mRNA_P-littoralis_Contig96.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig96.4.1
Unique NamemRNA_P-littoralis_Contig96.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig96.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig96contigP-littoralis_Contig96:16083..16794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size712
Hectar predicted targeting categoryother localisation
Exons1
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791873.3543987-UTR-P-littoralis_Contig96:16082..164131680791873.3543987-UTR-P-littoralis_Contig96:16082..16413Pylaiella littoralis U1_48UTRP-littoralis_Contig96 16083..16413 -
1680791873.3895283-UTR-P-littoralis_Contig96:16689..167941680791873.3895283-UTR-P-littoralis_Contig96:16689..16794Pylaiella littoralis U1_48UTRP-littoralis_Contig96 16690..16794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791873.371218-CDS-P-littoralis_Contig96:16413..166891680791873.371218-CDS-P-littoralis_Contig96:16413..16689Pylaiella littoralis U1_48CDSP-littoralis_Contig96 16414..16689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig96.4.1prot_P-littoralis_Contig96.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig96 16414..16689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig96.4.1

>prot_P-littoralis_Contig96.4.1 ID=prot_P-littoralis_Contig96.4.1|Name=mRNA_P-littoralis_Contig96.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MKWAAAASAKVDGTPGSYQAYTAFVERQERELQAFVRGPAPKDPLAGLGV
THPLIWSRVEKKLDTKMRLARKGVVVLAKNKGGTNEPAQPS*
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mRNA from alignment at P-littoralis_Contig96:16083..16794-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig96.4.1 ID=mRNA_P-littoralis_Contig96.4.1|Name=mRNA_P-littoralis_Contig96.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=712bp|location=Sequence derived from alignment at P-littoralis_Contig96:16083..16794- (Pylaiella littoralis U1_48)
GGGGCTGACTTTAGGGGCTCCGTGGGGGATGATGGCCAGGACATCCTCTC
ACAGGGTTCAAAAATCACCCAAGGGAAAGTGTACGCTGACTTCGTTGCGA
AAAGCATGAAGTGGGCTGCTGCCGCGTCAGCGAAAGTTGATGGGACCCCG
GGGTCGTACCAAGCTTATACAGCATTCGTAGAGAGGCAGGAGCGTGAACT
TCAGGCGTTCGTGCGGGGGCCAGCGCCTAAGGATCCATTGGCTGGGCTAG
GGGTAACCCACCCATTAATCTGGTCAAGAGTAGAAAAGAAACTAGACACA
AAGATGCGCCTGGCACGGAAGGGGGTGGTGGTGCTAGCAAAAAACAAAGG
GGGAACAAATGAACCAGCCCAGCCGTCATGAACGCATTATCATCGTTTTC
TGCAGGGCGTTGAGAGTGTGTGGGTTGGGTGGATGGATTATTTCGTTTGC
CAGGGTGCTCGTTAGATATACCCTCAGAGTACCCCCTAGTCGCTCGGAAT
CGAAAGGGTTGCGGGAGTAGTGATTGGAAACGCGGACATCTTGTCGTGCG
GCTGCCGGCCACAAGCGGAACTACGGCCGGCAGGCAAGGGGGAATCAAGA
GCATGGAATATGATGAGTGGCCCCAGGTGTTTTCTGGTTGTGGAGACGTT
TTTGGTCCTACCCAAATGCGGATGCAGGCGGTTTTATATGGTGCCTTACG
CAGCGGTGACGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig96:16083..16794-

>mRNA_P-littoralis_Contig96.4.1 ID=mRNA_P-littoralis_Contig96.4.1|Name=mRNA_P-littoralis_Contig96.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig96:16083..16794- (Pylaiella littoralis U1_48)
ATGAAGTGGGCTGCTGCCGCGTCAGCGAAAGTTGATGGGACCCCGGGGTC
GTACCAAGCTTATACAGCATTCGTAGAGAGGCAGGAGCGTGAACTTCAGG
CGTTCGTGCGGGGGCCAGCGCCTAAGGATCCATTGGCTGGGCTAGGGGTA
ACCCACCCATTAATCTGGTCAAGAGTAGAAAAGAAACTAGACACAAAGAT
GCGCCTGGCACGGAAGGGGGTGGTGGTGCTAGCAAAAAACAAAGGGGGAA
CAAATGAACCAGCCCAGCCGTCATGA
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