mRNA_P-littoralis_Contig957.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig957.21.1
Unique NamemRNA_P-littoralis_Contig957.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig957.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig957contigP-littoralis_Contig957:81716..82846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size525
Hectar predicted targeting categoryother localisation
Exons2
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791870.1974664-UTR-P-littoralis_Contig957:81715..817311680791870.1974664-UTR-P-littoralis_Contig957:81715..81731Pylaiella littoralis U1_48UTRP-littoralis_Contig957 81716..81731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791870.213349-CDS-P-littoralis_Contig957:81731..821581680791870.213349-CDS-P-littoralis_Contig957:81731..82158Pylaiella littoralis U1_48CDSP-littoralis_Contig957 81732..82158 +
1680791870.2269075-CDS-P-littoralis_Contig957:82766..828461680791870.2269075-CDS-P-littoralis_Contig957:82766..82846Pylaiella littoralis U1_48CDSP-littoralis_Contig957 82767..82846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig957.21.1prot_P-littoralis_Contig957.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig957 81732..82846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig957.21.1

>prot_P-littoralis_Contig957.21.1 ID=prot_P-littoralis_Contig957.21.1|Name=mRNA_P-littoralis_Contig957.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
MADPTGGGAAQPVSQPTEPSSRLIIGGVPVQVVGAGKGRSKQTSAIWKHV
VEFTPATASGKNIKCMVKHKLPAVNNVPAREVTCGFLMKYVRADASKGIS
SGGTNGMWKHFRDKHKHIREEEMPKSSHSTEGKKRKASLLAGVQQAQASA
GKGPMDKHMITSLGKAQQE
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mRNA from alignment at P-littoralis_Contig957:81716..82846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig957.21.1 ID=mRNA_P-littoralis_Contig957.21.1|Name=mRNA_P-littoralis_Contig957.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1131bp|location=Sequence derived from alignment at P-littoralis_Contig957:81716..82846+ (Pylaiella littoralis U1_48)
CACGAACACACACTCTATGGCGGACCCTACCGGCGGCGGCGCTGCCCAGC
CTGTGTCACAGCCAACAGAGCCATCCAGTCGGTTGATAATTGGCGGTGTT
CCCGTACAAGTGGTCGGTGCTGGGAAAGGGAGAAGCAAGCAGACCTCTGC
GATTTGGAAGCATGTCGTAGAGTTCACGCCAGCCACGGCAAGTGGCAAGA
ACATCAAGTGCATGGTCAAACACAAGCTTCCCGCGGTGAACAACGTTCCA
GCACGCGAAGTGACGTGCGGCTTCTTGATGAAGTACGTCCGAGCTGACGC
CAGCAAAGGGATCTCCAGCGGAGGGACGAACGGCATGTGGAAGCACTTCC
GCGACAAGCACAAACACATCCGCGAGGAAGAGATGCCAAAGAGCTCGCAC
AGCACCGAAGGGAAAAAGAGGAAGGCGAGCCTCCTTGCCGGAGGTAAGAG
TGCGAAGAGTGAGGGGCTACTGCAGTATCGCCTGCGTTAGCAGTGGTTGG
GTGTGATTTGTGTGGTGCTTTAGTTTGATGTGTACCACATGCGTCGCACA
CGCTGTGCGCTGTTTTGTTTTTTTTTGTAGACTTTGGACTTTTCAAACTT
TTGACCGATCATACGGAAGACAACACCCCCAAAAGACATTTGTTTTTTTT
TAAACTCACTTGCTTGTTGCTCTCAAAACACCGATCTTGGACGTTTTTGA
GTTAGAGTCTGGACTATGCGTACACAACAACCTCCTGGAACACCCTAACG
CTGTTTCACATTTTAGATTTTAGCGTTTTTTGGTTGAACGCAGATATATA
GATAAACTTAAATATTTTTATATTTTTACTGTTTATTTTGTACCGGTTTT
GTATTTTGTTTCCCACGGTAGTTATGTGTTGCGGCCTGTGCATTTTTTAT
CATTTTTTAACACTTCATTGCTACCTGTACTTGTATCACTTTTCATTTTG
TGTTAAATTCAAGCCCGTGCTGACCACACACCGTGTTGGTTCTCTCTCGC
TCTCTTGTCTCTTTCAACCCTTTCCCCGCCTCCCTGTCTTGTGTGGATCA
GTCCAGCAAGCACAAGCGAGCGCAGGCAAAGGGCCGATGGACAAACACAT
GATCACTTCGCTTGGCAAGGCCCAACAAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig957:81716..82846+

>mRNA_P-littoralis_Contig957.21.1 ID=mRNA_P-littoralis_Contig957.21.1|Name=mRNA_P-littoralis_Contig957.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig957:81716..82846+ (Pylaiella littoralis U1_48)
ATGGCGGACCCTACCGGCGGCGGCGCTGCCCAGCCTGTGTCACAGCCAAC
AGAGCCATCCAGTCGGTTGATAATTGGCGGTGTTCCCGTACAAGTGGTCG
GTGCTGGGAAAGGGAGAAGCAAGCAGACCTCTGCGATTTGGAAGCATGTC
GTAGAGTTCACGCCAGCCACGGCAAGTGGCAAGAACATCAAGTGCATGGT
CAAACACAAGCTTCCCGCGGTGAACAACGTTCCAGCACGCGAAGTGACGT
GCGGCTTCTTGATGAAGTACGTCCGAGCTGACGCCAGCAAAGGGATCTCC
AGCGGAGGGACGAACGGCATGTGGAAGCACTTCCGCGACAAGCACAAACA
CATCCGCGAGGAAGAGATGCCAAAGAGCTCGCACAGCACCGAAGGGAAAA
AGAGGAAGGCGAGCCTCCTTGCCGGAGTCCAGCAAGCACAAGCGAGCGCA
GGCAAAGGGCCGATGGACAAACACATGATCACTTCGCTTGGCAAGGCCCA
ACAAGAA
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