mRNA_P-littoralis_Contig941.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig941.30.1
Unique NamemRNA_P-littoralis_Contig941.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig941.30.1 vs. uniprot
Match: A0A6H5JA48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA48_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.400e-38
Identity = 90/121 (74.38%), Postives = 93/121 (76.86%), Query Frame = 1 
Query:  145 VVVEDGAPNLSRELAATPVTGTQPDEAVAA-HASAQAVVET-------EREQPLPASEVLVAGDVAVQAAGEAGAGDVMPTSCGSAGVAQWPGEAPRVQNSRGSHDLLDQIRADDGEVEHG 483
            V + D AP+LS+ELAAT VTGTQPDEAVAA  AS QAVVET       E EQPLPASE LVAGDV VQAAGEAGA DVM TS GS GVAQ  GEAPRVQ SRGSHDLLDQIR   GEVE G
Sbjct:   30 VPIGDDAPDLSQELAATQVTGTQPDEAVAAASASPQAVVETATPGQDTEHEQPLPASEALVAGDVGVQAAGEAGAADVMLTSSGSVGVAQQTGEAPRVQESRGSHDLLDQIRVYGGEVEQG 150
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BLAST of mRNA_P-littoralis_Contig941.30.1 vs. uniprot
Match: A0A6H5KUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR8_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.930e-38
Identity = 90/135 (66.67%), Postives = 99/135 (73.33%), Query Frame = 1 
Query:  100 DGARFEEARPSVPMHVVVEDGAPNLSRELAATPVTGTQPDEAVAAHASAQAVVET-------EREQPLPASEVLVAGDVAVQAAGEAGAGDVMPTSCGSAGVAQWPGEAPRVQNSRGSHDLLDQIRADDGEVEHG 483
            DGA  +E  P       + D AP+LS+ELA T VTGTQPDEA+AA ASAQ VVET       ER+QPLPASE LVAG V VQAAGEAGAGDVMPT  GS G+AQ  GEAPRVQ SRGSHD+LD+IR D GEVE G
Sbjct:  543 DGANHDETVP-------IGDCAPDLSQELAVTQVTGTQPDEALAAPASAQVVVETVTPGQDTERQQPLPASEALVAGGVEVQAAGEAGAGDVMPTLSGSVGLAQQTGEAPRVQKSRGSHDVLDRIRVDGGEVEQG 670
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BLAST of mRNA_P-littoralis_Contig941.30.1 vs. uniprot
Match: A0A6H5K7R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R7_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 6.450e-37
Identity = 92/136 (67.65%), Postives = 96/136 (70.59%), Query Frame = 1 
Query:  100 DGARFEEARPSVPMHVVVEDGAPNLSRELAATPVTGTQPDEAVAA-HASAQAVVET-------EREQPLPASEVLVAGDVAVQAAGEAGAGDVMPTSCGSAGVAQWPGEAPRVQNSRGSHDLLDQIRADDGEVEHG 483
            DGA  +E  P       +EDGAP+ S+ELA T VTGTQPDEAVAA  ASAQAVVET       EREQPLP  E LVAG V VQ  GEAGAGDVM TS GS GVAQ  GEAPRVQ SRGSHDLLDQIR   GEVE G
Sbjct:  591 DGANHDETVP-------IEDGAPDFSQELAVTQVTGTQPDEAVAAASASAQAVVETATPVQDTEREQPLPPREALVAGGVEVQVVGEAGAGDVMRTSSGSVGVAQQTGEAPRVQESRGSHDLLDQIRVYGGEVEQG 719
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BLAST of mRNA_P-littoralis_Contig941.30.1 vs. uniprot
Match: D8LFH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH6_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.780e-36
Identity = 89/125 (71.20%), Postives = 96/125 (76.80%), Query Frame = 1 
Query:  100 DGARFEEARPSVPMHVVVEDGAPNLSRELAATPVTGTQPDEAVAAHASAQAVVETEREQPLPASEVLVAGDVAVQAAGEAGAGDVMPTSCGSAGVAQWPGEAPRVQNSRGSHDLLDQIRAD-DGE 471
            DGA  +E  P       +EDGA +LS+ELAAT VT TQPDE VAA ASAQ   +TE EQP PAS+ LVAG VAVQAAGEAGA DVMPTS GSAGVA  PGEA RVQNSRGSHDLLD+IRAD DGE
Sbjct:   32 DGANRDETVP-------IEDGALDLSQELAATRVTSTQPDEPVAAPASAQ---DTECEQPSPASDALVAGGVAVQAAGEAGADDVMPTSRGSAGVAIQPGEAQRVQNSRGSHDLLDEIRADEDGE 146
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BLAST of mRNA_P-littoralis_Contig941.30.1 vs. uniprot
Match: A0A6H5JNB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.260e-10
Identity = 47/102 (46.08%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:  100 DGARFEEARPSVPMHVVVEDGAPNLSRELAATPVTGTQPDEAVAAHASAQAVVETEREQPLPASEVLVAGDVAVQAAGEAGAGDVMPTSCGSAGVAQWPGEA 405
            DGAR EE  P       +EDGAP+LS+EL AT V G+QP                           +V GDV VQAAGEAG  D+MPTS  SA VAQWPG +
Sbjct:  464 DGARHEETVP-------IEDGAPDLSQELVATQVNGSQP---------------------------VVEGDVTVQAAGEAGTVDMMPTSVESADVAQWPGSS 531
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BLAST of mRNA_P-littoralis_Contig941.30.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.440e-8
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:  166 PNLSRELAATPVTGTQPDEAVAAHASAQAVV-------ETEREQPLPASEVLVAG 309
            P+LS+ELAAT VTGTQPDEAVAA ASAQAVV       ETE EQP+PA E LV G
Sbjct: 2004 PDLSQELAATQVTGTQPDEAVAAPASAQAVVKAVTPVTETEHEQPVPAREALVKG 2058
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig941.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JA48_9PHAE1.400e-3874.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KUR8_9PHAE3.930e-3866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7R7_9PHAE6.450e-3767.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFH6_ECTSI1.780e-3671.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNB8_9PHAE1.260e-1046.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI2.440e-870.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig941contigP-littoralis_Contig941:59658..60652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LFH6
Model size509
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.91e-37
EggNOG OGs2BXB7@1|root,2S2EZ@2759|Eukaryota
Cds size507
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791857.2968776-CDS-P-littoralis_Contig941:59657..600471680791857.2968776-CDS-P-littoralis_Contig941:59657..60047Pylaiella littoralis U1_48CDSP-littoralis_Contig941 59658..60047 -
1680791857.3201168-CDS-P-littoralis_Contig941:60535..606521680791857.3201168-CDS-P-littoralis_Contig941:60535..60652Pylaiella littoralis U1_48CDSP-littoralis_Contig941 60536..60652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig941.30.1prot_P-littoralis_Contig941.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig941 59658..60652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig941.30.1

>prot_P-littoralis_Contig941.30.1 ID=prot_P-littoralis_Contig941.30.1|Name=mRNA_P-littoralis_Contig941.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
LLATAACLSAGAVASRGGSGGRGSESESENGSGDGARFEEARPSVPMHVV
VEDGAPNLSRELAATPVTGTQPDEAVAAHASAQAVVETEREQPLPASEVL
VAGDVAVQAAGEAGAGDVMPTSCGSAGVAQWPGEAPRVQNSRGSHDLLDQ
IRADDGEVEHGGEGGVVSE
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mRNA from alignment at P-littoralis_Contig941:59658..60652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig941.30.1 ID=mRNA_P-littoralis_Contig941.30.1|Name=mRNA_P-littoralis_Contig941.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=995bp|location=Sequence derived from alignment at P-littoralis_Contig941:59658..60652- (Pylaiella littoralis U1_48)
CTCCTCGCGACCGCCGCCTGTTTGAGCGCCGGAGCTGTGGCAAGCAGGGG
CGGGAGTGGTGGTCGTGGGAGCGAGAGCGAGAGCGAGAACGGAAGTGGCG
ATGGTGCCAGGTTCGAGGTGGGTGATGGTGATTTCGAAGCGCGTTGTGTC
TGAAACACGACTTTATGACAAAAGAGAGGGATGGTTGCAACAAAAAAGGT
CTGTGCGACCCGAGTTGATCTGTCCATATTGTAGTATGAAAGCGAATTTG
GGTTGGAGGCTGGCTTTCTTAAAAAAGACAAACACACAGCCATAGACCAG
TCAAGGTCTGGGTTTTAAACGGTTTACCCGTCAAAAGAGCCCTCGGCCCG
GAGGCCTGGTTAAAAAGCACAAAAAATCAAGAACTGTGACAGAGGGTCGG
TGGACGATGGCGTCCGCAAAGGCTGACATGAGAACACAAAGCCATGCTGA
TCGTCGAGCTCTCGTCCCTGTTACAGACAAACGGACTACTGTTTTCGGCC
CACAACGGACAGTTCGTTGGAATGACGGCGATGCTGGAAAGAAGACCGAT
GCCCCTGCGTCCTTCGCTTTTCCCTCTCCACTCTTTCGACCACTCGTTTT
ACTAGGAGGCGAGACCTTCGGTGCCGATGCACGTGGTGGTCGAAGACGGT
GCGCCGAACCTGTCGCGAGAGCTCGCGGCCACACCGGTGACTGGCACTCA
GCCAGACGAGGCAGTGGCGGCGCATGCATCTGCACAGGCCGTGGTCGAGA
CAGAGCGTGAGCAGCCTCTTCCGGCGAGTGAGGTCTTGGTGGCAGGTGAC
GTGGCGGTGCAAGCAGCGGGAGAGGCCGGTGCCGGCGACGTGATGCCGAC
GTCTTGCGGGTCGGCGGGTGTGGCACAATGGCCGGGTGAAGCTCCGCGAG
TACAGAACAGCCGGGGCTCGCACGACTTGCTCGACCAAATCCGGGCGGAC
GATGGCGAAGTGGAGCATGGGGGAGAGGGGGGAGTAGTAAGCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig941:59658..60652-

>mRNA_P-littoralis_Contig941.30.1 ID=mRNA_P-littoralis_Contig941.30.1|Name=mRNA_P-littoralis_Contig941.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig941:59658..60652- (Pylaiella littoralis U1_48)
CTCCTCGCGACCGCCGCCTGTTTGAGCGCCGGAGCTGTGGCAAGCAGGGG
CGGGAGTGGTGGTCGTGGGAGCGAGAGCGAGAGCGAGAACGGAAGTGGCG
ATGGTGCCAGGTTCGAGGAGGCGAGACCTTCGGTGCCGATGCACGTGGTG
GTCGAAGACGGTGCGCCGAACCTGTCGCGAGAGCTCGCGGCCACACCGGT
GACTGGCACTCAGCCAGACGAGGCAGTGGCGGCGCATGCATCTGCACAGG
CCGTGGTCGAGACAGAGCGTGAGCAGCCTCTTCCGGCGAGTGAGGTCTTG
GTGGCAGGTGACGTGGCGGTGCAAGCAGCGGGAGAGGCCGGTGCCGGCGA
CGTGATGCCGACGTCTTGCGGGTCGGCGGGTGTGGCACAATGGCCGGGTG
AAGCTCCGCGAGTACAGAACAGCCGGGGCTCGCACGACTTGCTCGACCAA
ATCCGGGCGGACGATGGCGAAGTGGAGCATGGGGGAGAGGGGGGAGTAGT
AAGCGAG
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