mRNA_P-littoralis_Contig97.101.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig97.101.1
Unique NamemRNA_P-littoralis_Contig97.101.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig97.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig97contigP-littoralis_Contig97:578497..578863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size367
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791888.6126444-UTR-P-littoralis_Contig97:578496..5785151680791888.6126444-UTR-P-littoralis_Contig97:578496..578515Pylaiella littoralis U1_48UTRP-littoralis_Contig97 578497..578515 +
1680791888.648218-UTR-P-littoralis_Contig97:578818..5788631680791888.648218-UTR-P-littoralis_Contig97:578818..578863Pylaiella littoralis U1_48UTRP-littoralis_Contig97 578819..578863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791888.628312-CDS-P-littoralis_Contig97:578515..5788181680791888.628312-CDS-P-littoralis_Contig97:578515..578818Pylaiella littoralis U1_48CDSP-littoralis_Contig97 578516..578818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig97.101.1prot_P-littoralis_Contig97.101.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig97 578516..578818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig97.101.1

>prot_P-littoralis_Contig97.101.1 ID=prot_P-littoralis_Contig97.101.1|Name=mRNA_P-littoralis_Contig97.101.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MRDVFSTLVCVSLSASDFFCCRQEVHRTPRSDMLSSERRGTCGETYISNK
ARSVFCGRVRVSRSFDRRHRRGGTSIFAGLEPMSSLSNDEFRIVTFVYPE
*
back to top

mRNA from alignment at P-littoralis_Contig97:578497..578863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig97.101.1 ID=mRNA_P-littoralis_Contig97.101.1|Name=mRNA_P-littoralis_Contig97.101.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=367bp|location=Sequence derived from alignment at P-littoralis_Contig97:578497..578863+ (Pylaiella littoralis U1_48)
CGACGGATAGCAAGTGTCGATGCGTGATGTGTTTAGTACGTTGGTGTGCG
TGTCCTTGTCTGCGAGTGATTTTTTTTGTTGTAGACAGGAAGTACATAGG
ACCCCACGGTCAGATATGTTGAGTAGTGAGCGACGAGGAACGTGCGGCGA
AACGTATATTTCGAACAAAGCACGTTCTGTATTTTGTGGCAGGGTGAGGG
TTTCTCGAAGTTTTGACAGGCGTCATCGTCGAGGTGGGACGAGTATATTC
GCGGGTTTGGAGCCCATGTCATCTCTGTCGAATGACGAGTTCCGCATTGT
TACCTTTGTGTATCCTGAATAAAATTTCGAAGAAAAAAGAACGGAAACAC
ACGTTCGTGAGCAGGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig97:578497..578863+

>mRNA_P-littoralis_Contig97.101.1 ID=mRNA_P-littoralis_Contig97.101.1|Name=mRNA_P-littoralis_Contig97.101.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig97:578497..578863+ (Pylaiella littoralis U1_48)
ATGCGTGATGTGTTTAGTACGTTGGTGTGCGTGTCCTTGTCTGCGAGTGA
TTTTTTTTGTTGTAGACAGGAAGTACATAGGACCCCACGGTCAGATATGT
TGAGTAGTGAGCGACGAGGAACGTGCGGCGAAACGTATATTTCGAACAAA
GCACGTTCTGTATTTTGTGGCAGGGTGAGGGTTTCTCGAAGTTTTGACAG
GCGTCATCGTCGAGGTGGGACGAGTATATTCGCGGGTTTGGAGCCCATGT
CATCTCTGTCGAATGACGAGTTCCGCATTGTTACCTTTGTGTATCCTGAA
TAA
back to top