mRNA_P-littoralis_Contig95.84.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig95.84.1
Unique NamemRNA_P-littoralis_Contig95.84.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig95.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig95contigP-littoralis_Contig95:329470..332044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size799
Hectar predicted targeting categoryother localisation
Exons2
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791864.766717-UTR-P-littoralis_Contig95:329469..3294961680791864.766717-UTR-P-littoralis_Contig95:329469..329496Pylaiella littoralis U1_48UTRP-littoralis_Contig95 329470..329496 +
1680791864.8010302-UTR-P-littoralis_Contig95:331620..3320441680791864.8010302-UTR-P-littoralis_Contig95:331620..332044Pylaiella littoralis U1_48UTRP-littoralis_Contig95 331621..332044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791864.7783666-CDS-P-littoralis_Contig95:329496..3296121680791864.7783666-CDS-P-littoralis_Contig95:329496..329612Pylaiella littoralis U1_48CDSP-littoralis_Contig95 329497..329612 +
1680791864.7904358-CDS-P-littoralis_Contig95:331388..3316201680791864.7904358-CDS-P-littoralis_Contig95:331388..331620Pylaiella littoralis U1_48CDSP-littoralis_Contig95 331389..331620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig95.84.1prot_P-littoralis_Contig95.84.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig95 329497..331620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig95.84.1

>prot_P-littoralis_Contig95.84.1 ID=prot_P-littoralis_Contig95.84.1|Name=mRNA_P-littoralis_Contig95.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MPDRDTVRRMEGIRRGGGEEAVLADGVKSKRRGHLQGGRPPTSIRESWMS
ALLDEDSSGGPGYWVKGAQDESRGRRTTTLGSQSPGTQKIRQRIHDAQTA
LRSLRRTTAAAAVCS*
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mRNA from alignment at P-littoralis_Contig95:329470..332044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig95.84.1 ID=mRNA_P-littoralis_Contig95.84.1|Name=mRNA_P-littoralis_Contig95.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2575bp|location=Sequence derived from alignment at P-littoralis_Contig95:329470..332044+ (Pylaiella littoralis U1_48)
GGAGGAGGAACGGCGCCAATCGCAGCGATGCCCGACCGTGACACCGTTCG
ACGCATGGAAGGCATTCGTCGAGGCGGGGGGGAAGAGGCGGTTCTGGCGG
ACGGGGTGAAGTCGAAACGACGGGGCCACCTGCAGGGCGGAAGGTGTGAT
TATGTACATACGAAACAGTGTGTGATACTTCGAAGTTTGTGTATGGTGCT
ATCGTATCATATGCCATGGCCTTACTCTGCTGTTGTGCGGTCAGGAAGCG
GCCTGCGAATACTATACTGCTGTACAGCAGTAGAACGCATCTCCGTCAGA
AGGTCCACTAGTATCAACCTACTCATCTGCTGTGTGTGGCTGAAGGTTGT
GATAGCATATTCCCTTAAAAAAAAAGGCGAGGCAGCAGTTGTATGCACGC
ATATGATAGATGGACGAACGCGAGGTGATCGGCGTCGAGCGTGACCCGTG
CTCATTTTGTTTGTTGCCTGAAGGTTCCATTTTCCACCCTCGGGGTCACG
AAAAACATTTGGTACTTCATGTGATACTGCTGTACCGGAGTTATTTGTTT
TTTCGACGGCCGCCCGAGTTGCGTTAAGGGGCCCCGTGCTGGGTGACTCC
TCCTTTGAGACGATCCCGAAGACTTTCCCGTTAAGAAAAAGATATCGCGT
AGAACGACTTGAATATCGATTTCTTGCCCTAAAACTGCCCGCTTGTCTAA
AACAAGAAATCGCGTACATATCGTAGAACGACTTGAACAACAATTTCTTA
GACGATCCCGAAAACGGCCTGTGTCAAAAATGAAGTCGCGAAGAACGACT
TGAACAACAATTTCCTGCCCGACAACTGCCCGTTTGACACAAAAAATGGC
GTAGAACGACTTGAACAACGATTTCAAGTCGACGATCCCTAAAACTGCCT
GTTCAAAAAAAGAAATTGCGTATCGTAGAACGACTTGAACAACGGTTCCT
TGCCCTAAAGCTGCCTGTCTAAAACAAGAAATCGCGCATGATAGAACGAC
TTGAAACAACGATTTCTTAGACGATCCCGAAAACTGCCTGTTTAAAACAA
GAAATCGCGTATGATAGAACGCCATCAACAACGATTTCTTAGACGATCCC
GAAAACTGTCTGTGTAAAAATAAAATCGCGTAGAACGACTTGAACAACGA
TTTCAAGTCGACGATCCCTAAAACTGCCTATTCAAAAAAAGAAATTGCGT
ATCATAGAACGACTTGAACAACGGTTCCTTGCCCTAAAGCTGCCTGTTTA
AAACAAGAAATCGCGCACAATAGAACGACTTGAAACAACGATTTCTTAGA
CGATCCCGAAAACTGCCTGTTTCAAACAAGAAATCGCGTATGATAGAACG
CCTTCAACAACGATTTCTTAGACGATCCCGAAAACTGTCTGTGTAAAAAA
TGAAATCGCGGAGAACGACTTGAACAACGACTTCCTGCCCGACAACTGCC
CTTTTGAAACAAAAAATGGCGTAGAACGACTTGAACAACGATTTCAAGTC
GACGATCCCTAAAACTGCCTGTTCAAAAAAAGAAACCGCGTATCATAGAA
CGACTTGAACAACGGTTCCTTGCCCTAAAGCTGCCTGTTTAAAACAAGAA
ATTGGGTATCATAGAACGACTTGAACAACGGTTCCTTGCCCTAAAGCTGC
CTGTTTAAAACAAGAAATCGCGCATGATAGAACGACTTGAAACAACGATT
TCTTAGACGATCCCGAAAACGGCCTGTTTAAAACAAGAAATCGCGTATGA
TAGAACGCCTTCAACAACGATTTCTTAGACGATCCCGAAACTGCCTGCTT
AAAAAAAGAAATCGAGAACCTCGGAAGGAAGTATATACTTTTTGCTCATG
AGTCTCATCTATCTGCCCCCCCCTCCCCACCCTCAACCCCGTATGGCCAC
GTAACGCCTGTTTTGCCAGGCCGCCCACGTCTATCAGAGAAAGCTGGATG
AGCGCTCTCCTTGACGAAGACAGCAGTGGTGGGCCGGGTTATTGGGTCAA
GGGCGCTCAAGACGAAAGCCGTGGGAGGAGGACGACAACGCTGGGCTCTC
AGAGTCCGGGCACCCAAAAAATCCGGCAACGTATCCACGATGCCCAGACC
GCCCTGAGGTCCCTTCGTAGAACCACAGCAGCAGCAGCAGTGTGCAGCTA
ATTTCTTTATGGTGGTAGTTTTTTGACGCGGCGCTCCGGCTGAGCATATA
GAGTACGAAGTATATGCTACTGCTGTTGTTGTAGCAGCAGCGCGTGTTTC
AATTTTTTTACAGCAGGAAGGAGCTCTTCTCTTCATGCTCCTTTCCATTT
GATTGGTTGATTGGTGGCTTCCTTTTGACGCGCGGGTGGATGGTGTTCGA
TACCTGTGGTCGGTTTTACCTGGTACACCCTTCGGGTGCAAGAGCCGCGC
ACACAATACAGGGCCCAGGGGTAAATACCCGAATCATCAACGATACTGCT
GTACGGATCCATGTACGGATCCATGATGAATGGGATTTTCCAGCCTGCTG
GACACATGTCGTACCACACTCACGGGGTGGCACGACTGGACGCACGGCTG
TTTGTTTGTTTGTTTCAAGGCGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig95:329470..332044+

>mRNA_P-littoralis_Contig95.84.1 ID=mRNA_P-littoralis_Contig95.84.1|Name=mRNA_P-littoralis_Contig95.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig95:329470..332044+ (Pylaiella littoralis U1_48)
ATGCCCGACCGTGACACCGTTCGACGCATGGAAGGCATTCGTCGAGGCGG
GGGGGAAGAGGCGGTTCTGGCGGACGGGGTGAAGTCGAAACGACGGGGCC
ACCTGCAGGGCGGAAGGCCGCCCACGTCTATCAGAGAAAGCTGGATGAGC
GCTCTCCTTGACGAAGACAGCAGTGGTGGGCCGGGTTATTGGGTCAAGGG
CGCTCAAGACGAAAGCCGTGGGAGGAGGACGACAACGCTGGGCTCTCAGA
GTCCGGGCACCCAAAAAATCCGGCAACGTATCCACGATGCCCAGACCGCC
CTGAGGTCCCTTCGTAGAACCACAGCAGCAGCAGCAGTGTGCAGCTAA
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