTAAVMRDVVGGWSAFTLSGPGK
DYSPVLGGTPHPAVYALASRSMRSDSRLLAFLAFSTSRREASDDYPEEDP
VLHSAPQPVEAVDTRGSRIDRVRIATERPGNHRIVVTMVLQMYKWLGQRT
MGISHFGPHIIRSNHAIAVAMYCVRAGLSVDHQAVKDLFYFGLILHASQG
*
back to top

mRNA from alignment at P-littoralis_Contig97:179596..183422-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig97.18.1 ID=mRNA_P-littoralis_Contig97.18.1|Name=mRNA_P-littoralis_Contig97.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3827bp|location=Sequence derived from alignment at P-littoralis_Contig97:179596..183422- (Pylaiella littoralis U1_48)
AACAACAGGACCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAC
CAGCACCAGCAACGGCGGCAACAACCAATTCCTTCGTGATCCCTGTACAA
GATCAAGCCATTGGCAGAAAGCCGAGCCGTTACGGTACACCTCTGGCTGC
TCGGTGGCTGCTTGTTGCTGAGCAGGAAGACGAGAAGGTGTGGGTGTGTG
TGTTGTTCGTTGGATGGTCTTCATTCCTCGAGGCCGGGTTACTGTATTCC
ACAACACGCTGGAGTTGATCGGCCGGACCTCCCTCCACTATCTCGCTGGT
GGTGCCGAAGGAGGGCTACCGCGGGGTGGGGTCAAGGTCCGCGCTGCCTT
CTGGGGCAAGAGTTGGCTGGTCGTGCTCCGCAAGGTGCGTTGGTTTCCCG
GGTTCTGGCCCAATGGAACCCAATTTCTGTGGTGTAGTCTGGGAGGACGA
GTCGGTCGGTAGCGAAAGAGAACCGTTCACGGCTGGCGTTTGCTCCCGGG
AAGCGGTGAAGGAATGTCGCAAATTGGTCCCGAGGGGGTCACTGCTAGGT
GGTGGGGAGTTCGAATCTGACTCTCTCATGAGATACTGTTCGAAGCTGGT
CTTGTCGGGTCCTAGAATCTCAGCCTTTGCGGGTGGCGTCCCGTCCGGCG
ACGGGGACAGGGAAGCAACCGAAGCTAACCACATGAGTCCCGGAAACTTT
CGTTCTAGTATGAGGCTGTTCCTTGCGGCGAACGATGAGGGCTTTAGGGA
TGGGCACCTAGACGCTCCTCCACTGCTTCGTAGGCGCAGGCGGCTTGAAG
TGGTTCACGACCTCTTATCGGGGCTGAGCCTTTTGTCCTTCACGACATTG
GCTGCTCTGCTCCCGGCCGCCTTTCTTGAGGGGAACTGCCTGCACCCTGC
TGTGAAGGTTGTCGTCACAAGTTGCCTGACTGCAGTCCTCGTAGCAGTGT
TCATCTGCGTGCGCCAGAGATTGAGACAGGGGTCTGACGGGCCTGTCGAG
ATAATCAACACTGAAGACGTACGTTCACAATATACCCACCTAGCGAGCAG
AGGCTTCGCCTACCGTCTGGAAGTGTGCCTTTCAACTATCTGGGGGAGCA
GGGTGATCTTCGGAGAGGGGAGCAGTGCTGGGTCAGCCTTTTCGTTGTCG
ACCGTCAGGACTCCTGAGGCGGGGAACGGTACAGCCGTCAGTTCGTATCA
CCTCCGTCATCTACCTAGGGACGCGAACGTGGTATCCTCTGTTATCTGGA
TGTGGTATCGGGGGGTCTCTAAGTGGGATTCAGCACCTCCAGATTTGCTT
GTGAGGACAGCATTTATCGCGGGGTATGGAAACTTCTTGGCGCAAGGGGT
TGTCCGGGCCAGCAATTCTGGGGAACTCTCTCCCTTGGCGGCAGCCACAT
TAGGGACAGTCGTGCGCGGTAAGGGGGTCGAAGGGGTCGGGGTAGACCCT
AACGTGCAAGAACTACTAGGAGGAAGAGGCTCTGAACTTCTCCACACTGG
AGGGGCCAAAGTACAGCTAGGGTGGAGTAACGGGCAATTGATCAGTGCAC
ATGCCGACCGGGTCTGTCATGTGCACTTCCCGAACCTCACGCTTTACATT
GCCCAGCCTTCCATGGTTGGCGGCCTAACTCGGACTTGCGAAGCCTACAA
TCGCTCATTTAGCCTATTCTACCGCAGCAGGAGCACTGGGCACAAGTACG
ACAAGGCCATGGAAGCGGTCGGTGCGCTTAATACTTCTTGCGCGATAGCC
TCGCTTCTACTCCTGGGAGTAGGCACTGGATGGTTCTCCCAAGTGGTCGG
CTGGAACCTCCTAGGGGAGCTGGGTGGTCTACTAGCAATGGTCACCTTCT
CCTTTTGGGAGGGCCCGTTGGGGGCGCTGGAATTCTCTGACCCTTTTCAC
ACCGCCGTGTCGCTCGGGACTTCCGCTCCCTCGTACACGAAGGCAGTGCT
GTGGTCAGAGGCTCTCGGGGGGGTCGGGGGTATGACGGCGCTAGCAACTG
GTCAGGTCTCTAACCCCTACTTGGCGGTGCTGGTGCAGGCGGCGTCATCA
GTGCTTGTGAATATCGGAATGCGCATGCTGTCGAATAAAATTGCAGATTG
CGCAGGAGTGTACCTTTTCGCGGCCTACACGACCGAAATAGCGGTCGAAG
CCTACCTGGTTTTTAACGAGCTATCGCGGGTCGAGGGGTGTGCGCAGGTG
ATACTGGGGATGCTGTTAGTGACGGCGGTGCTGGAGAGTGTTCAACTCCT
CGTGGTTGGGTCATGCGTACTATGGTCAGTGGGGTTGAAGTCGAGGTGGC
CTTTTATGCCGCAGTACACGGCCGATGAGATAGACCAGACGCCTGCAATC
CGTGAGGGTTGGTTGTCCGCGTTGCGGTTGACGGGGAGCGGCCAAGAGGG
AGGAGCCCGTGACTGGCTAGAATGGCGCGGCGGAGCGGCGCCACCCGAGA
AAAGTTACCTGTGTCCCTCACCGCCATCCGGCGACTTGGCTAACAGGCTC
GGCATAAACGGCAACCGGGTCCTACACACCGAGCAGCAGTGTTATCATTT
TTCGAATCTACTATTGTTAGCCTCGCCGGTTACGGAAGACACTTGCACTG
CGGCCGTGATGAGAGACGTGGTAGGAGGCTGGTCAGCCTTCACCTTGAGC
GGCCCGGGGAAGGATTACTCGCCGGTCCTGGGCGGGACACCCCATCCCGC
CGTCTACGCACTGGCCAGCCGGAGCATGCGCAGGCGAGGTAAGGGAGAGA
CAGGACAGCCCACTACTATCCTGACCTCGATGTGTTAAGAGACAGGCCGA
GGGGCAGGCCGTATTAACAAGGAGGGACGCCCCCCGGAGATCACTGCAGG
CGTAGGGTTAGAATCCGTTTGTGCTGTTTTTTCACCTCTCGCAACATTTG
CGCTTTCTTCGCTTGCTGCTCAATCCGTTTGCGCTGCTCATCCACCTTCA
GCGACAGCCGCTTACTCGCATTCCTAGCCTTCTCCACCTCCAGACGGGAG
GCATCCGACGACTACCCCGAAGAGGATCCCGTACTGCACTCGGCCCCGCA
ACCGGTGGAGGCCGTCGATACCCGCGGCTCGCGAATCGATCGAGTTCGGA
TTGCAACGGAGCGCCCTGGGAACCACCGCATTGTAGTGACGATGGTACTG
CAAATGTACAAGTGGTTGGGGCAGCGTACCATGGGCATTTCGCATTTTGG
CCCCCATATAATCCGTTCCAATCACGCGATCGCGGTGGCAATGTATTGCG
TTCGAGCCGGTTTGTCTGTGGATCACCAAGCAGTGAAGGATCTTTTTTAC
TTTGGCTTAATTTTACACGCAAGTCAAGGCTGATTCGCCGAAGTCGTGTC
TTGTCATGACTCGCTTCGGTGGTGTCAAAGCCTCGCTCCGTGAGAATAGA
GGGGGTAGGGGGGCAGGCTTTCGGGGAGAAGAAAGAGACGCTGGGTGACA
TTAAAGAAGTATGTTTTTCGGGTATCTTTGCATCCGAAGATTTCAATCCC
GACAAACCAAAGACTAAAGCAGGTGGTGACGGGGGTTGAAGGCGGTTGAG
ATGGATGAGGAAGAGAAGGCTCTTCTCAAAAAGCTGCGAATGGCTCGCAT
GGCAGCTGAGCATGCGAATACAGAGGCAAAGAAGGGGTTATCGAGAAGTT
TGTCGACAAGGTTGTGAAGCCGGATTGTGGTGACAAGATGGGGTCCGCGG
CGTTGTGCTTGCGTCTCGCGCGAGTGCATTTTCCAGAGTAAATCGGATGG
TGTTGGAAGCCCAAGCGGAGAAGGACGGAGAAGGAGTATGTCTGAAACGT
GAAGGGGTGAATACACGACCATTCTCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig97:179596..183422-

>mRNA_P-littoralis_Contig97.18.1 ID=mRNA_P-littoralis_Contig97.18.1|Name=mRNA_P-littoralis_Contig97.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2703bp|location=Sequence derived from alignment at P-littoralis_Contig97:179596..183422- (Pylaiella littoralis U1_48)
ATGGAACCCAATTTCTGTGGTGTAGTCTGGGAGGACGAGTCGGTCGGTAG
CGAAAGAGAACCGTTCACGGCTGGCGTTTGCTCCCGGGAAGCGGTGAAGG
AATGTCGCAAATTGGTCCCGAGGGGGTCACTGCTAGGTGGTGGGGAGTTC
GAATCTGACTCTCTCATGAGATACTGTTCGAAGCTGGTCTTGTCGGGTCC
TAGAATCTCAGCCTTTGCGGGTGGCGTCCCGTCCGGCGACGGGGACAGGG
AAGCAACCGAAGCTAACCACATGAGTCCCGGAAACTTTCGTTCTAGTATG
AGGCTGTTCCTTGCGGCGAACGATGAGGGCTTTAGGGATGGGCACCTAGA
CGCTCCTCCACTGCTTCGTAGGCGCAGGCGGCTTGAAGTGGTTCACGACC
TCTTATCGGGGCTGAGCCTTTTGTCCTTCACGACATTGGCTGCTCTGCTC
CCGGCCGCCTTTCTTGAGGGGAACTGCCTGCACCCTGCTGTGAAGGTTGT
CGTCACAAGTTGCCTGACTGCAGTCCTCGTAGCAGTGTTCATCTGCGTGC
GCCAGAGATTGAGACAGGGGTCTGACGGGCCTGTCGAGATAATCAACACT
GAAGACGTACGTTCACAATATACCCACCTAGCGAGCAGAGGCTTCGCCTA
CCGTCTGGAAGTGTGCCTTTCAACTATCTGGGGGAGCAGGGTGATCTTCG
GAGAGGGGAGCAGTGCTGGGTCAGCCTTTTCGTTGTCGACCGTCAGGACT
CCTGAGGCGGGGAACGGTACAGCCGTCAGTTCGTATCACCTCCGTCATCT
ACCTAGGGACGCGAACGTGGTATCCTCTGTTATCTGGATGTGGTATCGGG
GGGTCTCTAAGTGGGATTCAGCACCTCCAGATTTGCTTGTGAGGACAGCA
TTTATCGCGGGGTATGGAAACTTCTTGGCGCAAGGGGTTGTCCGGGCCAG
CAATTCTGGGGAACTCTCTCCCTTGGCGGCAGCCACATTAGGGACAGTCG
TGCGCGGTAAGGGGGTCGAAGGGGTCGGGGTAGACCCTAACGTGCAAGAA
CTACTAGGAGGAAGAGGCTCTGAACTTCTCCACACTGGAGGGGCCAAAGT
ACAGCTAGGGTGGAGTAACGGGCAATTGATCAGTGCACATGCCGACCGGG
TCTGTCATGTGCACTTCCCGAACCTCACGCTTTACATTGCCCAGCCTTCC
ATGGTTGGCGGCCTAACTCGGACTTGCGAAGCCTACAATCGCTCATTTAG
CCTATTCTACCGCAGCAGGAGCACTGGGCACAAGTACGACAAGGCCATGG
AAGCGGTCGGTGCGCTTAATACTTCTTGCGCGATAGCCTCGCTTCTACTC
CTGGGAGTAGGCACTGGATGGTTCTCCCAAGTGGTCGGCTGGAACCTCCT
AGGGGAGCTGGGTGGTCTACTAGCAATGGTCACCTTCTCCTTTTGGGAGG
GCCCGTTGGGGGCGCTGGAATTCTCTGACCCTTTTCACACCGCCGTGTCG
CTCGGGACTTCCGCTCCCTCGTACACGAAGGCAGTGCTGTGGTCAGAGGC
TCTCGGGGGGGTCGGGGGTATGACGGCGCTAGCAACTGGTCAGGTCTCTA
ACCCCTACTTGGCGGTGCTGGTGCAGGCGGCGTCATCAGTGCTTGTGAAT
ATCGGAATGCGCATGCTGTCGAATAAAATTGCAGATTGCGCAGGAGTGTA
CCTTTTCGCGGCCTACACGACCGAAATAGCGGTCGAAGCCTACCTGGTTT
TTAACGAGCTATCGCGGGTCGAGGGGTGTGCGCAGGTGATACTGGGGATG
CTGTTAGTGACGGCGGTGCTGGAGAGTGTTCAACTCCTCGTGGTTGGGTC
ATGCGTACTATGGTCAGTGGGGTTGAAGTCGAGGTGGCCTTTTATGCCGC
AGTACACGGCCGATGAGATAGACCAGACGCCTGCAATCCGTGAGGGTTGG
TTGTCCGCGTTGCGGTTGACGGGGAGCGGCCAAGAGGGAGGAGCCCGTGA
CTGGCTAGAATGGCGCGGCGGAGCGGCGCCACCCGAGAAAAGTTACCTGT
GTCCCTCACCGCCATCCGGCGACTTGGCTAACAGGCTCGGCATAAACGGC
AACCGGGTCCTACACACCGAGCAGCAGTGTTATCATTTTTCGAATCTACT
ATTGTTAGCCTCGCCGGTTACGGAAGACACTTGCACTGCGGCCGTGATGA
GAGACGTGGTAGGAGGCTGGTCAGCCTTCACCTTGAGCGGCCCGGGGAAG
GATTACTCGCCGGTCCTGGGCGGGACACCCCATCCCGCCGTCTACGCACT
GGCCAGCCGGAGCATGCGCAGCGACAGCCGCTTACTCGCATTCCTAGCCT
TCTCCACCTCCAGACGGGAGGCATCCGACGACTACCCCGAAGAGGATCCC
GTACTGCACTCGGCCCCGCAACCGGTGGAGGCCGTCGATACCCGCGGCTC
GCGAATCGATCGAGTTCGGATTGCAACGGAGCGCCCTGGGAACCACCGCA
TTGTAGTGACGATGGTACTGCAAATGTACAAGTGGTTGGGGCAGCGTACC
ATGGGCATTTCGCATTTTGGCCCCCATATAATCCGTTCCAATCACGCGAT
CGCGGTGGCAATGTATTGCGTTCGAGCCGGTTTGTCTGTGGATCACCAAG
CAGTGAAGGATCTTTTTTACTTTGGCTTAATTTTACACGCAAGTCAAGGC
TGA
back to top